Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 1.7e-48 195.7 100 100.0
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 9.3e-26 120.2 74 79.7
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 1.0e-24 116.7 73 78.1
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 1.3e-24 116.3 77 71.4
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 3.0e-24 115.2 99 59.6
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 3.9e-24 114.8 74 73.0
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 3.9e-24 114.8 74 73.0
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 5.1e-24 114.4 74 74.3
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 5.1e-24 114.4 74 74.3
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 6.6e-24 114.0 74 75.7
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 8.7e-24 113.6 74 74.3
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 1.1e-23 113.2 74 74.3
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 1.1e-23 113.2 74 71.6
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 1.1e-23 113.2 74 74.3
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 1.5e-23 112.8 74 73.0
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 1.5e-23 112.8 74 73.0
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.5e-23 112.8 74 73.0
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.5e-23 112.8 74 73.0
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 1.5e-23 112.8 75 70.7
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.5e-23 112.8 72 75.0
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.5e-23 112.8 72 75.0
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.9e-23 112.5 74 71.6
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.9e-23 112.5 74 71.6
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 1.9e-23 112.5 74 71.6
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 1.9e-23 112.5 74 71.6
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 1.9e-23 112.5 74 71.6
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 2.5e-23 112.1 74 73.0
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 2.5e-23 112.1 74 73.0
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 2.5e-23 112.1 74 73.0
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 2.5e-23 112.1 73 71.2
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 2.5e-23 112.1 74 73.0
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 2.5e-23 112.1 74 73.0
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 2.5e-23 112.1 74 73.0
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 3.3e-23 111.7 74 71.6
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 4.3e-23 111.3 74 71.6
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 4.3e-23 111.3 74 71.6
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 4.3e-23 111.3 74 71.6
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 4.3e-23 111.3 74 71.6
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 4.3e-23 111.3 74 70.3
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 5.6e-23 110.9 74 70.3
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 5.6e-23 110.9 74 71.6
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 7.3e-23 110.5 74 70.3
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 7.3e-23 110.5 74 71.6
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 7.3e-23 110.5 74 71.6
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 7.3e-23 110.5 74 73.0
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 7.3e-23 110.5 74 70.3
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 7.3e-23 110.5 74 70.3
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 7.3e-23 110.5 74 71.6
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 9.6e-23 110.2 74 70.3
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 9.6e-23 110.2 74 70.3
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 9.6e-23 110.2 74 70.3
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 9.6e-23 110.2 74 70.3
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 9.6e-23 110.2 74 70.3
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 9.6e-23 110.2 74 70.3
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 9.6e-23 110.2 74 71.6
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 1.3e-22 109.8 74 70.3
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 1.3e-22 109.8 74 68.9
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 1.3e-22 109.8 74 70.3
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 1.3e-22 109.8 74 70.3
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.6e-22 109.4 74 70.3
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.6e-22 109.4 74 70.3
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 1.6e-22 109.4 74 70.3
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.6e-22 109.4 74 71.6
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.6e-22 109.4 74 73.0
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 2.1e-22 109.0 74 71.6
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 2.1e-22 109.0 74 71.6
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 2.1e-22 109.0 74 70.3
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.1e-22 109.0 74 68.9
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.1e-22 109.0 74 68.9
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 2.1e-22 109.0 74 68.9
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 2.1e-22 109.0 74 68.9
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 2.1e-22 109.0 74 70.3
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 2.1e-22 109.0 74 70.3
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 2.1e-22 109.0 74 70.3
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 2.1e-22 109.0 74 70.3
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 2.8e-22 108.6 74 70.3
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 2.8e-22 108.6 79 67.1
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 2.8e-22 108.6 74 68.9
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 2.8e-22 108.6 74 68.9
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 2.8e-22 108.6 74 71.6
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 3.6e-22 108.2 74 67.6
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 3.6e-22 108.2 72 72.2
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 3.6e-22 108.2 74 68.9
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 3.6e-22 108.2 74 68.9
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 3.6e-22 108.2 74 68.9
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 3.6e-22 108.2 74 68.9
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 4.8e-22 107.8 74 67.6
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 4.8e-22 107.8 72 73.6
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 6.2e-22 107.5 74 68.9
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.1e-21 106.7 74 67.6
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.1e-21 106.7 74 67.6
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 1.4e-21 106.3 74 68.9
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 1.4e-21 106.3 71 71.8
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 1.8e-21 105.9 74 67.6
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 1.8e-21 105.9 74 67.6
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 1.8e-21 105.9 74 67.6
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.8e-21 105.9 74 67.6
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 1.8e-21 105.9 74 67.6
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 2.4e-21 105.5 72 69.4
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 2.4e-21 105.5 74 67.6
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 4.0e-21 104.8 74 66.2
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 4.0e-21 104.8 71 71.8
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 5.3e-21 104.4 73 67.1
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 6.9e-21 104.0 74 67.6
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 9.0e-21 103.6 74 67.6
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 9.0e-21 103.6 74 67.6
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 1.5e-20 102.8 72 68.1
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 2.0e-20 102.4 74 66.2
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 2.0e-20 102.4 74 64.9
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 2.6e-20 102.1 74 64.9
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 2.6e-20 102.1 74 66.2
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 2.6e-20 102.1 74 66.2
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 4.5e-20 101.3 74 63.5
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 1.3e-19 99.8 74 63.5
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 2.2e-19 99.0 71 67.6
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 2.9e-19 98.6 74 63.5
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 1.1e-18 96.7 72 62.5
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 3.2e-18 95.1 65 72.3
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 1.6e-17 92.8 65 70.8
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 2.7e-17 92.0 51 78.4
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 1.1e-15 86.7 46 82.6
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 1.5e-15 86.3 49 75.5
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 3.3e-15 85.1 71 63.4
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 4.8e-14 81.3 69 59.4
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.8e-13 79.3 71 57.7
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 2.4e-13 79.0 71 57.7
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 2.6e-12 75.5 72 51.4
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 1.7e-11 72.8 68 54.4
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 2.2e-11 72.4 74 54.1
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 1.5e-07 59.7 50 62.0


User provided reference genes

Program Settings