Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 9.0e-96 353.6 180 100.0
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 8.4e-86 320.5 180 92.2
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.2e-76 290.0 179 81.6
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 7.4e-74 280.8 177 81.4
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.6e-73 279.6 158 89.2
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 2.4e-72 275.8 157 88.5
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 2.4e-72 275.8 165 84.8
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 3.1e-72 275.4 180 80.0
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 2.6e-71 272.3 158 84.8
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 3.4e-71 271.9 168 82.1
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.9e-71 271.2 157 86.6
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.9e-71 271.2 157 86.6
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 7.6e-71 270.8 177 76.8
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 1.0e-70 270.4 158 86.1
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.7e-70 269.6 168 82.1
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 3.8e-70 268.5 167 81.4
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 3.8e-70 268.5 167 82.0
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 5.0e-70 268.1 169 78.7
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 6.5e-70 267.7 157 84.7
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 8.5e-70 267.3 166 81.9
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.1e-69 266.9 167 80.8
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 1.1e-69 266.9 169 79.9
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.1e-69 266.9 178 75.8
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.1e-69 266.9 169 80.5
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 4.2e-69 265.0 169 79.9
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 5.5e-69 264.6 178 75.8
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 5.5e-69 264.6 169 79.9
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 7.2e-69 264.2 184 75.5
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 2.1e-68 262.7 158 83.5
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.7e-68 262.3 157 82.2
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 3.6e-68 261.9 157 82.2
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.6e-68 261.9 158 81.6
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.6e-68 261.9 158 81.6
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.6e-68 261.9 180 75.6
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 4.6e-68 261.5 178 73.0
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.6e-68 261.5 158 81.6
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.6e-68 261.5 158 81.6
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.6e-68 261.5 158 81.6
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 4.6e-68 261.5 158 81.6
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 6.1e-68 261.2 157 83.4
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.0e-67 260.4 178 73.0
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.8e-67 259.6 158 80.4
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 1.8e-67 259.6 158 81.0
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 2.3e-67 259.2 178 72.5
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 3.0e-67 258.8 178 72.5
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 3.0e-67 258.8 158 79.7
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 3.0e-67 258.8 158 79.7
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 3.0e-67 258.8 158 79.7
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 3.0e-67 258.8 169 76.3
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 3.0e-67 258.8 178 72.5
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 3.0e-67 258.8 177 72.9
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 3.9e-67 258.5 157 81.5
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 3.9e-67 258.5 166 78.3
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 3.9e-67 258.5 177 72.9
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 5.1e-67 258.1 158 79.7
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 5.1e-67 258.1 177 73.4
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 5.1e-67 258.1 173 76.3
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 5.1e-67 258.1 148 87.2
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 6.7e-67 257.7 157 79.0
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 6.7e-67 257.7 158 79.7
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.1e-66 256.9 158 79.1
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 2.5e-66 255.8 157 79.0
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 2.5e-66 255.8 177 72.9
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 3.3e-66 255.4 161 78.3
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 3.3e-66 255.4 157 79.0
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 3.3e-66 255.4 157 79.0
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 3.3e-66 255.4 157 79.0
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 3.3e-66 255.4 157 81.5
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 3.3e-66 255.4 167 76.6
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.3e-66 255.0 166 77.1
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 4.3e-66 255.0 172 75.6
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 5.7e-66 254.6 157 79.0
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 5.7e-66 254.6 166 77.1
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 5.7e-66 254.6 177 72.3
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 7.4e-66 254.2 158 80.4
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 7.4e-66 254.2 158 80.4
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 7.4e-66 254.2 157 79.0
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.3e-65 253.4 177 71.8
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 2.2e-65 252.7 166 77.1
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 2.8e-65 252.3 179 72.6
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 3.7e-65 251.9 169 72.8
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.8e-65 251.5 168 75.6
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 6.3e-65 251.1 157 78.3
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 6.3e-65 251.1 171 73.1
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 8.2e-65 250.8 167 75.4
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.4e-64 250.0 168 75.0
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 1.8e-64 249.6 168 72.6
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 5.3e-64 248.1 157 78.3
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.5e-63 246.5 158 77.8
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 4.5e-63 245.0 157 77.1
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 4.5e-63 245.0 157 77.1
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 7.7e-63 244.2 178 70.8
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 1.7e-62 243.0 166 72.3
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 1.7e-62 243.0 158 76.6
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.7e-62 243.0 173 71.7
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 2.2e-62 242.7 139 85.6
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 2.9e-62 242.3 174 71.8
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 5.0e-62 241.5 158 76.6
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 5.0e-62 241.5 158 77.2
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.4e-61 240.0 157 73.9
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 1.4e-61 240.0 157 75.2
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.9e-61 239.6 141 86.5
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 5.5e-61 238.0 157 73.2
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 5.5e-61 238.0 172 72.7
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 5.5e-61 238.0 154 76.6
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 7.2e-61 237.7 157 73.2
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 7.2e-61 237.7 160 76.2
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 7.2e-61 237.7 151 78.8
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.2e-60 236.9 149 77.2
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 7.9e-60 234.2 157 73.2
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.4e-59 233.4 146 78.1
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.4e-59 233.4 172 67.4
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 3.0e-59 232.3 138 82.6
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 3.9e-59 231.9 156 74.4
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 5.1e-59 231.5 169 66.3
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.1e-58 230.3 158 70.9
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.0e-58 229.6 162 66.7
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 2.0e-58 229.6 162 65.4
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.4e-58 227.6 152 76.3
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 7.4e-58 227.6 162 68.5
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 7.4e-58 227.6 168 66.7
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.4e-56 223.4 190 63.7
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 1.8e-56 223.0 127 85.8
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.5e-55 219.9 158 69.6
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.3e-54 216.9 133 83.5
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 3.8e-54 215.3 150 70.0
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 5.0e-54 214.9 139 76.3
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 1.4e-53 213.4 138 74.6
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 3.2e-53 212.2 156 65.4
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 1.4e-51 206.8 127 78.7
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 3.9e-51 205.3 132 76.5
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.2e-49 197.6 177 60.5
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.5e-47 191.8 131 73.3
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 1.0e-46 190.7 111 86.5
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 2.9e-46 189.1 143 62.9
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 7.2e-45 184.5 138 72.5
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 2.7e-44 182.6 106 89.6
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 2.7e-44 182.6 136 69.1
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 1.4e-43 180.3 130 70.8
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 3.0e-43 179.1 145 58.6
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 2.2e-41 172.9 129 69.8
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 4.8e-41 171.8 111 77.5
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 2.4e-40 169.5 97 80.4
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 2.7e-39 166.0 111 76.6
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 3.5e-39 165.6 99 78.8
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.5e-38 161.4 130 66.2
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.6e-36 156.8 156 50.6
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 5.2e-35 151.8 79 96.2
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 2.0e-34 149.8 77 97.4
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 1.8e-32 143.3 74 91.9
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.1e-32 141.0 180 51.1
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 9.1e-32 141.0 131 51.9
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.5e-29 133.7 171 51.5
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.6e-28 130.2 175 51.4
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 3.6e-28 129.0 84 75.0
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 9.8e-26 120.9 81 81.5
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 2.8e-25 119.4 80 75.0
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.5e-21 107.1 91 60.4
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.0e-19 100.9 72 75.0
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 2.3e-19 99.8 89 57.3
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 5.2e-19 98.6 115 47.8
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.3e-17 94.0 47 91.5
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 2.7e-15 86.3 70 62.9
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 1.3e-14 84.0 52 78.8
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 2.3e-14 83.2 42 95.2
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 3.0e-14 82.8 42 92.9
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 1.2e-12 77.4 125 42.4
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 9.8e-10 67.8 37 81.1
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-08 63.9 34 88.2
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-07 60.8 42 78.6
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-07 60.8 42 78.6
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 6.0e-07 58.5 91 36.3
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 1.7e-06 57.0 58 51.7


User provided reference genes

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