Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 0.0e+00 1079.3 555 100.0
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 5.3e-240 834.3 559 75.8
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 9.1e-232 807.0 559 73.3
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 9.1e-232 807.0 559 73.7
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 1.2e-231 806.6 558 72.9
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 5.9e-231 804.3 559 73.5
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 7.7e-231 803.9 560 73.6
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 2.9e-230 802.0 560 73.4
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 6.5e-230 800.8 561 73.4
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.1e-229 800.0 559 72.1
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 1.2e-228 796.6 551 73.5
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 1.2e-228 796.6 560 73.9
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 3.6e-228 795.0 551 73.5
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 4.7e-228 794.7 561 72.9
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 4.7e-228 794.7 559 72.6
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 2.3e-227 792.3 555 72.1
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 4.0e-227 791.6 561 74.2
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 6.8e-227 790.8 560 72.5
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 3.4e-226 788.5 562 73.0
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 5.7e-226 787.7 586 69.5
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 9.8e-226 786.9 557 72.5
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 2.8e-225 785.4 578 69.6
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 4.9e-225 784.6 561 72.0
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 6.3e-225 784.3 556 72.1
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 6.3e-225 784.3 556 72.1
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 6.3e-225 784.3 553 71.2
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 1.4e-224 783.1 561 72.2
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 7.0e-224 780.8 560 71.4
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 7.0e-224 780.8 559 72.3
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 1.6e-223 779.6 557 69.7
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 2.7e-223 778.9 561 72.2
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 7.8e-223 777.3 576 70.1
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 1.7e-222 776.2 560 70.7
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 2.9e-222 775.4 561 72.0
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 8.6e-222 773.9 560 71.6
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 2.5e-221 772.3 561 70.8
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 2.5e-221 772.3 561 70.6
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 4.3e-221 771.5 577 69.5
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 4.3e-221 771.5 560 70.4
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 5.6e-221 771.2 554 71.7
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 1.2e-220 770.0 554 72.4
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 3.6e-220 768.5 560 68.9
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 4.7e-220 768.1 561 70.4
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 6.1e-220 767.7 563 70.0
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 8.0e-220 767.3 560 69.6
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 1.0e-219 766.9 559 69.4
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 1.8e-219 766.1 561 70.8
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 5.2e-219 764.6 560 69.3
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 2.0e-218 762.7 556 71.6
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 2.0e-218 762.7 555 69.7
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 3.4e-218 761.9 556 70.5
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 7.5e-218 760.8 555 71.4
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 1.7e-217 759.6 568 67.8
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 2.9e-217 758.8 559 69.9
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 1.4e-216 756.5 553 71.1
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 3.5e-215 751.9 560 69.1
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 2.3e-214 749.2 569 69.1
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 5.0e-214 748.0 541 71.9
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.9e-213 746.1 537 73.0
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 2.5e-213 745.7 562 69.2
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 5.6e-213 744.6 590 66.9
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 5.6e-213 744.6 577 67.9
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.2e-212 743.4 516 73.3
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 2.8e-212 742.3 560 68.8
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 4.7e-212 741.5 561 68.4
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 2.3e-211 739.2 561 68.6
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 5.2e-211 738.0 561 67.4
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 1.2e-210 736.9 555 69.0
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 3.4e-210 735.3 562 66.5
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 9.8e-210 733.8 567 68.3
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 4.9e-209 731.5 559 66.4
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 4.9e-209 731.5 561 67.0
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 1.4e-208 729.9 559 70.1
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 3.2e-208 728.8 561 66.1
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 7.8e-207 724.2 559 67.1
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 1.9e-205 719.5 493 73.8
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 4.3e-205 718.4 565 66.0
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 7.3e-205 717.6 559 65.5
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 2.3e-203 712.6 556 68.9
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 6.8e-203 711.1 567 66.8
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 2.0e-202 709.5 535 70.3
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 4.4e-202 708.4 561 67.2
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 6.4e-201 704.5 558 65.4
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 3.2e-200 702.2 561 65.6
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 5.4e-200 701.4 493 71.8
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 9.2e-200 700.7 509 70.5
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 3.5e-199 698.7 498 72.3
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 4.6e-199 698.4 562 65.8
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 1.7e-198 696.4 556 64.0
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 3.0e-198 695.7 559 65.5
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 8.6e-198 694.1 562 65.5
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 1.5e-197 693.3 558 65.2
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 1.9e-197 693.0 499 71.9
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 2.1e-196 689.5 557 63.6
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 4.7e-196 688.3 560 64.1
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 4.0e-195 685.3 557 63.4
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 6.8e-195 684.5 557 64.5
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 2.0e-194 682.9 557 63.4
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 5.8e-194 681.4 558 64.0
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 7.6e-194 681.0 557 63.6
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 1.6e-191 673.3 558 62.9
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 2.3e-190 669.5 554 62.8
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 2.5e-189 666.0 556 61.9
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 4.3e-189 665.2 556 61.9
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 5.6e-189 664.8 557 61.8
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 5.6e-189 664.8 557 61.8
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 1.4e-187 660.2 541 65.2
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 8.7e-182 641.0 550 61.1
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.2e-178 630.6 557 59.4
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 9.9e-178 627.5 536 59.5
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 3.0e-166 589.3 559 57.4
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 3.2e-160 569.3 428 69.4
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 2.1e-159 566.6 448 66.1
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 2.7e-159 566.2 557 53.9
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 1.2e-154 550.8 454 63.7
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 2.0e-154 550.1 505 58.8
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 1.1e-152 544.3 400 72.0
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 2.5e-152 543.1 554 54.5
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 3.7e-148 529.3 563 52.4
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 2.4e-147 526.6 537 52.9
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 3.2e-144 516.2 580 49.1
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 2.6e-138 496.5 403 62.3
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 5.2e-134 482.3 363 71.1
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 2.0e-117 427.2 529 48.0
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 7.7e-114 415.2 405 56.5
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 2.8e-111 406.8 299 71.6
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 4.4e-109 399.4 565 44.6
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 1.3e-105 387.9 567 42.0
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 2.0e-101 374.0 281 68.0
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 2.9e-100 370.2 546 43.2
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 6.6e-73 279.3 484 40.1
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 1.8e-70 271.2 200 69.0
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 1.3e-60 238.4 375 44.0
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 9.9e-53 212.2 110 97.3
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 5.1e-49 199.9 284 42.6
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 1.5e-48 198.4 142 66.9
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 2.0e-45 188.0 132 67.4
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 2.2e-39 167.9 190 53.7
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 1.1e-38 165.6 145 57.9
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 7.7e-37 159.5 291 37.5
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 2.3e-33 147.9 108 65.7
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 1.5e-32 145.2 101 71.3
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 6.3e-31 139.8 88 76.1
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 3.1e-22 110.9 165 42.4
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 9.1e-22 109.4 77 66.2
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 2.6e-21 107.8 85 62.4
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 8.8e-17 92.8 86 60.5
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 1.5e-16 92.0 204 30.9
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 1.7e-15 88.6 85 55.3
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.8e-14 85.1 73 57.5


User provided reference genes

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