Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 4.9e-64 247.7 127 100.0
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 2.3e-53 212.2 110 97.3
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 6.2e-43 177.6 112 75.0
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 1.1e-42 176.8 110 74.5
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 1.1e-42 176.8 114 71.1
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 2.4e-42 175.6 110 75.5
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 2.4e-42 175.6 114 71.9
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 5.3e-42 174.5 110 75.5
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 5.3e-42 174.5 110 75.5
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 6.9e-42 174.1 111 72.1
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 9.0e-42 173.7 110 75.5
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 2.6e-41 172.2 111 74.8
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 3.4e-41 171.8 112 75.0
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 5.8e-41 171.0 107 76.6
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 7.6e-41 170.6 110 73.6
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 7.6e-41 170.6 110 71.8
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 9.9e-41 170.2 111 73.0
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.7e-40 169.5 110 72.7
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 1.7e-40 169.5 111 72.1
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.7e-40 169.5 111 72.1
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.7e-40 169.5 111 72.1
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.7e-40 169.5 111 72.1
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 2.2e-40 169.1 110 71.8
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 2.2e-40 169.1 110 70.9
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 2.2e-40 169.1 107 74.8
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 3.8e-40 168.3 111 69.4
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 3.8e-40 168.3 111 69.4
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 4.9e-40 167.9 110 70.0
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 4.9e-40 167.9 111 73.0
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 6.4e-40 167.5 109 72.5
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 8.4e-40 167.2 107 74.8
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 1.4e-39 166.4 110 70.9
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 1.9e-39 166.0 114 69.3
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 2.4e-39 165.6 110 70.9
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 3.2e-39 165.2 110 72.7
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 3.2e-39 165.2 110 72.7
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 4.2e-39 164.9 107 72.9
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 4.2e-39 164.9 114 66.7
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 4.2e-39 164.9 110 70.0
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 7.1e-39 164.1 110 70.9
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 7.1e-39 164.1 110 70.9
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 7.1e-39 164.1 126 63.5
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 7.1e-39 164.1 110 70.0
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 1.2e-38 163.3 110 69.1
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 1.2e-38 163.3 111 70.3
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 1.6e-38 162.9 110 68.2
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 2.7e-38 162.2 111 66.7
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 3.5e-38 161.8 112 69.6
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 4.6e-38 161.4 110 68.2
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 6.0e-38 161.0 108 73.1
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 7.9e-38 160.6 110 67.3
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.0e-37 160.2 110 66.4
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 1.0e-37 160.2 114 64.0
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 1.3e-37 159.8 107 71.0
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 1.3e-37 159.8 107 71.0
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 1.3e-37 159.8 111 66.7
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 1.3e-37 159.8 110 65.5
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 1.8e-37 159.5 110 70.0
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 2.3e-37 159.1 93 80.6
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 2.3e-37 159.1 110 70.0
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 3.0e-37 158.7 110 69.1
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 3.9e-37 158.3 110 70.9
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 3.9e-37 158.3 114 64.9
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 3.9e-37 158.3 110 66.4
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 6.7e-37 157.5 114 68.4
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 6.7e-37 157.5 111 66.7
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 6.7e-37 157.5 110 70.0
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 8.7e-37 157.1 110 63.6
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 1.1e-36 156.8 111 64.9
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 1.5e-36 156.4 112 66.1
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 1.5e-36 156.4 111 65.8
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 1.9e-36 156.0 110 67.3
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.9e-36 156.0 110 63.6
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 1.9e-36 156.0 110 70.0
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 1.9e-36 156.0 100 72.0
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 2.5e-36 155.6 111 64.0
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 5.6e-36 154.5 107 69.2
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 5.6e-36 154.5 111 64.9
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 5.6e-36 154.5 109 69.7
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 7.4e-36 154.1 110 63.6
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 1.3e-35 153.3 100 71.0
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 3.7e-35 151.8 111 66.7
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 1.8e-34 149.4 111 64.0
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 5.3e-34 147.9 108 65.7
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 5.3e-34 147.9 91 76.9
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 6.9e-34 147.5 110 65.5
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 9.0e-34 147.1 118 62.7
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.5e-33 146.4 103 67.0
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 5.8e-33 144.4 111 64.9
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 9.9e-33 143.7 108 63.9
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 1.3e-32 143.3 111 63.1
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 3.8e-32 141.7 92 73.9
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.1e-31 140.2 99 69.7
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.4e-31 139.8 111 64.0
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 3.2e-31 138.7 111 64.0
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 3.2e-31 138.7 91 72.5
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 5.5e-31 137.9 111 62.2
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 7.1e-31 137.5 111 63.1
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 7.1e-31 137.5 111 61.3
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 9.3e-31 137.1 111 60.4
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 9.3e-31 137.1 111 60.4
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 1.2e-30 136.7 111 61.3
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 1.6e-30 136.3 111 59.5
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 1.6e-30 136.3 111 59.5
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 1.6e-30 136.3 111 59.5
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 3.5e-30 135.2 111 62.2
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 3.5e-30 135.2 114 57.0
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 1.0e-29 133.7 111 59.5
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 6.7e-29 131.0 111 58.6
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 3.3e-28 128.6 108 55.6
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 5.6e-28 127.9 111 57.7
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 5.6e-28 127.9 111 57.7
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 5.6e-28 127.9 111 57.7
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 2.1e-27 125.9 103 58.3
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 4.8e-27 124.8 104 61.5
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 4.0e-26 121.7 103 56.3
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 3.2e-23 112.1 104 51.0
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 3.2e-23 112.1 68 75.0
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 7.1e-23 110.9 114 46.5
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 9.3e-23 110.5 82 62.2
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 2.3e-21 105.9 91 53.8
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 1.6e-19 99.8 78 62.8
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 1.3e-16 90.1 86 54.7
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 2.5e-15 85.9 48 72.9
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 3.2e-15 85.5 80 51.2
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 2.7e-14 82.4 48 72.9
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 2.3e-13 79.3 48 70.8
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.3e-13 79.3 67 59.7
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 5.1e-13 78.2 48 68.8
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 5.7e-12 74.7 52 57.7
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 9.7e-12 73.9 53 62.3
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 3.8e-08 62.0 49 57.1


User provided reference genes

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