Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 9.0e-41 170.2 115 100.0
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 1.9e-14 82.8 50 80.0
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 3.2e-14 82.0 56 67.9
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 3.2e-14 82.0 53 73.6
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 1.2e-13 80.1 43 88.4
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 1.2e-13 80.1 54 70.4
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 1.2e-13 80.1 57 68.4
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 1.2e-13 80.1 57 68.4
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 1.6e-13 79.7 53 73.6
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 1.6e-13 79.7 53 73.6
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 2.1e-13 79.3 58 69.0
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 2.1e-13 79.3 56 71.4
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 3.6e-13 78.6 53 71.7
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 3.6e-13 78.6 61 68.9
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 6.1e-13 77.8 58 67.2
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 6.1e-13 77.8 54 74.1
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 7.9e-13 77.4 44 77.3
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 1.0e-12 77.0 96 47.9
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 1.0e-12 77.0 41 85.4
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 1.8e-12 76.3 52 73.1
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 3.0e-12 75.5 58 65.5
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 3.9e-12 75.1 51 70.6
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 3.9e-12 75.1 52 73.1
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 5.1e-12 74.7 35 97.1
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 6.7e-12 74.3 96 44.8
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 6.7e-12 74.3 38 86.8
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 6.7e-12 74.3 57 64.9
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 8.8e-12 73.9 37 89.2
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 1.1e-11 73.6 36 91.7
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 1.5e-11 73.2 53 66.0
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 2.0e-11 72.8 39 84.6
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 2.0e-11 72.8 56 64.3
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 2.0e-11 72.8 35 91.4
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 2.0e-11 72.8 35 91.4
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 2.0e-11 72.8 35 91.4
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 2.0e-11 72.8 36 88.9
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 2.5e-11 72.4 35 91.4
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 2.5e-11 72.4 35 91.4
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 3.3e-11 72.0 34 94.1
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 5.7e-11 71.2 56 64.3
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 7.4e-11 70.9 79 50.6
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 7.4e-11 70.9 56 64.3
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 7.4e-11 70.9 36 86.1
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 9.7e-11 70.5 58 63.8
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 9.7e-11 70.5 41 78.0
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 1.3e-10 70.1 36 83.3
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 1.7e-10 69.7 38 78.9
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 2.2e-10 69.3 35 85.7
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 2.2e-10 69.3 35 85.7
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.2e-10 69.3 35 85.7
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.2e-10 69.3 35 85.7
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 2.2e-10 69.3 52 69.2
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 2.8e-10 68.9 35 85.7
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 2.8e-10 68.9 35 85.7
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 4.8e-10 68.2 35 82.9
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 4.8e-10 68.2 35 82.9
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 4.8e-10 68.2 35 82.9
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 4.8e-10 68.2 34 88.2
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 4.8e-10 68.2 34 85.3
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 4.8e-10 68.2 35 82.9
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 4.8e-10 68.2 82 46.3
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 6.3e-10 67.8 34 85.3
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 6.3e-10 67.8 34 85.3
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 6.3e-10 67.8 34 85.3
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 6.3e-10 67.8 35 82.9
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 6.3e-10 67.8 35 82.9
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 6.3e-10 67.8 38 84.2
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 6.3e-10 67.8 34 85.3
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 6.3e-10 67.8 34 85.3
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 6.3e-10 67.8 60 65.0
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 8.2e-10 67.4 34 85.3
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 8.2e-10 67.4 34 85.3
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 1.4e-09 66.6 34 82.4
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 1.4e-09 66.6 34 82.4
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 1.4e-09 66.6 38 81.6
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 1.4e-09 66.6 38 76.3
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 1.8e-09 66.2 35 82.9
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 1.8e-09 66.2 35 82.9
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 2.4e-09 65.9 33 84.8
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 2.4e-09 65.9 32 87.5
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 2.4e-09 65.9 41 75.6
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 3.1e-09 65.5 34 79.4
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 3.1e-09 65.5 34 82.4
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 4.1e-09 65.1 32 87.5
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 5.3e-09 64.7 33 81.8
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 5.3e-09 64.7 34 85.3
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 6.9e-09 64.3 35 77.1
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 9.1e-09 63.9 65 52.3
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 9.1e-09 63.9 49 67.3
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 9.1e-09 63.9 33 84.8
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 7.7e-08 60.8 34 73.5
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 1.3e-07 60.1 63 60.3
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 3.8e-07 58.5 50 62.0
PRCOL_00001132 Prasinoderma coloniale HOM05D006246 ORTHO05D007932 6.5e-07 57.8 48 56.2
Mapoly0071s0091 Marchantia polymorpha HOM05D006246 ORTHO05D007932 2.5e-06 55.8 56 55.4
Gohir.A05G410100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 5.5e-06 54.7 26 88.5
ATR1136G009 Amborella trichopoda HOM05D006246 ORTHO05D007932 7.2e-06 54.3 58 51.7
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 7.2e-06 54.3 32 75.0


User provided reference genes

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