Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 4.0e-134 481.5 251 100.0
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 9.0e-86 320.9 248 64.9
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 2.6e-85 319.3 248 64.5
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 7.6e-85 317.8 248 64.1
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.3e-84 317.0 243 66.3
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 2.4e-83 312.8 248 64.5
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 7.1e-83 311.2 279 60.9
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 3.5e-82 308.9 256 64.1
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 6.0e-82 308.1 255 63.9
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 1.8e-81 306.6 252 64.3
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 2.3e-81 306.2 251 64.1
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 3.9e-81 305.4 253 63.6
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 6.7e-81 304.7 253 64.0
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 1.5e-80 303.5 251 63.7
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 1.5e-80 303.5 256 60.9
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 1.5e-80 303.5 262 61.1
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 1.9e-80 303.1 248 62.9
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 1.3e-79 300.4 254 63.0
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 1.3e-79 300.4 251 62.2
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 1.6e-79 300.1 250 62.0
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 2.1e-79 299.7 264 64.0
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 2.8e-79 299.3 256 61.7
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 3.7e-79 298.9 258 62.0
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 4.8e-79 298.5 253 62.1
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 8.1e-79 297.7 258 61.6
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 1.4e-78 297.0 254 63.4
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 3.1e-78 295.8 248 62.9
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 2.0e-77 293.1 251 59.4
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 2.0e-77 293.1 251 59.4
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 3.4e-77 292.4 255 60.8
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 1.3e-76 290.4 257 59.5
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 1.3e-76 290.4 251 61.0
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 2.2e-76 289.7 260 60.0
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 6.5e-76 288.1 252 60.7
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 8.4e-76 287.7 257 59.1
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 3.2e-75 285.8 255 58.0
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 4.2e-75 285.4 250 60.4
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 5.5e-75 285.0 254 59.1
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 1.6e-74 283.5 276 55.1
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.6e-74 283.5 250 60.4
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.6e-74 283.5 250 60.0
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 2.1e-74 283.1 253 60.1
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 2.7e-74 282.7 255 60.8
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 2.7e-74 282.7 252 59.9
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 2.7e-74 282.7 253 57.3
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 3.5e-74 282.3 254 58.3
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 7.9e-74 281.2 257 58.8
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 1.3e-73 280.4 251 60.2
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 3.0e-73 279.3 263 56.7
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 6.7e-73 278.1 254 57.9
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 1.5e-72 276.9 254 59.1
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 1.9e-72 276.6 254 59.1
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 2.5e-72 276.2 256 59.4
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 5.7e-72 275.0 254 60.2
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 1.3e-71 273.9 257 56.8
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 1.6e-71 273.5 251 57.0
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 6.2e-71 271.6 261 54.4
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 8.2e-71 271.2 212 65.6
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 1.4e-70 270.4 246 61.8
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 3.1e-70 269.2 256 58.6
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 5.3e-70 268.5 256 58.6
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 5.3e-70 268.5 261 54.0
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 6.9e-70 268.1 255 58.0
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 2.6e-69 266.2 252 57.1
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 1.7e-68 263.5 254 56.3
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 2.2e-68 263.1 251 56.6
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 3.8e-68 262.3 251 55.4
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 8.4e-68 261.2 253 55.3
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 1.4e-67 260.4 249 57.4
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 1.4e-67 260.4 261 52.1
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 1.9e-67 260.0 252 60.3
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 5.5e-67 258.5 253 54.2
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 7.2e-67 258.1 253 54.5
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.6e-66 256.9 253 55.7
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 2.1e-66 256.5 262 52.3
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 3.5e-66 255.8 253 55.3
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 4.6e-66 255.4 253 53.0
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 6.1e-66 255.0 254 52.4
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 7.9e-66 254.6 256 56.6
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 2.3e-65 253.1 253 54.5
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 3.9e-65 252.3 250 53.2
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 3.3e-64 249.2 256 53.5
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 8.2e-63 244.6 249 51.8
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 2.4e-62 243.0 278 50.7
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 5.9e-61 238.4 278 49.6
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 3.8e-60 235.7 261 52.1
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 1.1e-59 234.2 256 51.6
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 1.4e-59 233.8 258 51.2
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 3.2e-59 232.6 254 48.8
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 5.5e-59 231.9 213 60.6
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 2.7e-58 229.6 251 50.6
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 3.9e-57 225.7 255 50.6
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.3e-55 220.7 194 62.9
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 2.0e-53 213.4 301 43.5
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 2.1e-50 203.4 250 48.8
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 7.9e-50 201.4 259 46.3
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 4.1e-46 189.1 156 64.7
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 7.0e-46 188.3 156 57.1
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 4.2e-43 179.1 241 45.2
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 3.2e-35 152.9 194 44.8
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 2.0e-32 143.7 246 37.0
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 2.0e-29 133.7 237 35.4
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 5.5e-27 125.6 142 55.6
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 3.5e-21 106.3 125 52.8
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 3.4e-16 89.7 92 46.7
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 7.0e-14 82.0 224 29.5
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 9.2e-14 81.6 224 29.9
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 6.2e-10 68.9 55 49.1
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 9.2e-06 55.1 108 36.1


User provided reference genes

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