Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03160 Coffea canephora HOM05D000167 ORTHO05D044658 3.6e-28 127.5 62 100.0
Cc02_g10040 Coffea canephora HOM05D000167 ORTHO05D000994 1.2e-12 75.9 47 78.7
Peaxi162Scf00244g00910 Petunia axillaris HOM05D000167 ORTHO05D000994 4.9e-09 63.9 64 51.6
PGSC0003DMG400042232 Solanum tuberosum HOM05D000167 ORTHO05D000994 6.4e-09 63.5 52 59.6
Nitab4.5_0005390g0060 Nicotiana tabacum HOM05D000167 ORTHO05D000994 8.3e-09 63.2 49 61.2
Cc05_g02860 Coffea canephora HOM05D002722 ORTHO05D003076 1.1e-08 62.8 41 75.6
Peaxi162Scf00253g00137 Petunia axillaris HOM05D000167 ORTHO05D000994 1.1e-08 62.8 54 57.4
Sopen11g003320 Solanum pennellii HOM05D000167 ORTHO05D000994 1.4e-08 62.4 52 57.7
PGSC0003DMG400019485 Solanum tuberosum HOM05D000167 ORTHO05D000994 2.4e-08 61.6 48 58.3
Solyc11g007460.1 Solanum lycopersicum HOM05D000167 ORTHO05D000994 3.2e-08 61.2 46 60.9
Solyc11g007470.1 Solanum lycopersicum HOM05D000167 ORTHO05D000994 3.2e-08 61.2 44 61.4
Solyc11g007480.1 Solanum lycopersicum HOM05D000167 ORTHO05D000994 3.2e-08 61.2 50 58.0
Sopen11g003310 Solanum pennellii HOM05D000167 ORTHO05D000994 3.2e-08 61.2 46 60.9
PGSC0003DMG400045814 Solanum tuberosum HOM05D000167 ORTHO05D000994 3.2e-08 61.2 48 58.3
Nitab4.5_0008756g0010 Nicotiana tabacum HOM05D000167 ORTHO05D000994 4.1e-08 60.8 46 58.7
Peaxi162Scf00253g00133 Petunia axillaris HOM05D000167 ORTHO05D000994 4.1e-08 60.8 54 53.7
PGSC0003DMG400000103 Solanum tuberosum HOM05D000167 ORTHO05D000994 4.1e-08 60.8 45 60.0
PGSC0003DMG400002113 Solanum tuberosum HOM05D000167 ORTHO05D000994 4.1e-08 60.8 45 60.0
PGSC0003DMG400020901 Solanum tuberosum HOM05D000167 ORTHO05D000994 4.1e-08 60.8 45 60.0
MSTRG.21810 Avicennia marina HOM05D000167 ORTHO05D000994 5.4e-08 60.5 51 54.9
Peaxi162Scf00030g00011 Petunia axillaris HOM05D000167 ORTHO05D000994 5.4e-08 60.5 45 64.4
PGSC0003DMG400016050 Solanum tuberosum HOM05D000167 ORTHO05D000994 5.4e-08 60.5 48 58.3
Sabra08G0016700 Salix brachista HOM05D000167 ORTHO05D000994 7.1e-08 60.1 45 57.8
Nitab4.5_0000962g0010 Nicotiana tabacum HOM05D000167 ORTHO05D000994 9.2e-08 59.7 49 55.1
Peaxi162Scf00065g00520 Petunia axillaris HOM05D000167 ORTHO05D000994 9.2e-08 59.7 45 60.0
Peaxi162Scf00244g00086 Petunia axillaris HOM05D000167 ORTHO05D000994 9.2e-08 59.7 45 62.2
PGSC0003DMG400019497 Solanum tuberosum HOM05D000167 ORTHO05D000994 1.2e-07 59.3 36 72.2
Gohir.A10G235500 Gossypium hirsutum HOM05D000167 ORTHO05D000994 1.6e-07 58.9 54 53.7
PGSC0003DMG400020895 Solanum tuberosum HOM05D000167 ORTHO05D000994 1.6e-07 58.9 36 69.4
PGSC0003DMG400020900 Solanum tuberosum HOM05D000167 ORTHO05D000994 1.6e-07 58.9 36 69.4
Peaxi162Scf00189g00055 Petunia axillaris HOM05D000167 ORTHO05D000994 2.1e-07 58.5 45 62.2
Solyc11g007380.1 Solanum lycopersicum HOM05D000167 ORTHO05D000994 2.1e-07 58.5 45 60.0
Nitab4.5_0001569g0010 Nicotiana tabacum HOM05D000167 ORTHO05D000994 2.7e-07 58.2 46 56.5
Sopen11g003270 Solanum pennellii HOM05D000167 ORTHO05D000994 2.7e-07 58.2 45 60.0
PGSC0003DMG400019093 Solanum tuberosum HOM05D000167 ORTHO05D000994 2.7e-07 58.2 48 58.3
CAN.G162.3 Capsicum annuum HOM05D000167 ORTHO05D000994 3.5e-07 57.8 53 54.7
COL.COLO4_20116 Corchorus olitorius HOM05D000167 ORTHO05D000994 3.5e-07 57.8 52 51.9
Nitab4.5_0002288g0050 Nicotiana tabacum HOM05D000167 ORTHO05D000994 3.5e-07 57.8 45 57.8
Oeu029271.1 Olea europaea HOM05D000167 ORTHO05D000994 3.5e-07 57.8 48 56.2
Peaxi162Scf00244g00911 Petunia axillaris HOM05D000167 ORTHO05D000994 3.5e-07 57.8 52 55.8
Rhsim04G0113400 Rhododendron simsii HOM05D000167 ORTHO05D000994 3.5e-07 57.8 46 58.7
Aqoxy4G02861 Aquilegia oxysepala HOM05D000167 ORTHO05D000994 4.6e-07 57.4 46 60.9
Dinv06793 Davidia involucrata HOM05D000167 ORTHO05D000994 4.6e-07 57.4 54 50.0
SalBow6G5455 Salvia bowleyana HOM05D000167 ORTHO05D000994 4.6e-07 57.4 44 59.1
CSS0021985 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000994 6.0e-07 57.0 58 53.4
CSS0022802 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000994 6.0e-07 57.0 58 53.4
CSS0024992 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000994 6.0e-07 57.0 58 53.4
CSS0027505 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000994 6.0e-07 57.0 58 53.4
Migut.G00202 Erythranthe guttata HOM05D000167 ORTHO05D000994 6.0e-07 57.0 48 52.1
SalBow5G3178 Salvia bowleyana HOM05D000167 ORTHO05D000994 6.0e-07 57.0 48 56.2
Solyc05g005930.3 Solanum lycopersicum HOM05D000167 ORTHO05D000994 6.0e-07 57.0 43 62.8
Solyc11g007440.1 Solanum lycopersicum HOM05D000167 ORTHO05D044658 6.0e-07 57.0 41 63.4
MSTRG.27522 Avicennia marina HOM05D000167 ORTHO05D000994 7.8e-07 56.6 53 56.6
MSTRG.3947 Avicennia marina HOM05D000167 ORTHO05D000994 7.8e-07 56.6 44 56.8
Nitab4.5_0003074g0070 Nicotiana tabacum HOM05D000167 ORTHO05D000994 7.8e-07 56.6 47 55.3
PSO384G3544 Papaver somniferum HOM05D000167 ORTHO05D000994 7.8e-07 56.6 54 51.9
Peaxi162Scf00003g04132 Petunia axillaris HOM05D000167 ORTHO05D000994 7.8e-07 56.6 38 65.8
Solyc11g007390.1 Solanum lycopersicum HOM05D000167 ORTHO05D000994 7.8e-07 56.6 46 58.7
Sopen05g001960 Solanum pennellii HOM05D000167 ORTHO05D000994 7.8e-07 56.6 43 60.5
Sopen11g003280 Solanum pennellii HOM05D000167 ORTHO05D000994 7.8e-07 56.6 45 60.0
Dinv20815 Davidia involucrata HOM05D000167 ORTHO05D000994 1.0e-06 56.2 51 51.0
Oeu026568.1 Olea europaea HOM05D000167 ORTHO05D000994 1.0e-06 56.2 45 62.2
PGSC0003DMG400020902 Solanum tuberosum HOM05D000167 ORTHO05D000994 1.0e-06 56.2 41 63.4
Migut.B01568 Erythranthe guttata HOM05D000167 ORTHO05D000994 1.3e-06 55.8 52 48.1
Lj2C28T0 Lonicera japonica HOM05D000167 ORTHO05D000994 1.3e-06 55.8 50 48.0
PSO443G0006 Papaver somniferum HOM05D000167 ORTHO05D000994 1.3e-06 55.8 60 51.7
QL04p042266 Quercus lobata HOM05D000167 ORTHO05D000994 1.3e-06 55.8 58 50.0
SalBow2G1929 Salvia bowleyana HOM05D000167 ORTHO05D000994 1.3e-06 55.8 48 54.2
SalBow3G4172 Salvia bowleyana HOM05D000167 ORTHO05D000994 1.3e-06 55.8 59 49.2
Solyc11g007500.2 Solanum lycopersicum HOM05D000167 ORTHO05D000994 1.3e-06 55.8 52 51.9
CAN.G1871.3 Capsicum annuum HOM05D000167 ORTHO05D000994 1.7e-06 55.5 53 52.8
Migut.N00116 Erythranthe guttata HOM05D000167 ORTHO05D000994 1.7e-06 55.5 51 51.0
Nitab4.5_0000452g0060 Nicotiana tabacum HOM05D000167 ORTHO05D000994 1.7e-06 55.5 38 63.2
Rhsim03G0105300 Rhododendron simsii HOM05D000167 ORTHO05D000994 1.7e-06 55.5 54 50.0
SalBow3G4202 Salvia bowleyana HOM05D000167 ORTHO05D000994 1.7e-06 55.5 38 63.2
PGSC0003DMG400019483 Solanum tuberosum HOM05D000167 ORTHO05D000994 1.7e-06 55.5 52 51.9
PGSC0003DMG400023385 Solanum tuberosum HOM05D000167 ORTHO05D000994 1.7e-06 55.5 54 48.1
MSTRG.10061 Avicennia marina HOM05D000167 ORTHO05D000994 2.3e-06 55.1 52 55.8
CSS0040800 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000994 2.3e-06 55.1 49 51.0
Cpa.g.sc19.19 Carica papaya HOM05D000167 ORTHO05D000994 2.3e-06 55.1 38 63.2
CiPaw.13G037000 Carya illinoinensis HOM05D000167 ORTHO05D000994 2.3e-06 55.1 51 51.0
Nitab4.5_0008432g0040 Nicotiana tabacum HOM05D000167 ORTHO05D000994 2.3e-06 55.1 47 55.3
PSO384G2445 Papaver somniferum HOM05D000167 ORTHO05D000994 2.3e-06 55.1 43 60.5
Peaxi162Scf03648g00019 Petunia axillaris HOM05D000167 ORTHO05D000994 2.3e-06 55.1 38 63.2
Peaxi162Scf03917g00006 Petunia axillaris HOM05D000167 ORTHO05D000994 2.3e-06 55.1 38 63.2
Peaxi162Scf03917g00007 Petunia axillaris HOM05D000167 ORTHO05D000994 2.3e-06 55.1 38 63.2
Potri.008G024900 Populus trichocarpa HOM05D000167 ORTHO05D000994 2.3e-06 55.1 42 57.1
SalBow2G1622 Salvia bowleyana HOM05D000167 ORTHO05D000994 2.3e-06 55.1 54 51.9
Sopen08g004700 Solanum pennellii HOM05D000167 ORTHO05D000994 2.3e-06 55.1 51 52.9
TWI15G0154 Tripterygium wilfordii HOM05D000167 ORTHO05D000994 2.3e-06 55.1 59 50.8
TWI15G0964 Tripterygium wilfordii HOM05D000167 ORTHO05D000994 2.3e-06 55.1 53 52.8
CSS0007733 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000994 3.0e-06 54.7 51 51.0
Cc02_g10030 Coffea canephora HOM05D000167 ORTHO05D000994 3.0e-06 54.7 47 53.2
Hma1.2p1_1273F.1_g271910 Hydrangea macrophylla HOM05D000167 ORTHO05D000994 3.0e-06 54.7 51 49.0
Nitab4.5_0000991g0130 Nicotiana tabacum HOM05D000167 ORTHO05D000994 3.0e-06 54.7 38 63.2
Potri.008G024801 Populus trichocarpa HOM05D000167 ORTHO05D000994 3.0e-06 54.7 42 54.8
SalBow3G3086 Salvia bowleyana HOM05D000167 ORTHO05D000994 3.0e-06 54.7 38 63.2
SalBow5G2442 Salvia bowleyana HOM05D000167 ORTHO05D000994 3.0e-06 54.7 42 59.5
SalBow5G3923 Salvia bowleyana HOM05D000167 ORTHO05D000994 3.0e-06 54.7 42 59.5
Cc11_g06140 Coffea canephora HOM05D000167 ORTHO05D000994 3.9e-06 54.3 53 47.2
DCAR_012695 Daucus carota HOM05D000167 ORTHO05D000994 3.9e-06 54.3 46 54.3
DCAR_026654 Daucus carota HOM05D000167 ORTHO05D000994 3.9e-06 54.3 46 50.0
Migut.J01793 Erythranthe guttata HOM05D000167 ORTHO05D000994 3.9e-06 54.3 40 57.5
Lj2C28T3 Lonicera japonica HOM05D000167 ORTHO05D000994 3.9e-06 54.3 59 47.5
PGSC0003DMG400020903 Solanum tuberosum HOM05D000167 ORTHO05D000994 3.9e-06 54.3 39 61.5
PGSC0003DMG400042829 Solanum tuberosum HOM05D000167 ORTHO05D000994 3.9e-06 54.3 39 61.5
Aqoxy6G02446 Aquilegia oxysepala HOM05D000167 ORTHO05D000994 5.1e-06 53.9 43 60.5
Gorai.001G120100 Gossypium raimondii HOM05D000167 ORTHO05D000994 5.1e-06 53.9 44 61.4
Oeu061506.1 Olea europaea HOM05D000167 ORTHO05D000994 5.1e-06 53.9 42 59.5
Oeu061507.1 Olea europaea HOM05D000167 ORTHO05D000994 5.1e-06 53.9 42 59.5
PSO443G0003 Papaver somniferum HOM05D000167 ORTHO05D000994 5.1e-06 53.9 43 55.8
Peaxi162Scf00003g00534 Petunia axillaris HOM05D000167 ORTHO05D000994 5.1e-06 53.9 44 54.5
Rhsim09G0211200 Rhododendron simsii HOM05D000167 ORTHO05D000994 5.1e-06 53.9 44 54.5
SalBow2G0021 Salvia bowleyana HOM05D000167 ORTHO05D000994 5.1e-06 53.9 48 52.1
SalBow5G5419 Salvia bowleyana HOM05D000167 ORTHO05D000994 5.1e-06 53.9 41 63.4
PGSC0003DMG400008181 Solanum tuberosum HOM05D000167 ORTHO05D000994 5.1e-06 53.9 36 63.9
PGSC0003DMG400016051 Solanum tuberosum HOM05D000167 ORTHO05D000994 5.1e-06 53.9 51 51.0
PGSC0003DMG400020896 Solanum tuberosum HOM05D000167 ORTHO05D000994 5.1e-06 53.9 51 51.0
TAR623G1601 Trochodendron aralioides HOM05D000167 ORTHO05D000994 5.1e-06 53.9 51 47.1
TAR633G0433 Trochodendron aralioides HOM05D000167 ORTHO05D000994 5.1e-06 53.9 43 60.5
vmacro10293 Vaccinium macrocarpon HOM05D000167 ORTHO05D000994 5.1e-06 53.9 44 54.5
CsaV3_6G004120 Cucumis sativus L. HOM05D000167 ORTHO05D000994 6.6e-06 53.5 45 55.6
Eucgr.J01015 Eucalyptus grandis HOM05D000167 ORTHO05D000994 6.6e-06 53.5 52 51.9
Peaxi162Scf00253g00138 Petunia axillaris HOM05D000167 ORTHO05D000994 6.6e-06 53.5 51 54.9
PGR044G2345 Punica granatum HOM05D000167 ORTHO05D000994 6.6e-06 53.5 44 59.1
Rhsim09G0143400 Rhododendron simsii HOM05D000167 ORTHO05D000994 6.6e-06 53.5 51 49.0
Rhsim09G0143900 Rhododendron simsii HOM05D000167 ORTHO05D000994 6.6e-06 53.5 44 54.5
RhsimUnG0061400 Rhododendron simsii HOM05D000167 ORTHO05D000994 6.6e-06 53.5 41 58.5
SalBow2G0420 Salvia bowleyana HOM05D000167 ORTHO05D000994 6.6e-06 53.5 50 50.0
Solyc03g071850.1 Solanum lycopersicum HOM05D000167 ORTHO05D000994 6.6e-06 53.5 47 51.1
Sopen03g019280 Solanum pennellii HOM05D000167 ORTHO05D000994 6.6e-06 53.5 47 51.1
PGSC0003DMG400031454 Solanum tuberosum HOM05D000167 ORTHO05D000994 6.6e-06 53.5 47 51.1
TAR623G1085 Trochodendron aralioides HOM05D000167 ORTHO05D000994 6.6e-06 53.5 46 54.3
TAR623G1479 Trochodendron aralioides HOM05D000167 ORTHO05D000994 6.6e-06 53.5 50 50.0
Actinidia19718 Actinidia chinensis HOM05D000167 ORTHO05D000994 8.6e-06 53.1 47 51.1
CSS0002110 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000994 8.6e-06 53.1 38 57.9
CSS0012277 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000994 8.6e-06 53.1 38 57.9
CSS0029555 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000994 8.6e-06 53.1 38 57.9
CSS0029726 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000994 8.6e-06 53.1 51 49.0
CSS0033369 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000994 8.6e-06 53.1 38 57.9
CSS0044625 Camellia sinensis var. sinensis HOM05D000167 ORTHO05D000994 8.6e-06 53.1 38 57.9
CiPaw.13G037100 Carya illinoinensis HOM05D000167 ORTHO05D000994 8.6e-06 53.1 38 60.5
Eucgr.J01008 Eucalyptus grandis HOM05D000167 ORTHO05D000994 8.6e-06 53.1 52 53.8
Eucgr.J01013 Eucalyptus grandis HOM05D000167 ORTHO05D000994 8.6e-06 53.1 49 51.0
Hma1.2p1_0761F.1_g214300 Hydrangea macrophylla HOM05D000167 ORTHO05D000994 8.6e-06 53.1 46 54.3
Oeu061772.2 Olea europaea HOM05D000167 ORTHO05D000994 8.6e-06 53.1 44 50.0
Peaxi162Scf00565g00002 Petunia axillaris HOM05D000167 ORTHO05D000994 8.6e-06 53.1 43 53.5
PGSC0003DMG400026560 Solanum tuberosum HOM05D000167 ORTHO05D000994 8.6e-06 53.1 47 51.1
TAR369G0093 Trochodendron aralioides HOM05D000167 ORTHO05D000994 8.6e-06 53.1 51 51.0
vmacro10288 Vaccinium macrocarpon HOM05D000167 ORTHO05D000994 8.6e-06 53.1 44 56.8


User provided reference genes

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