Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03030 Coffea canephora HOM05D002297 ORTHO05D002385 4.9e-47 190.7 88 100.0
Cc03_g04420 Coffea canephora HOM05D002297 ORTHO05D002385 3.2e-30 134.8 80 78.8
PGSC0003DMG400006452 Solanum tuberosum HOM05D002297 ORTHO05D002385 2.2e-23 112.1 80 61.2
GSVIVG01018036001 Vitis vinifera HOM05D002297 ORTHO05D002385 2.9e-23 111.7 80 62.5
PGSC0003DMG400016268 Solanum tuberosum HOM05D002297 ORTHO05D002385 4.9e-23 110.9 80 63.8
Hma1.2p1_0549F.1_g176950 Hydrangea macrophylla HOM05D002297 ORTHO05D002385 8.4e-23 110.2 80 65.0
Cc03_g04230 Coffea canephora HOM05D002297 ORTHO05D002385 1.1e-22 109.8 80 62.5
Migut.G00380 Erythranthe guttata HOM05D002297 ORTHO05D002385 1.9e-22 109.0 80 61.2
CAN.G1572.3 Capsicum annuum HOM05D002297 ORTHO05D002385 2.5e-22 108.6 80 61.2
Duzib052G0132 Durio zibethinus HOM05D002297 ORTHO05D002385 2.5e-22 108.6 78 61.5
Duzib052G0105 Durio zibethinus HOM05D002297 ORTHO05D002385 3.2e-22 108.2 78 60.3
Peaxi162Scf00192g01618 Petunia axillaris HOM05D002297 ORTHO05D002385 3.2e-22 108.2 80 62.5
Thecc.04G237900 Theobroma cacao HOM05D002297 ORTHO05D002385 5.5e-22 107.5 80 61.2
TAR636G3074 Trochodendron aralioides HOM05D002297 ORTHO05D002385 5.5e-22 107.5 80 62.5
Nitab4.5_0000321g0220 Nicotiana tabacum HOM05D002297 ORTHO05D002385 7.1e-22 107.1 80 61.2
Nitab4.5_0004412g0010 Nicotiana tabacum HOM05D002297 ORTHO05D002385 7.1e-22 107.1 80 61.2
Nitab4.5_0004743g0040 Nicotiana tabacum HOM05D002297 ORTHO05D002385 9.3e-22 106.7 80 60.0
Haze_11225 Corylus avellana HOM05D002297 ORTHO05D002385 1.2e-21 106.3 79 60.8
MSTRG.9952 Avicennia marina HOM05D002297 ORTHO05D002385 1.6e-21 105.9 80 63.8
Solyc06g053980.3 Solanum lycopersicum HOM05D002297 ORTHO05D002385 1.6e-21 105.9 80 60.0
Atru.chr4.2381 Acer truncatum HOM05D002297 ORTHO05D002385 2.1e-21 105.5 77 61.0
Atru.chr4.2405 Acer truncatum HOM05D002297 ORTHO05D002385 2.1e-21 105.5 77 61.0
Atru.ctg752_3.15 Acer truncatum HOM05D002297 ORTHO05D002385 2.1e-21 105.5 77 61.0
Actinidia08464 Actinidia chinensis HOM05D002297 ORTHO05D002385 2.1e-21 105.5 78 59.0
Oeu017774.1 Olea europaea HOM05D002297 ORTHO05D002385 2.1e-21 105.5 79 60.8
Nn1g02438 Nelumbo nucifera HOM05D002297 ORTHO05D002385 6.1e-21 104.0 79 59.5
PGR142G1644 Punica granatum HOM05D002297 ORTHO05D002385 6.1e-21 104.0 79 59.5
Sopen06g019120 Solanum pennellii HOM05D002297 ORTHO05D002385 6.1e-21 104.0 80 60.0
Solyc09g082600.3 Solanum lycopersicum HOM05D002297 ORTHO05D002385 7.9e-21 103.6 77 58.4
Sopen09g031460 Solanum pennellii HOM05D002297 ORTHO05D002385 7.9e-21 103.6 76 57.9
COL.COLO4_21558 Corchorus olitorius HOM05D002297 ORTHO05D002385 1.0e-20 103.2 80 56.2
Gohir.A10G124100 Gossypium hirsutum HOM05D002297 ORTHO05D002385 1.0e-20 103.2 80 56.2
Gorai.011G170100 Gossypium raimondii HOM05D002297 ORTHO05D002385 1.0e-20 103.2 80 56.2
Cpa.g.sc44.117 Carica papaya HOM05D002297 ORTHO05D002385 1.3e-20 102.8 77 59.7
Gohir.D10G152933 Gossypium hirsutum HOM05D002297 ORTHO05D002385 1.3e-20 102.8 79 55.7
CiPaw.02G121500 Carya illinoinensis HOM05D002297 ORTHO05D002385 1.8e-20 102.4 78 60.3
Cfa008453 Carpinus fangiana HOM05D002297 ORTHO05D002385 2.3e-20 102.1 79 59.5
MD13G1198800 Malus domestica HOM05D002297 ORTHO05D002385 3.9e-20 101.3 77 61.0
Rhsim02G0028600 Rhododendron simsii HOM05D002297 ORTHO05D002385 5.1e-20 100.9 78 59.0
FvH4_4g01061 Fragaria vesca HOM05D002297 ORTHO05D002385 6.7e-20 100.5 81 56.8
CSS0028283 Camellia sinensis var. sinensis HOM05D002297 ORTHO05D002385 8.7e-20 100.1 78 57.7
FAN17G0413 Fragaria x ananassa HOM05D002297 ORTHO05D002385 8.7e-20 100.1 81 55.6
Potri.010G082300 Populus trichocarpa HOM05D002297 ORTHO05D002385 8.7e-20 100.1 79 55.7
QL06p001177 Quercus lobata HOM05D002297 ORTHO05D002385 8.7e-20 100.1 75 57.3
CAN.G231.16 Capsicum annuum HOM05D002297 ORTHO05D002385 1.1e-19 99.8 79 57.0
Lj5g0001502 Lotus japonicus HOM05D002297 ORTHO05D002385 1.1e-19 99.8 80 58.8
TWI73G0082 Tripterygium wilfordii HOM05D002297 ORTHO05D002385 1.1e-19 99.8 74 59.5
ClCG06G006460 Citrullus lanatus HOM05D002297 ORTHO05D002385 1.9e-19 99.0 79 57.0
Lj6g0025608 Lotus japonicus HOM05D002297 ORTHO05D002385 1.9e-19 99.0 80 58.8
Ciclev10005453m.g Citrus clementina HOM05D002297 ORTHO05D002385 3.3e-19 98.2 77 58.4
HanXRQChr05g0137091 Helianthus annuus HOM05D002297 ORTHO05D002385 3.3e-19 98.2 80 55.0
MD16G1199000 Malus domestica HOM05D002297 ORTHO05D002385 4.3e-19 97.8 80 58.8
Sabra10G0060900 Salix brachista HOM05D002297 ORTHO05D002385 4.3e-19 97.8 79 55.7
Lj6C645T4 Lonicera japonica HOM05D002297 ORTHO05D002385 7.4e-19 97.1 78 55.1
Medtr1g041390 Medicago truncatula HOM05D002297 ORTHO05D002385 7.4e-19 97.1 80 57.5
SGA_v2.0_scaffold353G49721 Striga asiatica HOM05D002297 ORTHO05D002385 7.4e-19 97.1 80 57.5
SalBow2G0430 Salvia bowleyana HOM05D002297 ORTHO05D002385 1.6e-18 95.9 81 56.8
CsaV3_2G013440 Cucumis sativus L. HOM05D002297 ORTHO05D002385 2.2e-18 95.5 79 55.7
ECA236G4228 Erigeron canadensis HOM05D002297 ORTHO05D002385 2.8e-18 95.1 80 57.5
Prupe.1G020600 Prunus persica HOM05D002297 ORTHO05D002385 3.7e-18 94.7 78 57.7
Manes.03G173700 Manihot esculenta HOM05D002297 ORTHO05D002385 4.8e-18 94.4 79 55.7
RhsimUnG0024600 Rhododendron simsii HOM05D002297 ORTHO05D002385 4.8e-18 94.4 78 56.4
AL8G16280 Arabidopsis lyrata HOM05D002297 ORTHO05D002385 6.3e-18 94.0 81 54.3
AT5G43860 Arabidopsis thaliana HOM05D002297 ORTHO05D002385 6.3e-18 94.0 81 53.1
TPR.G32760 Trifolium pratense HOM05D002297 ORTHO05D002385 8.2e-18 93.6 80 53.8
vmacro15369 Vaccinium macrocarpon HOM05D002297 ORTHO05D002385 8.2e-18 93.6 76 56.6
CANSAT78G1821 Cannabis sativa HOM05D002297 ORTHO05D002385 1.4e-17 92.8 76 53.9
MBI01_g45161_MAGBIO Magnolia biondii HOM05D002297 ORTHO05D002385 1.4e-17 92.8 80 51.2
Psat6g103560 Pisum sativum HOM05D002297 ORTHO05D002385 1.4e-17 92.8 73 54.8
Glyma.10G003200 Glycine max HOM05D002297 ORTHO05D002385 2.4e-17 92.0 78 53.8
unitig_32.g10822 Utricularia gibba HOM05D002297 ORTHO05D002385 4.1e-17 91.3 77 51.9
Medtr1g041385 Medicago truncatula HOM05D002297 ORTHO05D002385 5.3e-17 90.9 78 52.6
Phvul.007G278100 Phaseolus vulgaris HOM05D002297 ORTHO05D002385 5.3e-17 90.9 73 56.2
Lalb_Chr19g0127931 Lupinus albus HOM05D002297 ORTHO05D002385 6.9e-17 90.5 80 55.0
DCAR_024190 Daucus carota HOM05D002297 ORTHO05D002385 9.0e-17 90.1 79 53.2
FvH4_4g00030 Fragaria vesca HOM05D002297 ORTHO05D002385 1.2e-16 89.7 81 53.1
VMungo0720G0724 Vigna mungo HOM05D002297 ORTHO05D002385 1.2e-16 89.7 78 51.3
Sp2g08660 Schrenkiella parvula HOM05D002297 ORTHO05D002385 2.0e-16 89.0 77 54.5
Sed0026619 Sechium edule HOM05D002297 ORTHO05D002385 2.0e-16 89.0 79 50.6
Lsat_1_v5_gn_8_66120 Lactuca sativa HOM05D002297 ORTHO05D002385 2.6e-16 88.6 80 52.5
BcaB07g30554 Brassica carinata HOM05D002297 ORTHO05D002385 3.4e-16 88.2 77 53.2
Lalb_Chr19g0127911 Lupinus albus HOM05D002297 ORTHO05D002385 3.4e-16 88.2 73 56.2
Sc13g0004700 Simmondsia chinensis HOM05D002297 ORTHO05D002385 3.4e-16 88.2 78 50.0
PGR142G3051 Punica granatum HOM05D002297 ORTHO05D002385 4.5e-16 87.8 78 51.3
Hund12140 Selenicereus undatus HOM05D002297 ORTHO05D002385 4.5e-16 87.8 76 51.3
Aqoxy2G03456 Aquilegia oxysepala HOM05D002297 ORTHO05D002385 5.9e-16 87.4 76 51.3
ECA236G1644 Erigeron canadensis HOM05D002297 ORTHO05D002385 1.0e-15 86.7 80 52.5
Thhalv10003248m.g Eutrema salsugineum HOM05D002297 ORTHO05D002385 1.0e-15 86.7 77 54.5
A02p28090 Brassica napus HOM05D002297 ORTHO05D002385 1.3e-15 86.3 77 50.6
CARHR179570 Cardamine hirsuta HOM05D002297 ORTHO05D002385 1.3e-15 86.3 81 50.6
Eucgr.B01021 Eucalyptus grandis HOM05D002297 ORTHO05D002385 1.3e-15 86.3 72 51.4
Eucgr.L03228 Eucalyptus grandis HOM05D002297 ORTHO05D002385 1.3e-15 86.3 72 51.4
PSO832G2818 Papaver somniferum HOM05D002297 ORTHO05D002385 1.3e-15 86.3 78 50.0
ATR0665G125 Amborella trichopoda HOM05D002297 ORTHO05D002385 1.7e-15 85.9 76 50.0
TPR.G18666 Trifolium pratense HOM05D002297 ORTHO05D002385 1.7e-15 85.9 80 47.5
BcaC03g16610 Brassica carinata HOM05D002297 ORTHO05D002385 2.2e-15 85.5 77 50.6
C02p44390 Brassica napus HOM05D002297 ORTHO05D002385 2.2e-15 85.5 77 50.6
BraA02t07845Z Brassica rapa HOM05D002297 ORTHO05D002385 2.2e-15 85.5 77 50.6
PSO170G4947 Papaver somniferum HOM05D002297 ORTHO05D002385 3.8e-15 84.7 80 50.0
Lj6A644T31 Lonicera japonica HOM05D002297 ORTHO05D002385 6.5e-15 84.0 68 52.9
Sc19g0003970 Simmondsia chinensis HOM05D002297 ORTHO05D002385 6.5e-15 84.0 77 50.6
Aa31LG5G3430 Aethionema arabicum HOM05D002297 ORTHO05D002385 8.5e-15 83.6 81 48.1
A09p20590 Brassica napus HOM05D002297 ORTHO05D002385 8.5e-15 83.6 77 51.9
Carub.0008s0475 Capsella rubella HOM05D002297 ORTHO05D002385 8.5e-15 83.6 76 50.0
EL10Ac3g06447 Beta vulgaris HOM05D002297 ORTHO05D002385 1.1e-14 83.2 75 49.3
BcaC04g21898 Brassica carinata HOM05D002297 ORTHO05D002385 1.1e-14 83.2 78 51.3
C09p26030 Brassica napus HOM05D002297 ORTHO05D002385 1.1e-14 83.2 78 51.3
BolC9t55506H Brassica oleracea HOM05D002297 ORTHO05D002385 1.1e-14 83.2 78 51.3
BolC2t10484H Brassica oleracea HOM05D002297 ORTHO05D002385 1.9e-14 82.4 77 49.4
CiPaw.01G195900 Carya illinoinensis HOM05D002297 ORTHO05D002385 2.5e-14 82.0 72 50.0
BraA09t37665Z Brassica rapa HOM05D002297 ORTHO05D002385 3.2e-14 81.6 77 50.6
AUR62034689 Chenopodium quinoa HOM05D002297 ORTHO05D002385 4.2e-14 81.3 75 46.7
CDE02G2392 Ceratophyllum demersum HOM05D002297 ORTHO05D002385 5.5e-14 80.9 76 46.1
Haze_06526 Corylus avellana HOM05D002297 ORTHO05D002385 5.5e-14 80.9 77 49.4
PSO017G2211 Papaver somniferum HOM05D002297 ORTHO05D002385 5.5e-14 80.9 78 48.7
PSO210G0891 Papaver somniferum HOM05D002297 ORTHO05D002385 5.5e-14 80.9 80 47.5
PSO210G7048 Papaver somniferum HOM05D002297 ORTHO05D002385 7.2e-14 80.5 73 52.1
PSO675G2441 Papaver somniferum HOM05D002297 ORTHO05D002385 7.2e-14 80.5 78 47.4
TPR.G19819 Trifolium pratense HOM05D002297 ORTHO05D002385 7.2e-14 80.5 80 45.0
Ah.13g071770 Amaranthus hybridus HOM05D002297 ORTHO05D002385 9.4e-14 80.1 76 51.3
BcaB07g30999 Brassica carinata HOM05D002297 ORTHO05D002385 9.4e-14 80.1 78 48.7
arahy.Tifrunner.gnm1.ann1.BH7WK9 Arachis hypogaea HOM05D002297 ORTHO05D002385 1.6e-13 79.3 74 52.7
arahy.Tifrunner.gnm1.ann1.RQXR90 Arachis hypogaea HOM05D002297 ORTHO05D002385 1.6e-13 79.3 74 52.7
CDE05G3068 Ceratophyllum demersum HOM05D002297 ORTHO05D002385 1.6e-13 79.3 76 46.1
AUR62024085 Chenopodium quinoa HOM05D002297 ORTHO05D002385 1.6e-13 79.3 75 45.3
TAR362G0227 Trochodendron aralioides HOM05D002297 ORTHO05D002385 2.3e-12 75.5 78 47.4
Eucgr.B01022 Eucalyptus grandis HOM05D002297 ORTHO05D002385 3.0e-12 75.1 72 50.0
QL05p038725 Quercus lobata HOM05D002297 ORTHO05D002385 5.1e-12 74.3 79 48.1
QL12p041679 Quercus lobata HOM05D002297 ORTHO05D002385 5.1e-12 74.3 79 48.1
MBI11_g12660_MAGBIO Magnolia biondii HOM05D002297 ORTHO05D002385 1.1e-11 73.2 76 46.1
TAR636G0339 Trochodendron aralioides HOM05D002297 ORTHO05D002385 1.1e-11 73.2 57 57.9
TAR633G0960 Trochodendron aralioides HOM05D002297 ORTHO05D002385 1.5e-11 72.8 77 46.8
FAN12G3816 Fragaria x ananassa HOM05D002297 ORTHO05D002385 7.4e-11 70.5 62 50.0
HPP92_024353 Vanilla planifolia HOM05D002297 ORTHO05D002385 9.7e-11 70.1 78 41.0
HanXRQChr17g0534671 Helianthus annuus HOM05D002297 ORTHO05D002385 3.7e-10 68.2 68 44.1
Lsat_1_v5_gn_8_66180 Lactuca sativa HOM05D002297 ORTHO05D002385 4.8e-10 67.8 79 39.2
Duzib138G1335 Durio zibethinus HOM05D002297 ORTHO05D002385 1.1e-09 66.6 78 41.0
MD03G1259100 Malus domestica HOM05D002297 ORTHO05D002385 1.1e-09 66.6 78 43.6
CANSAT11G1189 Cannabis sativa HOM05D002297 ORTHO05D002385 1.4e-09 66.2 79 45.6
Gohir.D08G205500 Gossypium hirsutum HOM05D002297 ORTHO05D002385 1.8e-09 65.9 78 41.0
Psat1g035200 Pisum sativum HOM05D002297 ORTHO05D002385 1.8e-09 65.9 78 39.7
Aqoxy5G00410 Aquilegia oxysepala HOM05D002297 ORTHO05D002385 2.4e-09 65.5 80 45.0
MD03G1259000 Malus domestica HOM05D002297 ORTHO05D002385 2.4e-09 65.5 78 42.3
SEGI_36532 Sequoiadendron giganteum HOM05D002297 ORTHO05D002385 2.4e-09 65.5 79 36.7
RcHm_v2.0_Chr6g0290141 Rosa chinensis HOM05D002297 ORTHO05D002385 3.1e-09 65.1 79 40.5
SEGI_15049 Sequoiadendron giganteum HOM05D002297 ORTHO05D002385 3.1e-09 65.1 72 38.9
Prupe.8G235600 Prunus persica HOM05D002297 ORTHO05D002385 4.1e-09 64.7 78 39.7
arahy.Tifrunner.gnm1.ann1.KM44SA Arachis hypogaea HOM05D002297 ORTHO05D002385 6.9e-09 63.9 80 43.8
MD11G1279400 Malus domestica HOM05D002297 ORTHO05D002385 6.9e-09 63.9 78 42.3
TWI18G1343 Tripterygium wilfordii HOM05D002297 ORTHO05D002385 6.9e-09 63.9 78 41.0
FvH4_2g23050 Fragaria vesca HOM05D002297 ORTHO05D002385 1.2e-08 63.2 79 43.0
FAN15G1443 Fragaria x ananassa HOM05D002297 ORTHO05D002385 1.2e-08 63.2 79 43.0
FAN15G3311 Fragaria x ananassa HOM05D002297 ORTHO05D002385 1.2e-08 63.2 79 43.0
FAN24G1324 Fragaria x ananassa HOM05D002297 ORTHO05D002385 1.2e-08 63.2 79 43.0
Gohir.A08G187200 Gossypium hirsutum HOM05D002297 ORTHO05D002385 1.2e-08 63.2 78 39.7
arahy.Tifrunner.gnm1.ann1.P5HFKM Arachis hypogaea HOM05D002297 ORTHO05D002385 2.0e-08 62.4 80 42.5
FAN27G0293 Fragaria x ananassa HOM05D002297 ORTHO05D002385 3.4e-08 61.6 79 41.8
FAN27G0610 Fragaria x ananassa HOM05D002297 ORTHO05D002385 3.4e-08 61.6 79 41.8
Nn1g02437 Nelumbo nucifera HOM05D002297 ORTHO05D002385 4.5e-08 61.2 76 40.8
Lj2g0003105 Lotus japonicus HOM05D002297 ORTHO05D002385 5.9e-08 60.8 73 43.8
Pp3c20_7990 Physcomitrium patens HOM05D002297 ORTHO05D002385 1.0e-07 60.1 77 40.3
CARHR020190 Cardamine hirsuta HOM05D002297 ORTHO05D002385 1.7e-07 59.3 74 39.2
CBR_g50396 Chara braunii HOM05D002297 ORTHO05D002385 1.7e-07 59.3 71 38.0
Medtr6g082500 Medicago truncatula HOM05D002297 ORTHO05D002385 1.7e-07 59.3 77 37.7
Oeu015671.1 Olea europaea HOM05D002297 ORTHO05D002385 1.7e-07 59.3 76 44.7
Gorai.004G217500 Gossypium raimondii HOM05D002297 ORTHO05D002385 2.2e-07 58.9 71 40.8
Os10g0419600 Oryza sativa ssp. japonica HOM05D002297 ORTHO05D002385 2.2e-07 58.9 77 36.4
GSVIVG01001207001 Vitis vinifera HOM05D002297 ORTHO05D002385 2.2e-07 58.9 68 45.6
Ciclev10021103m.g Citrus clementina HOM05D002297 ORTHO05D002385 2.9e-07 58.5 83 39.8
Thhalv10008201m.g Eutrema salsugineum HOM05D002297 ORTHO05D002385 2.9e-07 58.5 73 39.7
Mapoly0008s0177 Marchantia polymorpha HOM05D002297 ORTHO05D002385 2.9e-07 58.5 77 39.0
Manes.01G204500 Manihot esculenta HOM05D002297 ORTHO05D002385 8.5e-07 57.0 76 38.2
Sp1g17510 Schrenkiella parvula HOM05D002297 ORTHO05D002385 1.1e-06 56.6 73 37.0
Mapoly0050s0025 Marchantia polymorpha HOM05D002297 ORTHO05D002385 1.4e-06 56.2 73 38.4
Carub.0001s1921 Capsella rubella HOM05D002297 ORTHO05D002385 5.5e-06 54.3 73 37.0
Migut.O00579 Erythranthe guttata HOM05D002297 ORTHO05D002385 5.5e-06 54.3 78 41.0
AT1G19670 Arabidopsis thaliana HOM05D002297 ORTHO05D002385 7.2e-06 53.9 73 37.0
Eucgr.B01020 Eucalyptus grandis HOM05D002297 ORTHO05D002385 9.4e-06 53.5 45 46.7


User provided reference genes

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