Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 5.2e-100 367.9 202 100.0
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.4e-65 253.4 167 71.9
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 3.5e-64 248.8 167 69.5
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 6.0e-64 248.1 167 68.9
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 3.0e-63 245.7 167 70.7
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 1.9e-62 243.0 167 69.5
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 2.5e-62 242.7 167 69.5
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 1.4e-60 236.9 199 61.3
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 4.1e-57 225.3 200 58.0
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 4.3e-54 215.3 197 55.8
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 2.8e-53 212.6 164 64.6
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 1.1e-52 210.7 164 61.6
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 1.4e-52 210.3 209 54.1
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 3.4e-51 205.7 164 61.6
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 1.3e-50 203.8 158 62.7
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 2.9e-50 202.6 195 55.4
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 6.4e-50 201.4 157 60.5
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 2.4e-49 199.5 208 51.9
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 3.2e-49 199.1 157 61.8
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 4.1e-49 198.7 182 57.1
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 4.1e-49 198.7 208 52.9
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 5.4e-49 198.4 182 57.1
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 5.4e-49 198.4 158 60.1
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.2e-48 197.2 155 60.6
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 1.2e-48 197.2 160 61.2
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 2.7e-48 196.1 157 61.1
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 3.5e-48 195.7 157 59.9
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 1.0e-47 194.1 158 61.4
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.3e-47 193.7 159 59.7
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 1.7e-47 193.4 158 60.1
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 2.3e-47 193.0 208 51.4
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 3.9e-47 192.2 209 51.2
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 5.1e-47 191.8 158 59.5
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 6.6e-47 191.4 158 62.0
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 2.5e-46 189.5 209 50.2
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 3.3e-46 189.1 198 51.5
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 5.6e-46 188.3 158 60.1
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 7.3e-46 188.0 184 53.8
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 1.2e-45 187.2 158 60.8
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 1.6e-45 186.8 209 49.8
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 3.6e-45 185.7 159 55.3
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 3.6e-45 185.7 204 49.0
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 4.7e-45 185.3 158 58.9
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 4.7e-45 185.3 208 49.5
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 6.2e-45 184.9 167 55.7
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 8.1e-45 184.5 164 58.5
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 8.1e-45 184.5 124 71.0
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 1.1e-44 184.1 158 60.1
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 1.1e-44 184.1 173 57.2
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 1.4e-44 183.7 146 59.6
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 1.4e-44 183.7 158 58.9
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 1.4e-44 183.7 153 58.8
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 3.1e-44 182.6 160 56.9
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 4.0e-44 182.2 162 58.0
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 4.0e-44 182.2 163 56.4
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 4.0e-44 182.2 161 57.1
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 5.2e-44 181.8 158 58.9
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 6.8e-44 181.4 154 57.8
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 6.8e-44 181.4 159 57.2
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 6.8e-44 181.4 157 59.2
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 6.8e-44 181.4 158 56.3
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 8.9e-44 181.0 159 55.3
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 8.9e-44 181.0 156 55.1
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.2e-43 180.6 163 57.1
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.2e-43 180.6 162 57.4
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.2e-43 180.6 162 57.4
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 1.2e-43 180.6 156 55.8
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 2.0e-43 179.9 158 58.2
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 3.4e-43 179.1 161 57.1
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 3.4e-43 179.1 210 49.5
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 1.3e-42 177.2 158 57.0
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 1.3e-42 177.2 166 51.8
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 2.2e-42 176.4 158 56.3
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 2.2e-42 176.4 158 56.3
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 2.2e-42 176.4 158 56.3
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 2.2e-42 176.4 158 56.3
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.2e-42 176.4 162 56.8
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 2.9e-42 176.0 160 56.2
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 2.9e-42 176.0 201 49.8
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 3.8e-42 175.6 158 56.3
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 6.4e-42 174.9 190 51.6
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 3.2e-41 172.6 201 56.7
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 3.2e-41 172.6 159 57.2
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 4.2e-41 172.2 170 51.8
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 4.2e-41 172.2 151 58.3
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 1.2e-40 170.6 151 57.6
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 2.7e-40 169.5 160 51.2
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 7.8e-40 167.9 158 57.6
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 1.7e-39 166.8 123 65.0
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 1.7e-39 166.8 166 50.6
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 5.1e-39 165.2 144 54.2
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 3.6e-37 159.1 200 47.0
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.2e-37 158.3 166 49.4
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 2.9e-34 149.4 124 58.1
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 1.4e-33 147.1 138 52.9
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 5.4e-33 145.2 124 57.3
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 6.0e-32 141.7 122 58.2
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.1e-30 137.5 122 58.2
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 1.4e-28 130.6 125 51.2
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 2.0e-27 126.7 183 41.5
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 3.8e-26 122.5 98 59.2
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 1.6e-24 117.1 103 56.3
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 3.5e-24 115.9 128 43.8
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 1.8e-23 113.6 114 49.1
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 3.0e-23 112.8 102 54.9
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 6.7e-23 111.7 88 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 8.7e-23 111.3 108 46.3
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 2.5e-22 109.8 83 63.9
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 5.6e-22 108.6 95 60.0
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 4.8e-21 105.5 119 48.7
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 1.3e-18 97.4 80 57.5
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 1.7e-18 97.1 121 37.2
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 1.7e-18 97.1 121 37.2
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 2.5e-17 93.2 90 54.4
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 5.5e-17 92.0 221 33.0
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 1.2e-16 90.9 79 59.5
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 4.6e-16 89.0 87 52.9
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 1.3e-15 87.4 68 60.3
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 3.9e-15 85.9 71 57.7
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 7.4e-14 81.6 106 36.8
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.6e-13 80.5 79 57.0
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 1.7e-10 70.5 68 48.5
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 5.0e-10 68.9 68 47.1
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 5.0e-10 68.9 57 57.9
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 2.5e-09 66.6 63 50.8
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 7.1e-09 65.1 108 36.1
SGA_v2.0_scaffold74G24592 Striga asiatica HOM05D000172 ORTHO05D008216 6.1e-08 62.0 71 43.7
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 3.0e-07 59.7 63 46.0
SHI10091 Sapria himalayana HOM05D000172 ORTHO05D008216 1.1e-06 57.8 40 60.0
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.1e-06 57.8 44 56.8


User provided reference genes

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