Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 2.6e-44 181.8 100 100.0
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 9.0e-13 77.0 68 60.3
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 4.9e-11 71.2 71 52.1
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 2.7e-09 65.5 65 49.2
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 2.7e-09 65.5 75 49.3
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.7e-09 65.5 68 50.0
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 4.6e-09 64.7 75 48.0
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 4.6e-09 64.7 78 47.4
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 1.0e-08 63.5 77 44.2
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.0e-08 63.5 66 53.0
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.0e-08 63.5 75 48.0
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.8e-08 62.8 66 51.5
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 1.8e-08 62.8 66 51.5
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 2.3e-08 62.4 66 48.5
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 2.3e-08 62.4 66 53.0
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 3.0e-08 62.0 75 45.3
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 3.0e-08 62.0 75 48.0
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 3.0e-08 62.0 66 50.0
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 3.0e-08 62.0 75 49.3
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.9e-08 61.6 66 48.5
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.9e-08 61.6 66 51.5
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.9e-08 61.6 66 51.5
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 5.1e-08 61.2 66 50.0
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 5.1e-08 61.2 74 45.9
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 6.7e-08 60.8 75 48.0
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 6.7e-08 60.8 66 50.0
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 8.7e-08 60.5 66 50.0
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 8.7e-08 60.5 75 45.3
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 8.7e-08 60.5 67 47.8
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 8.7e-08 60.5 75 46.7
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.1e-07 60.1 66 50.0
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.1e-07 60.1 66 48.5
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 1.1e-07 60.1 75 44.0
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.1e-07 60.1 66 51.5
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 1.5e-07 59.7 66 50.0
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 1.5e-07 59.7 77 42.9
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-07 59.7 77 42.9
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-07 59.7 77 42.9
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-07 59.7 77 42.9
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-07 59.7 77 42.9
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-07 59.7 77 42.9
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-07 59.7 77 42.9
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-07 59.7 77 42.9
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.5e-07 59.7 71 46.5
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.5e-07 59.7 36 63.9
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.9e-07 59.3 66 48.5
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.9e-07 59.3 75 49.3
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.9e-07 59.3 71 47.9
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.5e-07 58.9 38 57.9
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.5e-07 58.9 66 50.0
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 2.5e-07 58.9 75 46.7
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.3e-07 58.5 38 63.2
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 4.3e-07 58.2 65 49.2
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.3e-07 58.2 75 52.0
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 4.3e-07 58.2 75 52.0
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 4.3e-07 58.2 66 47.0
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 4.3e-07 58.2 66 47.0
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 4.3e-07 58.2 66 48.5
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 5.7e-07 57.8 68 47.1
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 5.7e-07 57.8 75 45.3
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 7.4e-07 57.4 68 50.0
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 7.4e-07 57.4 35 71.4
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 7.4e-07 57.4 66 48.5
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.4e-07 57.4 66 47.0
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 7.4e-07 57.4 74 45.9
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 9.6e-07 57.0 66 48.5
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 9.6e-07 57.0 75 44.0
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 9.6e-07 57.0 35 71.4
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 9.6e-07 57.0 65 49.2
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.3e-06 56.6 65 49.2
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.3e-06 56.6 74 51.4
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.3e-06 56.6 74 44.6
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.6e-06 56.2 66 48.5
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.6e-06 56.2 68 47.1
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.6e-06 56.2 75 45.3
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.6e-06 56.2 75 42.7
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 1.6e-06 56.2 66 47.0
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.6e-06 56.2 75 49.3
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.6e-06 56.2 74 45.9
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 2.1e-06 55.8 66 47.0
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 2.1e-06 55.8 66 47.0
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.8e-06 55.5 35 68.6
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.8e-06 55.5 35 68.6
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 2.8e-06 55.5 66 42.4
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.7e-06 55.1 74 39.2
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 3.7e-06 55.1 71 40.8
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 4.8e-06 54.7 66 48.5
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 4.8e-06 54.7 66 47.0
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 4.8e-06 54.7 65 46.2
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 4.8e-06 54.7 65 46.2
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.8e-06 54.7 78 38.5
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.8e-06 54.7 78 39.7
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 8.2e-06 53.9 66 40.9


User provided reference genes

Program Settings