Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 2.3e-58 229.2 160 100.0
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 8.1e-40 167.5 97 86.6
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 1.8e-39 166.4 179 72.6
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 2.4e-39 166.0 165 78.8
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 9.9e-38 160.6 168 75.6
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 9.9e-38 160.6 97 81.4
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.7e-37 159.8 96 83.3
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 1.7e-37 159.8 196 68.4
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 2.2e-37 159.5 170 60.0
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 2.2e-37 159.5 103 81.6
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 2.2e-37 159.5 96 84.4
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 3.8e-37 158.7 99 82.8
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 3.8e-37 158.7 95 84.2
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.1e-36 157.1 173 73.4
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.1e-36 157.1 159 63.5
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.4e-36 156.8 173 73.4
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 2.4e-36 156.0 99 82.8
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 3.2e-36 155.6 96 80.2
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 3.2e-36 155.6 95 83.2
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 3.2e-36 155.6 99 78.8
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 7.1e-36 154.5 97 79.4
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 9.3e-36 154.1 173 72.3
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 1.6e-35 153.3 182 69.8
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 4.6e-35 151.8 163 74.8
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 6.0e-35 151.4 96 77.1
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 6.0e-35 151.4 161 71.4
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 1.0e-34 150.6 97 77.3
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.0e-34 150.6 153 69.9
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.0e-34 150.6 96 82.3
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.0e-34 149.1 97 76.3
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.0e-34 149.1 97 76.3
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 3.0e-34 149.1 95 77.9
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 3.0e-34 149.1 97 76.3
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 3.9e-34 148.7 97 75.3
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 3.9e-34 148.7 97 75.3
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 5.1e-34 148.3 97 75.3
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 8.7e-34 147.5 160 60.0
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.1e-33 147.1 153 60.8
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 1.5e-33 146.7 167 68.9
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 1.9e-33 146.4 98 75.5
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 1.9e-33 146.4 93 78.5
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 2.5e-33 146.0 98 75.5
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 3.3e-33 145.6 97 74.2
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 5.6e-33 144.8 97 74.2
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 7.3e-33 144.4 93 77.4
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 9.6e-33 144.1 96 76.0
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 1.3e-32 143.7 97 72.2
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 1.6e-32 143.3 97 73.2
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 1.6e-32 143.3 97 74.2
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 2.1e-32 142.9 97 73.2
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.8e-32 142.5 155 72.3
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 3.6e-32 142.1 97 72.2
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 3.6e-32 142.1 156 72.4
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 3.6e-32 142.1 97 73.2
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 3.6e-32 142.1 97 73.2
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 3.6e-32 142.1 97 73.2
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.1e-31 140.6 97 72.2
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 1.4e-31 140.2 97 72.2
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 2.4e-31 139.4 97 71.1
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 2.4e-31 139.4 89 82.0
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 4.0e-31 138.7 101 75.2
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 1.2e-30 137.1 88 75.0
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 2.0e-30 136.3 95 72.6
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 3.4e-30 135.6 95 72.6
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 5.8e-30 134.8 95 70.5
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 7.6e-30 134.4 95 71.6
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.3e-29 133.7 162 46.3
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 1.7e-29 133.3 96 71.9
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 1.7e-29 133.3 86 76.7
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 2.9e-29 132.5 95 69.5
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 4.9e-29 131.7 96 70.8
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 4.9e-29 131.7 141 70.9
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 6.4e-29 131.3 141 63.1
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 6.4e-29 131.3 91 65.9
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 8.4e-29 131.0 84 76.2
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 1.4e-28 130.2 86 74.4
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.9e-28 129.8 96 69.8
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 4.2e-28 128.6 96 68.8
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 7.1e-28 127.9 85 77.6
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 2.1e-27 126.3 85 75.3
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 2.3e-26 122.9 85 72.9
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 5.1e-26 121.7 79 77.2
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 4.3e-25 118.6 124 54.0
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.3e-24 117.1 77 75.3
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 1.3e-24 117.1 97 69.1
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 2.8e-24 115.9 88 63.6
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 6.2e-24 114.8 97 68.0
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 2.4e-23 112.8 94 62.8
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 2.4e-23 112.8 79 74.7
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 2.4e-23 112.8 79 74.7
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 2.6e-22 109.4 91 59.3
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 2.6e-22 109.4 91 59.3
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 5.8e-22 108.2 94 57.4
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 5.8e-22 108.2 94 57.4
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 5.8e-22 108.2 94 57.4
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 5.8e-22 108.2 104 59.6
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 3.8e-21 105.5 97 58.8
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 3.8e-21 105.5 96 56.2
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 5.5e-20 101.7 95 56.8
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 1.6e-19 100.1 80 73.8
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 4.6e-19 98.6 79 70.9
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 3.0e-18 95.9 123 55.3
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 3.0e-18 95.9 97 55.7
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 6.7e-18 94.7 81 65.4
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 8.7e-18 94.4 80 71.2
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 3.3e-17 92.4 87 60.9
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 3.3e-17 92.4 87 60.9
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 7.4e-17 91.3 97 54.6
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 8.2e-16 87.8 148 59.5
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 1.4e-15 87.0 89 59.6
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 1.8e-15 86.7 50 82.0
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 9.0e-15 84.3 75 61.3
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.0e-14 83.2 80 55.0
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 7.6e-14 81.3 89 50.6
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 1.9e-12 76.6 87 50.6
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 5.5e-12 75.1 48 72.9
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 2.3e-10 69.7 73 53.4
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 9.7e-09 64.3 93 38.7
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 4.8e-08 62.0 60 50.0
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 4.8e-08 62.0 45 68.9
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 1.1e-07 60.8 97 42.3
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 3.1e-07 59.3 97 41.2
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 5.9e-06 55.1 59 47.5


User provided reference genes

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