Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1492.6 732 100.0
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1400.6 732 93.6
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1377.8 732 90.6
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1375.1 730 90.7
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1359.4 732 88.7
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1356.7 732 89.2
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1356.3 732 89.2
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1354.7 732 89.5
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1349.7 732 89.1
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1347.8 732 88.5
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1343.6 732 88.5
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1342.8 724 89.5
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1340.5 732 88.5
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1336.2 731 87.7
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1333.2 732 87.7
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1330.9 730 86.3
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1330.5 733 87.0
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1328.5 733 87.6
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1326.6 747 86.5
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1323.9 733 86.8
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1323.5 734 86.2
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1322.8 733 86.6
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1322.4 732 86.2
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1321.2 732 86.6
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1321.2 782 83.1
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1320.4 732 86.6
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1320.1 734 86.9
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1319.7 733 86.6
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1316.6 734 86.2
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1316.6 732 86.9
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1316.2 733 86.1
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1315.1 732 85.5
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1314.7 730 85.6
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1314.7 732 85.5
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1314.7 734 85.7
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1313.5 730 85.5
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1313.5 730 85.5
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 732 85.5
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1312.4 733 85.9
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1311.2 733 86.4
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1310.4 697 90.1
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1308.1 733 85.9
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1307.7 730 85.6
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 734 85.4
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 730 86.2
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1304.3 734 85.3
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1303.9 732 85.7
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1303.5 732 86.2
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1303.5 732 85.5
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1303.5 774 81.9
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1302.3 776 82.0
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1301.6 732 86.2
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1300.8 735 84.5
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1300.4 735 84.4
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1298.1 732 85.4
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1296.6 733 85.0
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1294.6 732 84.8
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1291.2 749 84.2
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1290.8 779 80.4
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1290.8 779 80.4
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1285.0 733 84.7
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1281.2 732 83.1
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1280.8 732 83.6
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1280.8 732 83.6
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1280.0 732 83.5
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1279.6 732 83.5
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1276.9 732 83.2
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1276.9 730 85.6
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1276.5 733 84.2
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1275.4 732 83.3
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1275.4 732 83.7
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1275.0 732 83.6
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1274.6 732 83.5
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1274.6 732 85.7
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1273.8 732 82.9
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1273.8 735 82.9
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1273.5 732 83.3
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1273.5 732 83.9
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1273.5 735 83.8
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1272.7 732 83.3
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1272.3 732 83.2
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1269.2 732 83.3
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1268.1 732 83.1
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1267.7 734 83.7
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1266.1 732 82.8
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 732 82.9
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 732 82.9
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1264.6 734 82.8
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1263.4 732 83.2
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 732 82.5
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1257.7 733 82.1
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1255.4 723 82.8
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1242.3 830 74.8
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1239.6 732 82.2
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1238.8 732 82.8
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1229.5 736 79.6
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1229.2 706 81.9
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1228.8 735 81.6
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1227.6 663 88.4
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1227.6 732 81.8
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1221.8 733 79.5
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1221.5 744 79.8
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1220.7 744 79.8
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1220.3 743 79.8
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1219.5 751 78.2
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1213.0 727 79.9
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1199.1 735 79.5
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1181.8 659 86.2
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1173.3 667 85.0
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1172.5 695 79.4
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1156.0 742 75.1
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1145.2 733 74.6
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1142.9 696 77.3
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1139.4 616 89.0
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1136.3 707 75.8
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1130.2 616 88.0
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1114.4 734 73.2
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 0.0e+00 1103.6 585 90.6
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1077.0 732 73.1
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 1.0e-311 1072.8 733 71.2
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 7.9e-308 1060.1 752 71.1
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 1.3e-307 1059.3 706 72.7
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 3.9e-283 978.0 701 69.0
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 5.2e-283 977.6 736 64.0
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 2.6e-279 965.3 731 64.4
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.0e-278 963.4 733 63.8
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.7e-257 891.7 506 86.6
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 3.5e-255 885.2 689 61.4
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 3.3e-253 878.6 567 75.3
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.6e-252 876.3 656 64.5
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 1.8e-251 872.8 672 63.1
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 5.4e-248 861.3 697 60.1
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 9.5e-237 823.9 705 58.0
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 6.2e-236 821.2 507 78.9
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 4.3e-229 798.5 784 53.4
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 3.6e-220 768.8 417 87.8
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 2.8e-204 716.1 710 52.0
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.3e-182 643.3 422 73.5
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 3.2e-160 569.7 377 71.9
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 8.5e-153 545.0 303 89.1
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 8.8e-150 535.0 318 81.1
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.4e-147 525.8 358 73.2
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 5.0e-145 519.2 345 76.2
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 2.3e-137 493.8 349 75.1
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.6e-128 462.6 337 68.5
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.7e-113 414.5 288 70.8
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.2e-109 401.7 314 64.6
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 4.5e-93 346.7 183 83.1
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.6e-90 338.2 209 77.0
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 5.7e-80 303.1 425 45.9
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.6e-74 285.0 352 48.6
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 5.1e-73 280.0 189 68.8
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 2.5e-72 277.7 221 64.7
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 7.2e-67 259.6 215 61.4
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 2.7e-66 257.7 204 65.7
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 2.3e-49 201.4 206 53.9
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 2.7e-45 188.0 207 52.7
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-45 186.8 101 79.2
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.7e-44 185.3 219 43.4
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-43 182.6 101 79.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 6.8e-33 146.7 80 80.0
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 1.8e-30 138.7 139 53.2
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 7.7e-29 133.3 161 50.3
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 6.8e-25 120.2 128 53.1
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.4e-22 112.5 187 36.9
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 4.1e-22 110.9 187 36.9
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.2e-21 109.4 63 73.0
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 5.9e-21 107.1 130 52.3
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 1.7e-20 105.5 60 80.0
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 2.5e-19 101.7 110 54.5
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.0e-17 96.3 111 47.7
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 4.0e-17 94.4 54 75.9
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-14 86.3 74 59.5
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-14 85.9 73 60.3
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 2.8e-10 71.6 45 77.8
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 1.4e-09 69.3 50 70.0
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 8.9e-09 66.6 40 75.0
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 2.9e-07 61.6 34 88.2
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 1.9e-06 58.9 44 72.7
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 3.2e-06 58.2 52 57.7


User provided reference genes

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