Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 1.2e-135 486.5 245 100.0
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 2.5e-72 276.2 245 56.3
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 5.2e-70 268.5 246 57.3
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 1.3e-68 263.8 246 53.7
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 5.0e-65 251.9 245 55.1
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 3.2e-64 249.2 245 49.8
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 1.6e-63 246.9 245 51.8
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 4.7e-63 245.4 245 50.6
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 6.1e-63 245.0 246 52.4
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 8.8e-62 241.1 246 50.8
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 2.0e-61 240.0 245 49.4
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 2.6e-61 239.6 246 50.0
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 3.4e-61 239.2 245 51.4
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 3.4e-61 239.2 245 51.0
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 3.4e-61 239.2 246 48.4
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 1.3e-60 237.3 245 49.8
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 2.8e-60 236.1 247 48.6
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 2.8e-60 236.1 245 51.0
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 8.3e-60 234.6 245 50.2
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 1.4e-59 233.8 246 50.0
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 4.1e-59 232.3 246 50.0
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 1.2e-58 230.7 246 49.6
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 1.6e-58 230.3 246 46.7
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 1.7e-57 226.9 247 48.6
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 2.3e-57 226.5 245 49.4
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 8.6e-57 224.6 247 47.8
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 2.5e-56 223.0 246 48.0
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 2.5e-56 223.0 246 49.6
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 4.2e-56 222.2 246 47.6
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 5.5e-56 221.9 246 46.7
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 7.2e-56 221.5 245 48.6
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 7.2e-56 221.5 236 47.5
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 1.6e-55 220.3 247 47.4
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 3.6e-55 219.2 246 49.2
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 6.1e-55 218.4 247 48.6
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 8.0e-55 218.0 245 49.4
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.4e-54 217.2 246 49.2
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 1.8e-54 216.9 246 47.2
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 2.3e-54 216.5 246 48.4
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 2.3e-54 216.5 246 48.8
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 3.0e-54 216.1 246 47.2
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 5.2e-54 215.3 248 46.4
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 1.5e-53 213.8 245 45.7
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 2.0e-53 213.4 245 46.1
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 2.6e-53 213.0 246 48.8
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 5.7e-53 211.8 220 48.6
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 1.7e-52 210.3 250 46.0
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 2.8e-52 209.5 250 45.6
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 4.9e-52 208.8 248 46.0
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 6.3e-52 208.4 248 47.2
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 3.1e-51 206.1 246 43.5
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 4.1e-51 205.7 246 42.7
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 1.6e-50 203.8 246 41.9
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 2.7e-50 203.0 191 54.5
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 2.7e-50 203.0 246 46.3
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 3.5e-50 202.6 250 42.4
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 4.5e-50 202.2 248 43.5
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 4.5e-50 202.2 246 43.1
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 1.7e-49 200.3 246 42.3
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 1.7e-49 200.3 246 42.3
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 1.1e-48 197.6 246 40.7
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 2.5e-48 196.4 246 42.3
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 4.3e-48 195.7 246 42.7
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 4.3e-48 195.7 246 42.7
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 4.3e-48 195.7 246 42.7
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 5.6e-48 195.3 231 47.2
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 6.1e-47 191.8 269 40.9
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 8.0e-47 191.4 249 41.4
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 1.4e-46 190.7 246 43.9
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 3.0e-46 189.5 199 49.7
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 1.2e-45 187.6 191 51.8
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 2.6e-45 186.4 246 42.3
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 3.4e-45 186.0 295 38.6
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 8.3e-44 181.4 168 51.8
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 4.6e-42 175.6 245 42.4
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 7.8e-42 174.9 247 40.5
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 1.0e-41 174.5 246 43.1
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 1.3e-41 174.1 199 46.2
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 1.6e-39 167.2 175 50.3
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 1.6e-39 167.2 249 39.8
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 1.8e-38 163.7 175 46.3
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 4.9e-36 155.6 258 38.8
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 9.2e-35 151.4 251 36.7
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 1.7e-33 147.1 251 35.5
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 3.0e-33 146.4 203 39.4
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 3.9e-33 146.0 213 40.4
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 5.0e-33 145.6 243 34.2
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.1e-32 144.4 246 37.8
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.9e-32 143.7 238 36.6
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 3.3e-32 142.9 238 36.6
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 4.3e-32 142.5 238 36.1
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 5.6e-32 142.1 251 35.1
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 2.1e-31 140.2 245 34.3
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 4.4e-29 132.5 239 34.7
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 2.3e-25 120.2 175 37.7
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 2.5e-24 116.7 164 36.0
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 9.5e-24 114.8 250 32.8
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 6.0e-18 95.5 95 58.9
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 1.6e-10 70.9 80 46.2
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 8.7e-09 65.1 74 51.4
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 1.6e-07 60.8 70 47.1
Lsat_1_v5_gn_3_93600 Lactuca sativa HOM05D007471 ORTHO05D233800 3.1e-06 56.6 96 36.5
Peaxi162Scf00289g00039 Petunia axillaris HOM05D007471 ORTHO05D009481 6.9e-06 55.5 57 42.1
MBI14_g37361_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 9.0e-06 55.1 46 47.8


User provided reference genes

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