Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 5.0e-165 584.3 286 100.0
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.0e-69 267.7 219 69.9
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.8e-56 222.6 217 56.2
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.1e-55 221.1 203 60.1
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.1e-55 221.1 217 55.8
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-55 221.1 217 55.8
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.1e-55 221.1 217 56.2
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-55 220.3 217 55.8
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-55 220.3 217 55.8
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 1.9e-55 220.3 218 56.0
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 3.2e-55 219.5 219 55.7
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 7.2e-55 218.4 217 55.8
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.2e-54 217.6 213 55.9
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.6e-54 217.2 217 55.8
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 2.7e-54 216.5 203 59.6
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 4.6e-54 215.7 216 56.9
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 6.1e-54 215.3 218 56.0
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 7.9e-54 214.9 217 55.8
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.0e-53 214.5 217 54.8
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 1.3e-53 214.2 217 54.4
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.8e-53 213.8 224 54.5
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 3.0e-53 213.0 203 58.1
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 3.9e-53 212.6 218 54.6
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.7e-53 211.8 222 54.5
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.7e-53 211.8 222 54.5
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 8.7e-53 211.5 221 54.8
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 8.7e-53 211.5 214 54.7
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.1e-52 211.1 245 52.2
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.1e-52 211.1 206 58.3
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.5e-52 210.7 218 55.5
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 2.2e-51 206.8 202 58.9
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 2.8e-51 206.5 207 56.0
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 3.7e-51 206.1 206 55.3
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 8.2e-51 204.9 205 58.0
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 8.2e-51 204.9 206 56.3
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.4e-50 204.1 205 57.6
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.4e-50 203.4 204 58.8
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 3.1e-50 203.0 213 54.9
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 3.1e-50 203.0 204 58.3
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 3.1e-50 203.0 206 55.8
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 5.3e-50 202.2 204 56.4
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 5.3e-50 202.2 203 55.7
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 6.9e-50 201.8 203 56.7
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 6.9e-50 201.8 204 55.4
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 9.0e-50 201.4 203 55.7
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.2e-49 201.1 203 55.2
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.2e-49 201.1 217 52.5
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 2.0e-49 200.3 209 54.5
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 2.0e-49 200.3 203 55.2
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 3.4e-49 199.5 207 56.0
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 3.4e-49 199.5 224 50.9
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 4.5e-49 199.1 227 50.2
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 5.9e-49 198.7 203 54.2
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.9e-49 198.7 217 52.1
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.9e-49 198.7 217 52.1
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.0e-48 198.0 221 52.9
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 2.2e-48 196.8 193 57.5
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 2.2e-48 196.8 193 57.5
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.2e-48 196.8 207 54.1
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.9e-48 196.4 203 56.2
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 3.8e-48 196.1 203 54.7
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 6.5e-48 195.3 192 55.7
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.1e-47 194.5 203 54.2
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 4.2e-47 192.6 222 50.9
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 5.5e-47 192.2 205 53.2
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 9.4e-47 191.4 208 54.3
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 9.4e-47 191.4 192 55.7
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.7e-46 189.9 203 53.2
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 3.6e-46 189.5 203 53.2
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 3.6e-46 189.5 204 53.9
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 6.1e-46 188.7 214 53.7
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 7.9e-46 188.3 203 52.2
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.0e-45 188.0 192 54.2
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.4e-45 187.6 205 53.7
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.8e-45 187.2 194 55.7
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.8e-45 187.2 215 50.2
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 2.3e-45 186.8 189 56.1
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.3e-45 186.8 203 51.2
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 3.9e-45 186.0 192 54.2
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 8.8e-45 184.9 196 53.1
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 3.3e-44 183.0 220 47.7
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.3e-43 181.0 205 51.7
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.7e-43 180.6 204 51.0
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.2e-43 180.3 204 51.5
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.3e-43 178.7 224 49.1
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.4e-42 177.6 194 51.0
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 3.1e-42 176.4 203 49.8
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.5e-41 174.1 209 51.7
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.4e-41 172.9 214 46.3
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 1.0e-40 171.4 223 46.2
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 2.2e-40 170.2 195 50.3
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 2.2e-40 170.2 188 48.9
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.9e-40 169.9 205 50.7
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.9e-40 169.9 201 48.8
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 5.0e-40 169.1 214 47.2
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 8.5e-40 168.3 195 49.7
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.1e-39 167.9 188 51.6
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.2e-39 166.0 215 47.4
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 9.4e-39 164.9 193 47.2
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 7.9e-38 161.8 189 49.2
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 7.9e-38 161.8 189 49.2
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 3.9e-37 159.5 218 45.4
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 6.7e-37 158.7 196 48.0
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 8.8e-37 158.3 206 46.6
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 1.5e-36 157.5 217 45.2
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 1.5e-36 157.5 217 45.2
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.5e-36 157.5 216 45.4
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 3.3e-36 156.4 209 45.0
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 4.4e-36 156.0 196 48.0
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 5.7e-36 155.6 205 44.4
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 5.7e-36 155.6 196 47.4
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 7.4e-36 155.2 133 62.4
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 9.7e-36 154.8 191 46.1
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.3e-35 154.5 217 44.7
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 2.2e-35 153.7 218 44.5
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.2e-35 153.7 222 44.6
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 2.2e-35 153.7 218 44.5
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 2.2e-35 153.7 218 44.5
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.8e-35 153.3 217 43.8
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 3.7e-35 152.9 217 43.8
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 4.8e-35 152.5 219 44.3
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 4.8e-35 152.5 241 40.7
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 6.3e-35 152.1 217 43.8
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 6.3e-35 152.1 218 44.0
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.8e-34 150.6 196 48.0
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.9e-32 143.3 104 68.3
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.5e-31 141.0 174 48.9
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 2.5e-31 140.2 216 43.5
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 6.1e-30 135.6 200 46.0
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 6.7e-29 132.1 216 39.8
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 6.3e-27 125.6 95 63.2
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.4e-26 124.4 85 70.6
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.8e-26 124.0 101 57.4
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 9.1e-26 121.7 197 36.0
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.2e-25 121.3 85 70.6
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 2.1e-22 110.5 167 42.5
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 6.8e-21 105.5 149 45.6
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 9.8e-20 101.7 174 40.8
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 4.0e-13 79.7 57 68.4
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.1e-07 61.6 164 31.1


User provided reference genes

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