Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.9e-78 295.8 152 100.0
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 1.5e-35 153.3 197 46.2
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 4.8e-34 148.3 196 43.9
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 4.1e-33 145.2 150 48.7
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 7.0e-33 144.4 196 42.9
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 9.1e-33 144.1 150 49.3
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.2e-32 143.7 148 48.6
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.1e-30 137.1 198 39.4
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.5e-30 136.7 197 39.1
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 7.2e-30 134.4 189 40.7
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 9.4e-30 134.0 200 41.5
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 1.2e-29 133.7 199 39.7
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 2.7e-29 132.5 199 39.2
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 4.7e-29 131.7 195 40.0
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.7e-29 131.7 199 38.7
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.7e-29 131.7 199 38.7
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 8.0e-29 131.0 191 39.8
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 6.8e-28 127.9 195 40.0
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 6.8e-28 127.9 164 45.1
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 8.8e-28 127.5 94 67.0
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 1.2e-27 127.1 191 38.7
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.0e-27 126.3 197 36.0
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 4.4e-27 125.2 198 38.4
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 4.4e-27 125.2 195 35.9
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 5.7e-27 124.8 175 37.7
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 5.7e-27 124.8 183 37.7
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 7.5e-27 124.4 199 37.7
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 1.3e-26 123.6 195 35.9
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.3e-26 123.6 193 38.9
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 1.7e-26 123.2 174 37.4
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 2.8e-26 122.5 100 59.0
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 8.3e-26 120.9 137 50.4
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 1.4e-25 120.2 186 38.7
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 3.1e-25 119.0 175 36.6
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 3.1e-25 119.0 175 36.6
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 3.1e-25 119.0 195 34.4
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 5.4e-25 118.2 171 36.8
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 5.4e-25 118.2 193 35.2
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.2e-24 117.1 187 34.8
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 1.2e-24 117.1 97 57.7
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 1.2e-24 117.1 191 37.2
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 2.0e-24 116.3 199 39.2
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.5e-24 115.5 195 33.3
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 3.5e-24 115.5 188 35.6
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 4.5e-24 115.2 174 38.5
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 4.5e-24 115.2 94 63.8
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.3e-23 113.6 200 37.5
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.3e-23 113.6 200 36.0
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 1.7e-23 113.2 182 35.7
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.2e-23 112.8 201 35.3
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.9e-23 112.5 201 35.3
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.9e-23 112.5 201 35.3
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 5.0e-23 111.7 194 34.0
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 8.5e-23 110.9 134 47.8
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 8.5e-23 110.9 176 39.8
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 1.1e-22 110.5 194 37.1
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.5e-22 110.2 195 32.8
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.5e-22 109.4 198 33.8
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 2.5e-22 109.4 149 43.6
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 2.5e-22 109.4 199 37.2
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 9.5e-22 107.5 131 47.3
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.6e-21 106.7 195 32.3
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.1e-21 106.3 97 51.5
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 2.1e-21 106.3 101 52.5
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 2.8e-21 105.9 101 51.5
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 1.4e-20 103.6 194 33.0
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.8e-20 103.2 196 31.6
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 5.2e-20 101.7 86 55.8
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 6.8e-20 101.3 97 55.7
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 8.8e-20 100.9 98 50.0
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 1.2e-19 100.5 58 79.3
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 7.5e-19 97.8 74 67.6
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 1.3e-18 97.1 153 38.6
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 1.3e-18 97.1 86 51.2
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 2.2e-18 96.3 90 48.9
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 3.7e-18 95.5 98 44.9
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 4.9e-18 95.1 60 75.0
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 4.1e-17 92.0 92 44.6
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 5.4e-17 91.7 68 64.7
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 1.0e-15 87.4 59 69.5
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 5.0e-15 85.1 270 28.9
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 6.6e-15 84.7 82 48.8
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 6.6e-15 84.7 126 40.5
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 8.6e-15 84.3 58 67.2
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.1e-14 84.0 162 37.0
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 2.5e-14 82.8 82 47.6
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 2.5e-14 82.8 60 63.3
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 2.5e-14 82.8 96 38.5
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 5.6e-14 81.6 96 43.8
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 7.3e-14 81.3 60 66.7
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 7.3e-14 81.3 72 56.9
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 8.0e-13 77.8 61 54.1
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 8.0e-13 77.8 66 57.6
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 1.0e-12 77.4 62 56.5
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 1.8e-12 76.6 53 66.0
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 1.8e-12 76.6 53 66.0
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 6.8e-12 74.7 170 33.5
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 8.9e-12 74.3 84 39.3
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 2.9e-10 69.3 97 35.1
SMO364G0587 Selaginella moellendorffii HOM05D004264 ORTHO05D004680 1.2e-08 63.9 118 31.4
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 1.6e-08 63.5 58 55.2
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 2.3e-07 59.7 89 37.1
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 2.3e-07 59.7 89 37.1
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 2.3e-07 59.7 63 42.9
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 2.3e-07 59.7 67 46.3
A03p65190 Brassica napus HOM05D024600 ORTHO05D004680 5.6e-06 55.1 58 51.7


User provided reference genes

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