Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1801.9 922 100.0
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1298.1 918 71.5
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1294.6 911 72.3
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1288.1 915 70.8
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1286.9 921 71.4
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1281.9 915 71.0
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1279.6 860 75.3
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1278.1 924 71.1
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1270.8 923 69.6
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1268.8 924 69.4
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1267.7 917 70.1
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1267.3 924 69.7
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1259.6 918 69.3
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1259.2 997 65.9
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1258.4 918 70.0
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1256.9 923 69.2
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1255.7 964 67.3
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1245.7 922 69.3
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1245.3 923 68.9
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1240.3 920 67.8
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1239.6 923 67.6
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1239.2 923 68.4
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1235.3 920 67.9
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1231.5 869 72.0
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1229.5 920 67.5
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1224.9 937 66.8
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1224.5 923 67.8
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1221.1 926 67.2
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1215.7 913 67.4
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1205.7 937 66.7
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1191.8 919 66.1
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1191.0 919 66.9
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1187.6 931 65.7
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1183.7 919 66.2
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1181.8 916 66.2
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1181.8 938 65.4
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1170.6 958 63.2
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1169.5 926 65.9
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1169.1 930 65.5
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1168.3 873 68.0
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1168.3 919 65.0
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1165.2 909 66.3
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1162.5 874 68.1
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1159.1 921 64.8
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1157.5 909 65.9
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1156.4 1087 57.5
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1156.0 1080 58.8
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1155.6 911 65.6
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 0.0e+00 1155.6 988 61.8
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1154.8 924 64.5
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1154.4 910 66.0
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 0.0e+00 1153.7 871 69.2
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1152.9 938 63.6
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1152.9 919 65.1
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1142.9 932 64.4
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1135.9 930 64.4
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 0.0e+00 1112.1 1146 54.8
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1109.7 921 61.7
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1107.0 922 61.1
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1103.6 920 60.8
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1102.8 914 61.6
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1101.7 931 60.7
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1100.9 916 62.2
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1097.4 920 61.4
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 0.0e+00 1095.9 913 64.0
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1094.0 927 60.2
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1091.3 922 60.7
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1086.6 924 60.9
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 0.0e+00 1081.2 914 64.0
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 1.3e-311 1072.8 921 59.9
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 9.5e-311 1070.1 917 60.5
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 6.9e-309 1063.9 772 69.8
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 9.0e-309 1063.5 924 61.0
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 4.2e-306 1054.7 921 60.6
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 2.1e-305 1052.4 921 59.9
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.0e-304 1050.0 921 59.2
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 6.9e-301 1037.3 949 57.6
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 1.6e-297 1026.2 931 60.3
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.5e-292 1009.6 924 57.6
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 7.7e-292 1007.3 759 67.3
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 1.2e-289 1000.0 955 56.5
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 3.6e-289 998.4 718 73.4
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 4.6e-289 998.0 1015 54.6
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 1.4e-288 996.5 922 57.0
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.8e-288 996.1 860 59.9
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 7.4e-287 990.7 937 56.7
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.9e-282 976.1 726 67.9
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.8e-277 959.5 915 55.6
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 1.2e-276 956.8 773 64.7
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 3.9e-272 941.8 931 55.4
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 9.4e-258 894.0 730 64.7
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 4.7e-257 891.7 918 53.1
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 8.3e-254 880.9 641 70.4
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 1.3e-246 857.1 641 66.9
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 1.2e-236 823.9 599 68.4
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 2.7e-204 716.5 530 71.7
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 2.2e-198 696.8 569 62.9
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 2.3e-195 686.8 571 60.6
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 2.3e-179 633.6 487 66.3
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 3.9e-171 606.3 928 41.2
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 9.7e-162 575.1 424 69.1
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 1.8e-160 570.9 411 68.1
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.0e-159 567.4 549 56.3
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 3.0e-155 553.5 912 40.1
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 5.7e-154 549.3 440 64.1
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 8.2e-153 545.4 473 63.0
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.3e-150 538.1 917 38.4
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 2.1e-140 504.2 899 36.8
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 2.2e-137 494.2 605 47.3
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 1.2e-135 488.4 919 36.2
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 6.1e-132 476.1 633 43.8
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 3.3e-117 427.2 297 72.7
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 8.9e-107 392.5 349 57.0
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 5.6e-101 373.2 687 38.0
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 6.8e-99 366.3 567 40.4
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 2.5e-93 347.8 228 77.6
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 3.1e-91 340.9 241 73.0
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 3.8e-89 334.0 277 61.7
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 1.6e-76 292.0 293 57.7
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 7.9e-71 273.1 601 34.9
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 2.4e-67 261.5 221 63.3
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 5.1e-62 243.8 151 76.8
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 3.9e-54 217.6 259 46.3
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 5.3e-51 207.2 152 67.1
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 7.9e-47 193.4 129 76.0
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 4.5e-34 151.0 101 72.3
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.0e-33 147.5 165 48.5
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 1.0e-30 139.8 234 36.8
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 1.2e-29 136.3 117 54.7
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 1.5e-29 136.0 157 45.2
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.5e-24 119.4 75 72.0
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.6e-23 115.9 132 44.7
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.1e-23 115.5 145 51.7
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 8.0e-23 113.6 195 39.0
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.5e-21 109.4 120 50.0
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 2.7e-18 98.6 65 70.8
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.9e-18 97.4 95 58.9
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 2.9e-17 95.1 58 70.7
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 5.0e-17 94.4 84 64.3
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 6.6e-17 94.0 93 59.1
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 1.8e-14 85.9 978 19.9
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 4.4e-13 81.3 991 20.4
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 2.2e-12 79.0 130 41.5
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 2.9e-12 78.6 143 32.2
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 1.8e-11 75.9 130 40.0
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 3.5e-10 71.6 66 60.6
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 1.9e-08 65.9 238 26.1
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 3.3e-08 65.1 69 44.9
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.8e-07 62.0 82 42.7


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