Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g01310 Coffea canephora HOM05D000236 ORTHO05D000192 9.9e-46 186.4 94 100.0
Cc08_g02560 Coffea canephora HOM05D000236 ORTHO05D000192 1.4e-36 156.0 97 82.5
Dinv25206 Davidia involucrata HOM05D000236 ORTHO05D000192 1.1e-20 103.2 100 62.0
Dinv28945 Davidia involucrata HOM05D000236 ORTHO05D000192 5.5e-20 100.9 99 62.6
CAN.G201.24 Capsicum annuum HOM05D000236 ORTHO05D000192 2.5e-17 92.0 101 54.5
Nitab4.5_0000256g0410 Nicotiana tabacum HOM05D000236 ORTHO05D000192 1.1e-15 86.7 100 51.0
GSVIVG01013200001 Vitis vinifera HOM05D000236 ORTHO05D000192 1.4e-15 86.3 103 55.3
Actinidia09215 Actinidia chinensis HOM05D000236 ORTHO05D000192 1.8e-15 85.9 92 57.6
Nitab4.5_0004865g0020 Nicotiana tabacum HOM05D000236 ORTHO05D000192 1.8e-15 85.9 94 54.3
Nitab4.5_0013102g0010 Nicotiana tabacum HOM05D000236 ORTHO05D000192 1.2e-14 83.2 93 53.8
MSTRG.12155 Avicennia marina HOM05D000236 ORTHO05D000192 1.5e-14 82.8 100 52.0
HanXRQChr17g0535921 Helianthus annuus HOM05D000236 ORTHO05D000192 4.5e-14 81.3 128 45.3
Oeu001182.1 Olea europaea HOM05D000236 ORTHO05D000192 5.9e-14 80.9 98 50.0
Peaxi162Scf00615g00523 Petunia axillaris HOM05D000236 ORTHO05D000192 1.0e-13 80.1 99 51.5
Solyc08g077030.4 Solanum lycopersicum HOM05D000236 ORTHO05D000192 1.0e-13 80.1 94 54.3
Sopen08g025610 Solanum pennellii HOM05D000236 ORTHO05D000192 1.0e-13 80.1 94 54.3
Actinidia14813 Actinidia chinensis HOM05D000740 ORTHO05D005071 2.2e-13 79.0 92 53.3
Ciclev10031852m.g Citrus clementina HOM05D000236 ORTHO05D000192 6.5e-13 77.4 99 53.5
Oeu005303.1 Olea europaea HOM05D000236 ORTHO05D000192 1.4e-12 76.3 99 51.5
CSS0017050 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 1.9e-12 75.9 93 52.7
CSS0024158 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 1.9e-12 75.9 93 52.7
Haze_08247 Corylus avellana HOM05D000236 ORTHO05D000192 4.2e-12 74.7 92 52.2
Lj2A241G25 Lonicera japonica HOM05D000236 ORTHO05D000192 7.2e-12 73.9 104 47.1
Cfa012423 Carpinus fangiana HOM05D000236 ORTHO05D000192 1.2e-11 73.2 92 51.1
CiPaw.12G062800 Carya illinoinensis HOM05D000236 ORTHO05D000192 2.7e-11 72.0 98 50.0
Nn1g00541 Nelumbo nucifera HOM05D000236 ORTHO05D000192 3.6e-11 71.6 94 47.9
Rhsim07G0126300 Rhododendron simsii HOM05D000236 ORTHO05D000192 4.6e-11 71.2 97 52.6
Hma1.2p1_0991F.1_g245060 Hydrangea macrophylla HOM05D000236 ORTHO05D000192 1.0e-10 70.1 95 51.6
MSTRG.13758 Avicennia marina HOM05D000236 ORTHO05D000192 2.3e-10 68.9 92 45.7
Nitab4.5_0000804g0090 Nicotiana tabacum HOM05D000236 ORTHO05D000192 6.7e-10 67.4 74 56.8
Peaxi162Scf00102g00521 Petunia axillaris HOM05D000236 ORTHO05D000192 6.7e-10 67.4 96 50.0
Cpa.g.sc319.3 Carica papaya HOM05D000236 ORTHO05D000192 8.8e-10 67.0 88 51.1
Gohir.D12G211600 Gossypium hirsutum HOM05D000236 ORTHO05D000192 8.8e-10 67.0 98 48.0
Gorai.008G227100 Gossypium raimondii HOM05D000236 ORTHO05D000192 1.5e-09 66.2 98 48.0
Gohir.A12G208900 Gossypium hirsutum HOM05D000236 ORTHO05D000192 2.0e-09 65.9 98 46.9
Hund14404 Selenicereus undatus HOM05D000236 ORTHO05D000192 9.7e-09 63.5 102 46.1
Duzib084G0714 Durio zibethinus HOM05D000236 ORTHO05D000192 1.3e-08 63.2 98 45.9
EL10Ac5g12137 Beta vulgaris HOM05D000236 ORTHO05D000192 2.8e-08 62.0 101 43.6
vmacro14168 Vaccinium macrocarpon HOM05D000236 ORTHO05D000192 2.8e-08 62.0 78 52.6
CAN.G1659.9 Capsicum annuum HOM05D000236 ORTHO05D000192 3.7e-08 61.6 100 49.0
Prupe.5G037000 Prunus persica HOM05D000236 ORTHO05D000192 3.7e-08 61.6 89 49.4
Hund14403 Selenicereus undatus HOM05D000236 ORTHO05D000192 4.8e-08 61.2 102 45.1
TAR375G0829 Trochodendron aralioides HOM05D000236 ORTHO05D000192 6.3e-08 60.8 114 43.0
AUR62018725 Chenopodium quinoa HOM05D000236 ORTHO05D000192 8.2e-08 60.5 102 45.1
Nitab4.5_0008650g0010 Nicotiana tabacum HOM05D000236 ORTHO05D000192 8.2e-08 60.5 71 52.1
Duzib205G1060 Durio zibethinus HOM05D000236 ORTHO05D000192 1.1e-07 60.1 98 44.9
SalBow6G5060 Salvia bowleyana HOM05D000236 ORTHO05D000192 1.1e-07 60.1 101 44.6
Ah.12g054940 Amaranthus hybridus HOM05D000236 ORTHO05D000192 1.4e-07 59.7 96 41.7
CANSAT21G1281 Cannabis sativa HOM05D000236 ORTHO05D000192 1.4e-07 59.7 100 41.0
Lj2g0016499 Lotus japonicus HOM05D000236 ORTHO05D000192 1.4e-07 59.7 98 44.9
TWI15G1091 Tripterygium wilfordii HOM05D000236 ORTHO05D000192 1.4e-07 59.7 97 44.3
TWI60G0686 Tripterygium wilfordii HOM05D000236 ORTHO05D000192 1.4e-07 59.7 99 43.4
CiPaw.12G062600 Carya illinoinensis HOM05D000236 ORTHO05D000192 1.8e-07 59.3 99 45.5
PSO717G0107 Papaver somniferum HOM05D000236 ORTHO05D000192 1.8e-07 59.3 101 40.6
Peaxi162Scf00460g00511 Petunia axillaris HOM05D000236 ORTHO05D000192 2.4e-07 58.9 94 44.7
Aqoxy6G02986 Aquilegia oxysepala HOM05D000236 ORTHO05D000192 5.3e-07 57.8 83 49.4
DCAR_024968 Daucus carota HOM05D000236 ORTHO05D000192 5.3e-07 57.8 84 51.2
PSO675G9086 Papaver somniferum HOM05D000236 ORTHO05D000192 6.9e-07 57.4 101 39.6
AUR62007279 Chenopodium quinoa HOM05D000236 ORTHO05D000192 9.1e-07 57.0 102 43.1
Sabra01G0111900 Salix brachista HOM05D000236 ORTHO05D000192 9.1e-07 57.0 89 43.8
MELO3C013856.2 Cucumis melo HOM05D000236 ORTHO05D000192 1.5e-06 56.2 91 45.1
CsaV3_3G001800 Cucumis sativus L. HOM05D000236 ORTHO05D000192 1.5e-06 56.2 91 45.1
Eucgr.E00286 Eucalyptus grandis HOM05D000236 ORTHO05D000192 2.0e-06 55.8 102 45.1
HanXRQChr06g0167411 Helianthus annuus HOM05D000236 ORTHO05D000192 2.6e-06 55.5 120 39.2
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 4.5e-06 54.7 76 52.6
Manes.17G011900 Manihot esculenta HOM05D000236 ORTHO05D000192 7.7e-06 53.9 91 46.2
TWI81G0162 Tripterygium wilfordii HOM05D000236 ORTHO05D000192 7.7e-06 53.9 91 44.0


User provided reference genes

Program Settings