Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 2.6e-83 312.0 159 100.0
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 1.8e-79 299.3 157 95.5
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.0e-66 256.9 150 85.3
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.7e-66 256.1 149 85.9
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.7e-66 256.1 149 85.9
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 8.5e-66 253.8 150 85.3
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 1.1e-65 253.4 150 86.0
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.9e-65 252.7 149 85.2
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.9e-65 252.7 157 81.5
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 9.4e-65 250.4 154 82.5
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 2.7e-64 248.8 146 85.6
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 4.7e-64 248.1 149 83.9
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 4.7e-64 248.1 150 85.3
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 8.0e-64 247.3 145 86.2
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 5.2e-63 244.6 154 81.2
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 8.8e-63 243.8 149 81.9
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 8.8e-63 243.8 148 85.1
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 8.8e-63 243.8 148 85.1
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.2e-62 243.4 149 82.6
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.2e-62 243.4 155 80.6
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.5e-62 243.0 146 84.9
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.5e-62 243.0 149 81.2
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.5e-62 243.0 150 82.7
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.5e-62 243.0 150 81.3
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 2.0e-62 242.7 150 79.3
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 2.6e-62 242.3 149 82.6
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 4.4e-62 241.5 149 82.6
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 4.4e-62 241.5 148 81.1
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 5.7e-62 241.1 151 81.5
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 5.7e-62 241.1 151 81.5
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 5.7e-62 241.1 149 80.5
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 9.8e-62 240.4 150 82.0
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.3e-61 240.0 150 80.7
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.7e-61 239.6 152 79.6
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 2.8e-61 238.8 149 78.5
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 2.8e-61 238.8 149 78.5
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 2.8e-61 238.8 150 79.3
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 3.7e-61 238.4 149 82.6
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 4.9e-61 238.0 150 78.0
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 6.3e-61 237.7 156 77.6
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 8.3e-61 237.3 149 80.5
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 8.3e-61 237.3 150 78.7
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 1.1e-60 236.9 149 77.9
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.4e-60 236.5 149 81.2
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 1.4e-60 236.5 149 76.5
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.4e-60 236.5 171 73.7
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.4e-60 236.5 150 76.7
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.4e-60 236.5 148 78.4
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.8e-60 236.1 148 81.1
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.4e-60 235.7 148 79.1
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.4e-60 235.7 148 79.1
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 3.1e-60 235.3 148 79.1
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 3.1e-60 235.3 150 79.3
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 3.1e-60 235.3 151 79.5
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 3.1e-60 235.3 146 82.2
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 3.1e-60 235.3 146 82.2
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 3.1e-60 235.3 150 82.0
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 5.4e-60 234.6 148 78.4
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 5.4e-60 234.6 150 78.7
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.0e-60 234.2 150 80.0
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 7.0e-60 234.2 149 77.2
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-59 233.4 157 80.3
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.2e-59 233.4 151 76.2
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.2e-59 233.4 151 76.2
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.2e-59 233.4 154 76.0
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.6e-59 233.0 166 72.9
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.7e-59 232.3 149 78.5
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 2.7e-59 232.3 148 78.4
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 5.9e-59 231.1 149 80.5
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 5.9e-59 231.1 148 78.4
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 5.9e-59 231.1 150 77.3
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 5.9e-59 231.1 145 79.3
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 7.7e-59 230.7 148 77.7
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 7.7e-59 230.7 149 78.5
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.0e-58 230.3 150 77.3
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.0e-58 230.3 148 78.4
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 2.9e-58 228.8 148 77.7
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 3.8e-58 228.4 149 77.2
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 5.0e-58 228.0 150 74.7
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 6.6e-58 227.6 150 78.7
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.1e-57 226.9 155 73.5
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.5e-57 226.5 148 74.3
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.5e-57 226.5 148 77.0
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 2.5e-57 225.7 142 81.7
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 4.2e-57 224.9 147 75.5
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 4.2e-57 224.9 153 74.5
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.2e-57 224.2 149 78.5
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 7.2e-57 224.2 147 75.5
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.2e-56 223.4 147 75.5
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 1.2e-56 223.4 148 74.3
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.6e-56 223.0 150 78.0
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.6e-56 223.0 146 76.0
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 2.1e-56 222.6 146 76.0
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 2.8e-56 222.2 146 76.0
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 3.6e-56 221.9 146 76.0
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 3.6e-56 221.9 146 76.0
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 4.7e-56 221.5 149 73.8
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 4.7e-56 221.5 150 76.7
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 6.1e-56 221.1 150 76.7
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 8.0e-56 220.7 143 76.9
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 1.4e-55 219.9 146 74.7
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.8e-55 219.5 146 75.3
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 6.8e-55 217.6 148 71.6
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.5e-54 216.5 148 72.3
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 1.5e-54 216.5 145 77.2
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 3.4e-54 215.3 140 80.7
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 3.4e-54 215.3 140 80.7
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 3.4e-54 215.3 140 80.7
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 5.7e-54 214.5 143 75.5
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 9.8e-54 213.8 145 75.9
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 2.2e-53 212.6 143 75.5
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.9e-53 212.2 149 73.2
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.9e-53 212.2 140 79.3
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.4e-52 209.9 146 73.3
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 1.4e-52 209.9 151 72.2
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 3.2e-52 208.8 124 83.9
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 5.4e-52 208.0 161 67.7
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.6e-51 206.5 149 66.4
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 7.8e-51 204.1 149 71.8
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 7.8e-51 204.1 150 68.7
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 7.8e-51 204.1 156 72.4
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 7.8e-51 204.1 156 72.4
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 7.8e-51 204.1 156 69.2
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.7e-50 203.0 149 67.8
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 3.9e-50 201.8 149 67.1
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 5.0e-50 201.4 149 69.1
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 5.6e-49 198.0 149 69.8
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 9.5e-49 197.2 156 70.5
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.6e-48 196.4 126 78.6
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.6e-48 196.4 147 68.0
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 2.1e-48 196.1 124 79.8
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.0e-47 193.7 124 78.2
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 6.8e-47 191.0 134 73.1
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-46 190.3 96 95.8
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.3e-45 186.8 123 78.9
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.7e-45 186.4 143 69.9
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 3.2e-44 182.2 151 61.6
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 4.1e-44 181.8 110 83.6
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 2.7e-43 179.1 149 59.7
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.7e-43 179.1 105 81.9
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 3.3e-41 172.2 146 61.6
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 3.3e-41 172.2 157 57.3
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 5.6e-41 171.4 106 82.1
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.8e-39 166.4 100 80.0
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 5.2e-39 164.9 171 57.9
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 5.8e-38 161.4 100 74.0
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 5.4e-36 154.8 101 73.3
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 3.5e-35 152.1 94 84.0
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 5.1e-34 148.3 83 86.7
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 5.6e-33 144.8 91 81.3
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 7.6e-30 134.4 81 80.2
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 8.4e-29 131.0 133 57.9
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 3.5e-27 125.6 66 92.4
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 2.3e-26 122.9 151 53.6
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 3.6e-24 115.5 63 90.5
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 2.4e-20 102.8 156 38.5
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 7.1e-20 101.3 97 53.6
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 1.3e-16 90.5 165 33.3
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 3.2e-12 75.9 77 55.8
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 9.3e-12 74.3 88 50.0
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.1e-09 67.4 49 67.3
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.9e-09 66.6 158 30.4
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 1.5e-06 57.0 71 46.5
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 9.9e-06 54.3 40 77.5


User provided reference genes

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