Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g00090 Coffea canephora HOM05D002385 ORTHO05D002245 1.0e-27 126.3 80 100.0
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 9.4e-13 76.6 80 58.8
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 6.1e-12 73.9 80 55.0
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 1.0e-11 73.2 80 57.5
Cc05_g00120 Coffea canephora HOM05D002385 ORTHO05D002245 1.8e-11 72.4 57 68.4
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 4.0e-11 71.2 80 60.0
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 6.7e-11 70.5 81 54.3
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 8.8e-11 70.1 80 52.5
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 7.5e-10 67.0 80 56.2
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 1.3e-09 66.2 81 61.7
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 1.7e-09 65.9 81 59.3
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.8e-09 65.1 76 55.3
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 2.8e-09 65.1 83 50.6
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 3.7e-09 64.7 81 56.8
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 3.7e-09 64.7 76 57.9
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 3.7e-09 64.7 76 57.9
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 4.8e-09 64.3 47 76.6
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 6.3e-09 63.9 80 53.8
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 6.3e-09 63.9 80 48.8
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 8.2e-09 63.5 46 73.9
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 1.4e-08 62.8 88 46.6
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.4e-08 62.8 81 54.3
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 1.4e-08 62.8 80 53.8
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 1.8e-08 62.4 84 52.4
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 1.8e-08 62.4 84 52.4
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 1.8e-08 62.4 81 55.6
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.8e-08 62.4 81 54.3
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 1.8e-08 62.4 80 52.5
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.8e-08 62.4 76 52.6
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.8e-08 62.4 80 48.8
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.4e-08 62.0 47 74.5
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 3.1e-08 61.6 81 49.4
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 3.1e-08 61.6 76 51.3
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 7.0e-08 60.5 76 51.3
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 7.0e-08 60.5 76 55.3
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 7.0e-08 60.5 77 49.4
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 7.0e-08 60.5 76 51.3
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 7.0e-08 60.5 77 50.6
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 9.1e-08 60.1 81 50.6
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 1.2e-07 59.7 80 55.0
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 1.6e-07 59.3 45 68.9
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.0e-07 58.9 76 42.1
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.0e-07 58.9 71 49.3
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.0e-07 58.9 81 51.9
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.0e-07 58.9 81 51.9
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 2.0e-07 58.9 80 53.8
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 2.7e-07 58.5 70 52.9
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.7e-07 58.5 80 51.2
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 3.5e-07 58.2 46 71.7
Dinv05962 Davidia involucrata HOM05D014462 ORTHO05D018947 3.5e-07 58.2 100 37.0
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 3.5e-07 58.2 77 49.4
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 3.5e-07 58.2 77 48.1
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 3.5e-07 58.2 76 51.3
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 3.5e-07 58.2 80 51.2
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.5e-07 57.8 74 51.4
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 4.5e-07 57.8 81 55.6
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 5.9e-07 57.4 83 50.6
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 5.9e-07 57.4 77 48.1
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 5.9e-07 57.4 81 50.6
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 1.0e-06 56.6 77 45.5
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 1.0e-06 56.6 77 45.5
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 1.0e-06 56.6 81 48.1
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 1.0e-06 56.6 46 67.4
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 1.0e-06 56.6 79 60.8
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.2e-06 55.5 80 50.0
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 2.9e-06 55.1 82 48.8
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 2.9e-06 55.1 80 50.0
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 2.9e-06 55.1 46 65.2
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.9e-06 55.1 76 48.7
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.9e-06 55.1 76 48.7
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.8e-06 54.7 46 65.2
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 5.0e-06 54.3 46 71.7
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 5.0e-06 54.3 46 71.7
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 5.0e-06 54.3 88 39.8
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 5.0e-06 54.3 47 63.8
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 5.0e-06 54.3 78 43.6
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 5.0e-06 54.3 74 47.3
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 6.5e-06 53.9 64 43.8
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 6.5e-06 53.9 70 51.4
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 6.5e-06 53.9 76 48.7
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 6.5e-06 53.9 80 48.8
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 8.5e-06 53.5 46 65.2
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 8.5e-06 53.5 81 46.9
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 8.5e-06 53.5 81 56.8


User provided reference genes

Program Settings