Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g00040 Coffea canephora HOM05D007805 ORTHO05D009877 1.8e-28 128.6 69 100.0
Duzib133G0571 Durio zibethinus HOM05D007805 ORTHO05D009877 1.4e-20 102.4 68 80.9
Duzib138G1109 Durio zibethinus HOM05D007805 ORTHO05D009877 2.0e-19 98.6 68 77.9
Atru.chr8.992 Acer truncatum HOM05D007805 ORTHO05D009877 5.8e-19 97.1 68 76.5
Thecc.01G172700 Theobroma cacao HOM05D007805 ORTHO05D009877 7.6e-19 96.7 69 78.3
COL.COLO4_33759 Corchorus olitorius HOM05D007805 ORTHO05D009877 1.3e-18 95.9 68 75.0
Ciclev10013268m.g Citrus clementina HOM05D007805 ORTHO05D009877 1.7e-18 95.5 70 72.9
Cpa.g.sc8.292 Carica papaya HOM05D007805 ORTHO05D009877 2.2e-18 95.1 67 70.1
Sabra06G0014500 Salix brachista HOM05D007805 ORTHO05D009877 2.9e-18 94.7 67 79.1
Oeu003099.1 Olea europaea HOM05D007805 ORTHO05D009877 3.8e-18 94.4 69 72.5
CSS0006336 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 8.4e-18 93.2 72 73.6
CSS0028935 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 1.1e-17 92.8 72 72.2
Potri.006G021100 Populus trichocarpa HOM05D007805 ORTHO05D009877 1.1e-17 92.8 67 76.1
MSTRG.6601 Avicennia marina HOM05D007805 ORTHO05D009877 3.2e-17 91.3 70 68.6
Dinv24693 Davidia involucrata HOM05D007805 ORTHO05D009877 3.2e-17 91.3 69 72.5
Manes.08G069000 Manihot esculenta HOM05D007805 ORTHO05D009877 3.2e-17 91.3 67 71.6
TWI34G1833 Tripterygium wilfordii HOM05D007805 ORTHO05D009877 3.2e-17 91.3 68 72.1
SalBow7G2318 Salvia bowleyana HOM05D007805 ORTHO05D009877 5.4e-17 90.5 70 65.7
CSS0012461 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 1.6e-16 89.0 72 70.8
Gohir.A11G156100 Gossypium hirsutum HOM05D007805 ORTHO05D009877 3.5e-16 87.8 68 72.1
Cfa023524 Carpinus fangiana HOM05D007805 ORTHO05D009877 4.6e-16 87.4 67 67.2
QL04p061619 Quercus lobata HOM05D007805 ORTHO05D009877 4.6e-16 87.4 68 72.1
Sed0026541 Sechium edule HOM05D007805 ORTHO05D009877 4.6e-16 87.4 68 67.6
CiPaw.03G113200 Carya illinoinensis HOM05D007805 ORTHO05D009877 6.0e-16 87.0 68 73.5
ClCG07G010920 Citrullus lanatus HOM05D007805 ORTHO05D009877 6.0e-16 87.0 68 67.6
MELO3C016236.2 Cucumis melo HOM05D007805 ORTHO05D009877 6.0e-16 87.0 68 64.7
Gohir.D11G163200 Gossypium hirsutum HOM05D007805 ORTHO05D009877 6.0e-16 87.0 68 70.6
Gorai.007G173900 Gossypium raimondii HOM05D007805 ORTHO05D009877 6.0e-16 87.0 68 70.6
PSO541G3237 Papaver somniferum HOM05D007805 ORTHO05D009877 7.8e-16 86.7 64 67.2
PSO675G4353 Papaver somniferum HOM05D007805 ORTHO05D009877 7.8e-16 86.7 64 65.6
CsaV3_4G007340 Cucumis sativus L. HOM05D007805 ORTHO05D009877 1.0e-15 86.3 68 64.7
MBI02_g35828_MAGBIO Magnolia biondii HOM05D007805 ORTHO05D009877 1.0e-15 86.3 60 80.0
Haze_13640 Corylus avellana HOM05D007805 ORTHO05D009877 3.0e-15 84.7 67 67.2
HanXRQChr13g0396951 Helianthus annuus HOM05D007805 ORTHO05D009877 3.0e-15 84.7 67 67.2
PGR142G2087 Punica granatum HOM05D007805 ORTHO05D009877 3.0e-15 84.7 58 79.3
Migut.M00097 Erythranthe guttata HOM05D007805 ORTHO05D009877 3.9e-15 84.3 64 68.8
GSVIVG01015820001 Vitis vinifera HOM05D007805 ORTHO05D009877 5.1e-15 84.0 63 74.6
ECA233G5845 Erigeron canadensis HOM05D007805 ORTHO05D009877 6.6e-15 83.6 66 68.2
MD09G1139100 Malus domestica HOM05D007805 ORTHO05D009877 6.6e-15 83.6 69 66.7
Prupe.3G186600 Prunus persica HOM05D007805 ORTHO05D009877 6.6e-15 83.6 68 69.1
TAR624G1043 Trochodendron aralioides HOM05D007805 ORTHO05D009877 6.6e-15 83.6 59 74.6
Aa31LG8G8770 Aethionema arabicum HOM05D000023 ORTHO05D000014 8.7e-15 83.2 60 70.0
arahy.Tifrunner.gnm1.ann1.RTX0DF Arachis hypogaea HOM05D007805 ORTHO05D009877 8.7e-15 83.2 65 67.7
arahy.Tifrunner.gnm1.ann1.XU3UV1 Arachis hypogaea HOM05D007805 ORTHO05D009877 8.7e-15 83.2 65 67.7
Sopen12g002380 Solanum pennellii HOM05D007805 ORTHO05D009877 8.7e-15 83.2 66 68.2
PGSC0003DMG400024282 Solanum tuberosum HOM05D007805 ORTHO05D009877 8.7e-15 83.2 66 68.2
CDE02G0479 Ceratophyllum demersum HOM05D000623 ORTHO05D005779 1.1e-14 82.8 62 74.2
CANSAT64G2225 Cannabis sativa HOM05D007805 ORTHO05D009877 1.9e-14 82.0 68 63.2
THA.LOC104808521 Tarenaya hassleriana HOM05D007805 ORTHO05D009877 1.9e-14 82.0 65 63.1
Solyc12g006440.2 Solanum lycopersicum HOM05D007805 ORTHO05D009877 3.3e-14 81.3 65 67.7
Nitab4.5_0002015g0030 Nicotiana tabacum HOM05D007805 ORTHO05D009877 4.3e-14 80.9 66 68.2
AL3G36420 Arabidopsis lyrata HOM05D007805 ORTHO05D009877 5.6e-14 80.5 64 60.9
CARHR098100 Cardamine hirsuta HOM05D007805 ORTHO05D009877 5.6e-14 80.5 65 63.1
AT3G22210 Arabidopsis thaliana HOM05D007805 ORTHO05D009877 7.3e-14 80.1 64 60.9
Peaxi162Scf00047g02325 Petunia axillaris HOM05D007805 ORTHO05D009877 7.3e-14 80.1 66 65.2
Lj3g0006859 Lotus japonicus HOM05D007805 ORTHO05D009877 9.6e-14 79.7 68 64.7
Thhalv10021880m.g Eutrema salsugineum HOM05D007805 ORTHO05D009877 1.3e-13 79.3 66 63.6
Lsat_1_v5_gn_6_41501 Lactuca sativa HOM05D007805 ORTHO05D009877 1.3e-13 79.3 72 66.7
BcaB06g26324 Brassica carinata HOM05D007805 ORTHO05D009877 1.6e-13 79.0 66 63.6
BcaC05g28092 Brassica carinata HOM05D007805 ORTHO05D009877 2.1e-13 78.6 66 63.6
A05p26590 Brassica napus HOM05D007805 ORTHO05D009877 2.1e-13 78.6 66 63.6
C05p41160 Brassica napus HOM05D007805 ORTHO05D009877 2.1e-13 78.6 66 63.6
BolC5t32859H Brassica oleracea HOM05D007805 ORTHO05D009877 2.1e-13 78.6 66 63.6
BraA05t21534Z Brassica rapa HOM05D007805 ORTHO05D009877 2.1e-13 78.6 66 63.6
FAN02G2902 Fragaria x ananassa HOM05D007805 ORTHO05D009877 2.1e-13 78.6 68 64.7
FAN09G3597 Fragaria x ananassa HOM05D007805 ORTHO05D009877 2.1e-13 78.6 68 64.7
RcHm_v2.0_Chr2g0153601 Rosa chinensis HOM05D007805 ORTHO05D009877 2.1e-13 78.6 68 64.7
Carub.0003s2238 Capsella rubella HOM05D007805 ORTHO05D009877 4.8e-13 77.4 66 60.6
Sp3g20010 Schrenkiella parvula HOM05D007805 ORTHO05D009877 4.8e-13 77.4 66 62.1
FvH4_6g39540 Fragaria vesca HOM05D007805 ORTHO05D009877 6.2e-13 77.0 68 63.2
FAN14G4838 Fragaria x ananassa HOM05D007805 ORTHO05D009877 6.2e-13 77.0 68 63.2
Glyma.11G096300 Glycine max HOM05D007805 ORTHO05D009877 1.1e-12 76.3 68 64.7
Phvul.011G024400 Phaseolus vulgaris HOM05D007805 ORTHO05D009877 1.1e-12 76.3 65 66.2
Glyma.12G022400 Glycine max HOM05D007805 ORTHO05D009877 3.1e-12 74.7 68 63.2
Medtr4g076090 Medicago truncatula HOM05D007805 ORTHO05D009877 5.3e-12 73.9 63 65.1
Rhsim12G0014500 Rhododendron simsii HOM05D007805 ORTHO05D009877 6.9e-12 73.6 65 61.5
AUR62017845 Chenopodium quinoa HOM05D007805 ORTHO05D009877 1.2e-11 72.8 67 64.2
TPR.G21248 Trifolium pratense HOM05D007805 ORTHO05D009877 9.9e-11 69.7 64 65.6
Psat7g179400 Pisum sativum HOM05D007805 ORTHO05D009877 9.3e-09 63.2 67 59.7
unitig_899.g15287 Utricularia gibba HOM05D007805 ORTHO05D009877 9.3e-09 63.2 65 53.8
Pp3c13_11150 Physcomitrium patens HOM05D007805 ORTHO05D009877 6.0e-08 60.5 67 52.2
Potri.016G018650 Populus trichocarpa HOM05D007805 ORTHO05D009877 1.0e-07 59.7 71 54.9
Hund18262 Selenicereus undatus HOM05D007805 ORTHO05D009877 1.8e-07 58.9 40 72.5
AagrBONN_evm.TU.Sc2ySwM_228.5835 Anthoceros agrestis HOM05D007805 ORTHO05D009877 8.7e-07 56.6 63 54.0
EL10Ac6g15349 Beta vulgaris HOM05D007805 ORTHO05D009877 3.3e-06 54.7 62 53.2
Os04g0657900 Oryza sativa ssp. japonica HOM05D007805 ORTHO05D009877 7.4e-06 53.5 74 47.3


User provided reference genes

Program Settings