Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g17040 Coffea canephora HOM05D008788 ORTHO05D017864 2.9e-163 578.6 306 100.0
Cc04_g17030 Coffea canephora HOM05D018109 ORTHO05D009440 2.6e-55 219.9 253 53.8
Cc04_g17020 Coffea canephora HOM05D018109 ORTHO05D017864 6.5e-22 109.0 317 33.1
Hma1.2p1_0104F.1_g050070 Hydrangea macrophylla HOM05D000036 ORTHO05D009440 3.4e-18 96.7 216 35.6
Hma1.2p1_0104F.1_g050076 Hydrangea macrophylla HOM05D000036 ORTHO05D009440 3.4e-18 96.7 216 35.6
Hma1.2p1_0735F.1_g210420 Hydrangea macrophylla HOM05D000281 ORTHO05D009440 7.5e-18 95.5 255 30.6
HanXRQChr05g0158071 Helianthus annuus HOM05D000036 ORTHO05D009440 8.3e-17 92.0 196 32.1
Oeu006493.1 Olea europaea HOM05D000281 ORTHO05D009440 7.0e-16 89.0 194 33.5
Lsat_1_v5_gn_5_18821 Lactuca sativa HOM05D000036 ORTHO05D009440 3.5e-15 86.7 241 29.5
Solyc03g112960.1 Solanum lycopersicum HOM05D008788 ORTHO05D012497 7.7e-15 85.5 312 31.7
Potri.001G108200 Populus trichocarpa HOM05D000281 ORTHO05D009440 1.3e-14 84.7 231 31.6
Sabra01G0081700 Salix brachista HOM05D000281 ORTHO05D009440 1.3e-14 84.7 233 30.5
Dinv19941 Davidia involucrata HOM05D000036 ORTHO05D009440 3.8e-14 83.2 166 35.5
Sabra03G0087100 Salix brachista HOM05D000281 ORTHO05D009440 3.8e-14 83.2 227 29.5
Lj5C112G10 Lonicera japonica HOM05D000036 ORTHO05D009440 1.5e-13 81.3 160 33.1
Sc04g0002530 Simmondsia chinensis HOM05D000281 ORTHO05D009440 1.5e-13 81.3 253 31.2
Sopen03g032030 Solanum pennellii HOM05D008788 ORTHO05D012497 1.5e-13 81.3 311 29.6
THA.LOC104819444 Tarenaya hassleriana HOM05D000036 ORTHO05D009440 1.5e-13 81.3 269 26.8
CSS0042964 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D002265 1.9e-13 80.9 191 31.4
Migut.I00162 Erythranthe guttata HOM05D000281 ORTHO05D009440 1.9e-13 80.9 252 31.0
Peaxi162Scf00009g00113 Petunia axillaris HOM05D000281 ORTHO05D009440 1.9e-13 80.9 215 31.6
Atru.chr9.2281 Acer truncatum HOM05D000281 ORTHO05D009440 3.3e-13 80.1 193 32.1
Manes.14G076700 Manihot esculenta HOM05D000281 ORTHO05D009440 3.3e-13 80.1 272 29.4
Haze_07345 Corylus avellana HOM05D000281 ORTHO05D009440 5.5e-13 79.3 268 28.7
TAR624G0531 Trochodendron aralioides HOM05D000036 ORTHO05D002265 5.5e-13 79.3 210 26.2
COL.COLO4_30869 Corchorus olitorius HOM05D000036 ORTHO05D002265 7.2e-13 79.0 253 28.5
Cfa018963 Carpinus fangiana HOM05D000281 ORTHO05D009440 9.5e-13 78.6 249 29.3
COL.COLO4_30864 Corchorus olitorius HOM05D000036 ORTHO05D002265 9.5e-13 78.6 247 27.5
RcHm_v2.0_Chr2g0147861 Rosa chinensis HOM05D000036 ORTHO05D002265 1.2e-12 78.2 219 30.1
PGR083G0863 Punica granatum HOM05D000281 ORTHO05D009440 1.6e-12 77.8 198 26.8
Oeu060794.1 Olea europaea HOM05D018110 ORTHO05D017864 2.1e-12 77.4 236 30.1
PGSC0003DMG400018146 Solanum tuberosum HOM05D008788 ORTHO05D012497 2.1e-12 77.4 320 26.6
A05p17870 Brassica napus HOM05D000036 ORTHO05D002265 6.1e-12 75.9 208 29.3
BraA05t20677Z Brassica rapa HOM05D000036 ORTHO05D002265 6.1e-12 75.9 208 29.3
PGSC0003DMG400018145 Solanum tuberosum HOM05D000281 ORTHO05D009440 6.1e-12 75.9 195 28.7
FAN02G4144 Fragaria x ananassa HOM05D000036 ORTHO05D002265 8.0e-12 75.5 219 30.1
FAN05G2733 Fragaria x ananassa HOM05D000036 ORTHO05D002265 8.0e-12 75.5 219 30.1
Potri.003G123500 Populus trichocarpa HOM05D000281 ORTHO05D009440 1.0e-11 75.1 231 30.3
A03p38740 Brassica napus HOM05D000036 ORTHO05D002265 1.4e-11 74.7 220 25.9
BraA03t13022Z Brassica rapa HOM05D000036 ORTHO05D002265 1.4e-11 74.7 220 25.9
FvH4_5g15211 Fragaria vesca HOM05D000281 ORTHO05D009440 1.4e-11 74.7 256 26.6
Solyc03g112990.1 Solanum lycopersicum HOM05D000281 ORTHO05D009440 1.4e-11 74.7 191 29.3
BolC6t36710H Brassica oleracea HOM05D000036 ORTHO05D002265 1.8e-11 74.3 208 29.8
TAR626G1978 Trochodendron aralioides HOM05D000036 ORTHO05D002265 1.8e-11 74.3 232 26.3
Cfa003461 Carpinus fangiana HOM05D000036 ORTHO05D000095 2.3e-11 73.9 195 30.8
Haze_16136 Corylus avellana HOM05D000036 ORTHO05D002265 2.3e-11 73.9 195 30.3
Manes.11G012600 Manihot esculenta HOM05D000036 ORTHO05D002265 2.3e-11 73.9 250 27.2
BcaB04g18836 Brassica carinata HOM05D000036 ORTHO05D002265 3.0e-11 73.6 194 27.3
Cpa.g.sc17.229 Carica papaya HOM05D000281 ORTHO05D009440 3.0e-11 73.6 183 27.9
Nitab4.5_0000785g0060 Nicotiana tabacum HOM05D008788 ORTHO05D012497 5.2e-11 72.8 244 25.8
Glyma.07G045967 Glycine max HOM05D000036 ORTHO05D002265 6.8e-11 72.4 158 32.3
Nitab4.5_0000984g0100 Nicotiana tabacum HOM05D008788 ORTHO05D012497 6.8e-11 72.4 243 25.1
Sopen03g032050 Solanum pennellii HOM05D000281 ORTHO05D009440 6.8e-11 72.4 204 27.9
BcaC08g44138 Brassica carinata HOM05D000036 ORTHO05D002265 8.9e-11 72.0 208 29.8
C06p15380 Brassica napus HOM05D000036 ORTHO05D002265 8.9e-11 72.0 208 29.8
Prupe.3G031000 Prunus persica HOM05D000036 ORTHO05D000095 8.9e-11 72.0 216 30.6
Carub.0001s4312 Capsella rubella HOM05D000036 ORTHO05D002265 1.2e-10 71.6 191 27.7
Sc10g0008020 Simmondsia chinensis HOM05D000036 ORTHO05D002265 1.2e-10 71.6 250 27.6
BcaC01g03939 Brassica carinata HOM05D000036 ORTHO05D002265 1.5e-10 71.2 220 25.9
BolC3t16954H Brassica oleracea HOM05D000036 ORTHO05D002265 1.5e-10 71.2 220 25.9
Lj5C29T4 Lonicera japonica HOM05D000036 ORTHO05D002265 2.0e-10 70.9 209 27.3
Medtr8g023150 Medicago truncatula HOM05D000036 ORTHO05D002265 2.0e-10 70.9 194 29.4
Gohir.A05G141600 Gossypium hirsutum HOM05D000036 ORTHO05D002265 2.6e-10 70.5 194 28.9
QL10p016430 Quercus lobata HOM05D000281 ORTHO05D009440 2.6e-10 70.5 273 28.6
Duzib235G0550 Durio zibethinus HOM05D000036 ORTHO05D002265 3.4e-10 70.1 197 29.4
C03p46880 Brassica napus HOM05D000036 ORTHO05D002265 4.4e-10 69.7 221 26.2
CSS0007314 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D002265 4.4e-10 69.7 188 28.2
MELO3C001969.2 Cucumis melo HOM05D000281 ORTHO05D009440 4.4e-10 69.7 268 24.3
Lsat_1_v5_gn_5_137800 Lactuca sativa HOM05D000036 ORTHO05D002265 4.4e-10 69.7 264 26.1
FvH4_6g35820 Fragaria vesca HOM05D000036 ORTHO05D002265 5.7e-10 69.3 190 29.5
FAN09G4552 Fragaria x ananassa HOM05D000036 ORTHO05D002265 5.7e-10 69.3 190 29.5
FAN14G0632 Fragaria x ananassa HOM05D000036 ORTHO05D002265 5.7e-10 69.3 190 29.5
FAN14G2322 Fragaria x ananassa HOM05D000036 ORTHO05D002265 5.7e-10 69.3 190 29.5
Oeu053422.1 Olea europaea HOM05D000036 ORTHO05D002265 5.7e-10 69.3 210 26.2
Sabra03G0043500 Salix brachista HOM05D000036 ORTHO05D002265 5.7e-10 69.3 171 28.7
MBI13_g01661_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D002265 7.5e-10 68.9 191 29.3
TWI81G0565 Tripterygium wilfordii HOM05D000281 ORTHO05D009440 7.5e-10 68.9 261 23.4
ATR0099G099 Amborella trichopoda HOM05D000036 ORTHO05D002265 9.8e-10 68.6 173 27.2
BcaC08g43560 Brassica carinata HOM05D000036 ORTHO05D002265 9.8e-10 68.6 196 29.6
Lj1g0018042 Lotus japonicus HOM05D000281 ORTHO05D009440 1.3e-09 68.2 170 30.6
TWI59G0275 Tripterygium wilfordii HOM05D000036 ORTHO05D002265 1.3e-09 68.2 170 27.6
CiPaw.01G211500 Carya illinoinensis HOM05D000036 ORTHO05D002265 1.7e-09 67.8 199 27.1
Gohir.D05G143900 Gossypium hirsutum HOM05D000036 ORTHO05D002265 1.7e-09 67.8 194 28.4
Gorai.009G147800 Gossypium raimondii HOM05D000036 ORTHO05D002265 1.7e-09 67.8 194 28.4
TPR.G8720 Trifolium pratense HOM05D000036 ORTHO05D002265 1.7e-09 67.8 170 28.2
Gohir.D06G148700 Gossypium hirsutum HOM05D000036 ORTHO05D002265 2.2e-09 67.4 190 28.9
MD17G1154400 Malus domestica HOM05D000036 ORTHO05D002265 2.2e-09 67.4 253 28.5
Gorai.010G173200 Gossypium raimondii HOM05D000036 ORTHO05D002265 2.9e-09 67.0 174 29.9
Oeu060793.1 Olea europaea HOM05D018110 ORTHO05D017864 2.9e-09 67.0 205 29.3
Thhalv10011342m.g Eutrema salsugineum HOM05D000036 ORTHO05D002265 3.7e-09 66.6 164 31.1
Cpa.g.sc25.193 Carica papaya HOM05D000036 ORTHO05D002265 4.9e-09 66.2 220 29.5
ECA246G4295 Erigeron canadensis HOM05D000036 ORTHO05D009440 4.9e-09 66.2 214 23.8
PGR119G0854 Punica granatum HOM05D000036 ORTHO05D002265 4.9e-09 66.2 207 28.5
vmacro18768 Vaccinium macrocarpon HOM05D000036 ORTHO05D002265 4.9e-09 66.2 166 28.3
Phvul.010G123132 Phaseolus vulgaris HOM05D000036 ORTHO05D002265 6.3e-09 65.9 192 31.2
Thecc.06G130200 Theobroma cacao HOM05D000036 ORTHO05D002265 6.3e-09 65.9 166 29.5
Dinv25498 Davidia involucrata HOM05D000036 ORTHO05D002265 8.3e-09 65.5 243 26.7
MD09G1172900 Malus domestica HOM05D000036 ORTHO05D002265 8.3e-09 65.5 174 32.2
Psat4g165240 Pisum sativum HOM05D000036 ORTHO05D002265 8.3e-09 65.5 211 27.0
ECA234G1515 Erigeron canadensis HOM05D000036 ORTHO05D009440 1.1e-08 65.1 227 23.8
FAN02G2582 Fragaria x ananassa HOM05D000036 ORTHO05D000095 1.1e-08 65.1 222 29.3
Potri.003G072700 Populus trichocarpa HOM05D000036 ORTHO05D002265 1.1e-08 65.1 174 27.0
Sopen03g032040 Solanum pennellii HOM05D008788 ORTHO05D012497 1.1e-08 65.1 309 26.2
BraA06t23309Z Brassica rapa HOM05D000036 ORTHO05D002265 1.8e-08 64.3 194 29.4
Gohir.A06G143700 Gossypium hirsutum HOM05D000036 ORTHO05D002265 1.8e-08 64.3 174 29.3
Thhalv10010689m.g Eutrema salsugineum HOM05D000281 ORTHO05D009440 2.4e-08 63.9 265 27.2
Sp3g12590 Schrenkiella parvula HOM05D000036 ORTHO05D002265 2.4e-08 63.9 213 25.4
AL1G62550 Arabidopsis lyrata HOM05D000036 ORTHO05D002265 3.2e-08 63.5 152 29.6
CARHR089490 Cardamine hirsuta HOM05D000036 ORTHO05D002265 3.2e-08 63.5 193 24.9
Glyma.16G014000 Glycine max HOM05D000036 ORTHO05D002265 3.2e-08 63.5 179 29.6
Hma1.2p1_0090F.1_g045840 Hydrangea macrophylla HOM05D000036 ORTHO05D002265 3.2e-08 63.5 190 27.4
Potri.001G162700 Populus trichocarpa HOM05D000036 ORTHO05D002265 3.2e-08 63.5 174 26.4
PGR102G1887 Punica granatum HOM05D000036 ORTHO05D002265 3.2e-08 63.5 224 29.0
Solyc03g112970.1 Solanum lycopersicum HOM05D008788 ORTHO05D012497 3.2e-08 63.5 303 26.7
Aa31LG4G16400 Aethionema arabicum HOM05D000281 ORTHO05D009440 4.1e-08 63.2 266 27.1
BcaB02g10885 Brassica carinata HOM05D000036 ORTHO05D002265 4.1e-08 63.2 154 29.9
A06p00750 Brassica napus HOM05D000036 ORTHO05D002265 4.1e-08 63.2 193 28.5
Carub.0003s1400 Capsella rubella HOM05D000036 ORTHO05D002265 4.1e-08 63.2 177 28.8
CARHR044170 Cardamine hirsuta HOM05D000036 ORTHO05D002265 4.1e-08 63.2 145 30.3
Aqoxy7G04183 Aquilegia oxysepala HOM05D000036 ORTHO05D002265 5.4e-08 62.8 196 25.5
SalBow5G1583 Salvia bowleyana HOM05D008788 ORTHO05D009440 5.4e-08 62.8 139 33.1
THA.LOC104815596 Tarenaya hassleriana HOM05D000036 ORTHO05D002265 5.4e-08 62.8 197 26.9
COL.COLO4_21192 Corchorus olitorius HOM05D000036 ORTHO05D002265 7.0e-08 62.4 231 28.1
AT1G53840 Arabidopsis thaliana HOM05D000036 ORTHO05D002265 9.2e-08 62.0 152 29.6
Peaxi162Scf00038g02343 Petunia axillaris HOM05D000036 ORTHO05D000095 1.2e-07 61.6 216 24.1
QL05p001219 Quercus lobata HOM05D000036 ORTHO05D002265 1.2e-07 61.6 168 28.0
Aa31LG8G1570 Aethionema arabicum HOM05D000036 ORTHO05D000095 1.6e-07 61.2 168 28.6
Thhalv10022003m.g Eutrema salsugineum HOM05D000036 ORTHO05D002265 1.6e-07 61.2 184 26.1
Sp1g40330 Schrenkiella parvula HOM05D000036 ORTHO05D002265 1.6e-07 61.2 152 29.6
AT3G14300 Arabidopsis thaliana HOM05D000036 ORTHO05D002265 2.0e-07 60.8 183 27.9
Sed0006981 Sechium edule HOM05D000281 ORTHO05D009440 2.0e-07 60.8 250 25.2
VMungo0331G1482 Vigna mungo HOM05D000036 ORTHO05D002265 2.0e-07 60.8 177 29.4
Ca_23446_v3 Cicer arietinum L. HOM05D000036 ORTHO05D002265 2.7e-07 60.5 173 30.6
CsaV3_1G005300 Cucumis sativus L. HOM05D000281 ORTHO05D009440 2.7e-07 60.5 250 22.4
Atru.chr1.678 Acer truncatum HOM05D000281 ORTHO05D000290 3.5e-07 60.1 177 28.8
Actinidia19045 Actinidia chinensis HOM05D008788 ORTHO05D009440 3.5e-07 60.1 135 28.9
arahy.Tifrunner.gnm1.ann1.F2KJAJ Arachis hypogaea HOM05D000036 ORTHO05D002265 3.5e-07 60.1 183 28.4
BolC6t36033H Brassica oleracea HOM05D000036 ORTHO05D002265 4.6e-07 59.7 193 28.5
Sabra01G0130000 Salix brachista HOM05D000036 ORTHO05D002265 4.6e-07 59.7 192 24.0
Aqoxy2G00650 Aquilegia oxysepala HOM05D000036 ORTHO05D009440 5.9e-07 59.3 184 26.6
arahy.Tifrunner.gnm1.ann1.Z6NG0Q Arachis hypogaea HOM05D000036 ORTHO05D002265 5.9e-07 59.3 183 28.4
ECA234G0822 Erigeron canadensis HOM05D000036 ORTHO05D002265 5.9e-07 59.3 225 21.8
HanXRQChr08g0235691 Helianthus annuus HOM05D000036 ORTHO05D009440 5.9e-07 59.3 250 20.8
Nitab4.5_0008337g0040 Nicotiana tabacum HOM05D000036 ORTHO05D002265 5.9e-07 59.3 177 24.3
SalBow5G2058 Salvia bowleyana HOM05D008788 ORTHO05D009440 5.9e-07 59.3 139 31.7
Aqoxy7G00930 Aquilegia oxysepala HOM05D000036 ORTHO05D009440 7.8e-07 58.9 261 23.8
Hma1.2p1_0229F.1_g097090 Hydrangea macrophylla HOM05D000036 ORTHO05D002265 7.8e-07 58.9 222 25.2
Lju682C3T2 Lonicera japonica HOM05D008788 ORTHO05D009440 1.0e-06 58.5 122 30.3
Nn6g35732 Nelumbo nucifera HOM05D000036 ORTHO05D002265 1.0e-06 58.5 219 26.5
SGA_v2.0_scaffold56G20027 Striga asiatica HOM05D000281 ORTHO05D009440 1.0e-06 58.5 222 27.0
CiPaw.02G131000 Carya illinoinensis HOM05D000036 ORTHO05D002265 1.3e-06 58.2 158 26.6
Lalb_Chr17g0343221 Lupinus albus HOM05D000036 ORTHO05D002265 1.3e-06 58.2 178 29.8
Nitab4.5_0010687g0010 Nicotiana tabacum HOM05D000036 ORTHO05D002265 1.3e-06 58.2 177 24.3
Cc04_g17010 Coffea canephora HOM05D008788 ORTHO05D012497 1.7e-06 57.8 280 24.6
HanXRQChr08g0236311 Helianthus annuus HOM05D000036 ORTHO05D009440 1.7e-06 57.8 249 22.9
Oeu060796.1 Olea europaea HOM05D008788 ORTHO05D012497 1.7e-06 57.8 306 27.5
SEGI_29462 Sequoiadendron giganteum HOM05D000036 ORTHO05D000095 1.7e-06 57.8 191 29.8
TWI23G0515 Tripterygium wilfordii HOM05D000036 ORTHO05D002265 2.3e-06 57.4 188 25.5
Migut.D01837 Erythranthe guttata HOM05D008788 ORTHO05D012497 2.9e-06 57.0 278 27.0
PSO135G1004 Papaver somniferum HOM05D000036 ORTHO05D002265 2.9e-06 57.0 180 26.1
Migut.D01838 Erythranthe guttata HOM05D018109 ORTHO05D017864 3.9e-06 56.6 285 29.8
AL3G26620 Arabidopsis lyrata HOM05D000036 ORTHO05D002265 5.0e-06 56.2 226 24.8
BcaB07g33288 Brassica carinata HOM05D000036 ORTHO05D002265 5.0e-06 56.2 145 30.3
HanXRQChr08g0235671 Helianthus annuus HOM05D000036 ORTHO05D009440 5.0e-06 56.2 251 20.3
Migut.D00910 Erythranthe guttata HOM05D000036 ORTHO05D002265 6.6e-06 55.8 187 26.7
Migut.D01839 Erythranthe guttata HOM05D018109 ORTHO05D017864 6.6e-06 55.8 303 26.4
Nn8g38513 Nelumbo nucifera HOM05D000036 ORTHO05D009440 6.6e-06 55.8 192 25.0
Aqoxy7G00087 Aquilegia oxysepala HOM05D000036 ORTHO05D000095 8.6e-06 55.5 251 25.1
Cc04_g16990 Coffea canephora HOM05D008788 ORTHO05D012497 8.6e-06 55.5 310 27.1


User provided reference genes

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