Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g16990 Coffea canephora HOM05D008788 ORTHO05D012497 2.2e-149 532.3 284 100.0
Cc04_g17010 Coffea canephora HOM05D008788 ORTHO05D012497 1.4e-39 167.5 286 39.2
Cc06_g20620 Coffea canephora HOM05D000393 ORTHO05D000275 1.8e-29 134.0 82 89.0
PGSC0003DMG400018146 Solanum tuberosum HOM05D008788 ORTHO05D012497 5.5e-23 112.5 283 34.3
Peaxi162Scf00009g00114 Petunia axillaris HOM05D001734 ORTHO05D003483 1.2e-22 111.3 267 34.1
Nitab4.5_0000785g0060 Nicotiana tabacum HOM05D008788 ORTHO05D012497 4.6e-22 109.4 273 33.3
Nitab4.5_0000984g0100 Nicotiana tabacum HOM05D008788 ORTHO05D012497 1.0e-21 108.2 273 32.2
Sopen03g032040 Solanum pennellii HOM05D008788 ORTHO05D012497 5.1e-21 105.9 276 33.0
Sopen03g032030 Solanum pennellii HOM05D008788 ORTHO05D012497 1.1e-20 104.8 284 32.7
Solyc03g112960.1 Solanum lycopersicum HOM05D008788 ORTHO05D012497 2.0e-20 104.0 288 32.3
Solyc03g112970.1 Solanum lycopersicum HOM05D008788 ORTHO05D012497 5.7e-20 102.4 276 32.6
Hma1.2p1_0735F.1_g210420 Hydrangea macrophylla HOM05D000281 ORTHO05D009440 7.4e-20 102.1 233 32.6
Hma1.2p1_0104F.1_g050070 Hydrangea macrophylla HOM05D000036 ORTHO05D009440 2.6e-17 93.6 200 33.0
Hma1.2p1_0104F.1_g050076 Hydrangea macrophylla HOM05D000036 ORTHO05D009440 2.6e-17 93.6 200 33.0
Oeu060796.1 Olea europaea HOM05D008788 ORTHO05D012497 3.4e-17 93.2 284 34.2
Cpa.g.sc25.193 Carica papaya HOM05D000036 ORTHO05D002265 7.7e-17 92.0 252 28.2
vmacro18768 Vaccinium macrocarpon HOM05D000036 ORTHO05D002265 2.9e-16 90.1 186 32.3
PGR119G0854 Punica granatum HOM05D000036 ORTHO05D002265 1.9e-15 87.4 249 26.9
TWI59G0275 Tripterygium wilfordii HOM05D000036 ORTHO05D002265 1.9e-15 87.4 180 32.2
Rhsim08G0244700 Rhododendron simsii HOM05D000036 ORTHO05D002265 4.2e-15 86.3 238 29.0
CAN.G1673.12 Capsicum annuum HOM05D008788 ORTHO05D012497 7.2e-15 85.5 229 31.4
Potri.001G108200 Populus trichocarpa HOM05D000281 ORTHO05D009440 1.2e-14 84.7 240 32.5
Dinv19941 Davidia involucrata HOM05D000036 ORTHO05D009440 3.6e-14 83.2 190 32.6
Thecc.09G068800 Theobroma cacao HOM05D000036 ORTHO05D002265 7.9e-14 82.0 249 26.9
Manes.14G076700 Manihot esculenta HOM05D000281 ORTHO05D009440 1.0e-13 81.6 243 29.2
Nn6g35732 Nelumbo nucifera HOM05D000036 ORTHO05D002265 1.0e-13 81.6 235 27.2
Sabra03G0043500 Salix brachista HOM05D000036 ORTHO05D002265 1.4e-13 81.3 202 28.7
Nitab4.5_0000741g0040 Nicotiana tabacum HOM05D008788 ORTHO05D012497 2.3e-13 80.5 242 29.3
Thecc.03G083700 Theobroma cacao HOM05D000281 ORTHO05D009440 2.3e-13 80.5 244 26.2
CAN.G1305.14 Capsicum annuum HOM05D008788 ORTHO05D012497 3.0e-13 80.1 264 29.5
QL05p001219 Quercus lobata HOM05D000036 ORTHO05D002265 3.0e-13 80.1 196 30.1
BcaC08g43560 Brassica carinata HOM05D000036 ORTHO05D002265 3.9e-13 79.7 241 24.9
FAN02G4144 Fragaria x ananassa HOM05D000036 ORTHO05D002265 3.9e-13 79.7 251 27.1
FAN05G2733 Fragaria x ananassa HOM05D000036 ORTHO05D002265 3.9e-13 79.7 251 27.1
Hma1.2p1_0090F.1_g045840 Hydrangea macrophylla HOM05D000036 ORTHO05D002265 3.9e-13 79.7 235 24.7
Prupe.3G031000 Prunus persica HOM05D000036 ORTHO05D000095 3.9e-13 79.7 241 28.6
RcHm_v2.0_Chr2g0147861 Rosa chinensis HOM05D000036 ORTHO05D002265 3.9e-13 79.7 241 29.5
Sabra01G0081700 Salix brachista HOM05D000281 ORTHO05D009440 3.9e-13 79.7 235 31.1
Potri.003G123500 Populus trichocarpa HOM05D000281 ORTHO05D009440 6.7e-13 79.0 248 30.2
Cpa.g.sc17.229 Carica papaya HOM05D000281 ORTHO05D009440 3.3e-12 76.6 180 29.4
Nitab4.5_0000026g0150 Nicotiana tabacum HOM05D008788 ORTHO05D012497 3.3e-12 76.6 188 30.9
Oeu053422.1 Olea europaea HOM05D000036 ORTHO05D002265 3.3e-12 76.6 252 25.0
BraA06t23309Z Brassica rapa HOM05D000036 ORTHO05D002265 5.7e-12 75.9 187 26.2
Aqoxy2G00650 Aquilegia oxysepala HOM05D000036 ORTHO05D009440 7.4e-12 75.5 191 29.3
MD17G1154400 Malus domestica HOM05D000036 ORTHO05D002265 9.7e-12 75.1 242 27.7
ATR0099G099 Amborella trichopoda HOM05D000036 ORTHO05D002265 1.7e-11 74.3 191 28.3
A06p00750 Brassica napus HOM05D000036 ORTHO05D002265 1.7e-11 74.3 187 25.7
Cfa018963 Carpinus fangiana HOM05D000281 ORTHO05D009440 1.7e-11 74.3 222 28.4
TWI23G0515 Tripterygium wilfordii HOM05D000036 ORTHO05D002265 1.7e-11 74.3 190 28.9
A05p17870 Brassica napus HOM05D000036 ORTHO05D002265 2.2e-11 73.9 247 24.7
BraA05t20677Z Brassica rapa HOM05D000036 ORTHO05D002265 2.2e-11 73.9 247 24.7
BolC6t36033H Brassica oleracea HOM05D000036 ORTHO05D002265 2.8e-11 73.6 237 24.5
FvH4_6g35820 Fragaria vesca HOM05D000036 ORTHO05D002265 2.8e-11 73.6 251 24.3
FAN09G4552 Fragaria x ananassa HOM05D000036 ORTHO05D002265 2.8e-11 73.6 251 24.3
FAN14G2322 Fragaria x ananassa HOM05D000036 ORTHO05D002265 2.8e-11 73.6 251 24.3
AT1G53840 Arabidopsis thaliana HOM05D000036 ORTHO05D002265 3.7e-11 73.2 176 26.7
FAN14G0632 Fragaria x ananassa HOM05D000036 ORTHO05D002265 3.7e-11 73.2 251 24.3
Sc04g0002530 Simmondsia chinensis HOM05D000281 ORTHO05D009440 4.8e-11 72.8 233 29.2
AL1G62550 Arabidopsis lyrata HOM05D000036 ORTHO05D002265 6.3e-11 72.4 176 26.7
CANSAT56G2197 Cannabis sativa HOM05D000036 ORTHO05D002265 6.3e-11 72.4 195 25.1
CiPaw.11G042300 Carya illinoinensis HOM05D000036 ORTHO05D009440 6.3e-11 72.4 241 27.8
FAN02G2582 Fragaria x ananassa HOM05D000036 ORTHO05D000095 6.3e-11 72.4 251 24.3
Prupe.5G189700 Prunus persica HOM05D000281 ORTHO05D009440 8.2e-11 72.0 214 29.4
Manes.03G057000 Manihot esculenta HOM05D000036 ORTHO05D002265 1.1e-10 71.6 246 26.0
Sabra03G0087100 Salix brachista HOM05D000281 ORTHO05D009440 1.4e-10 71.2 240 27.5
THA.LOC104815596 Tarenaya hassleriana HOM05D000036 ORTHO05D002265 1.4e-10 71.2 181 25.4
Dinv25498 Davidia involucrata HOM05D000036 ORTHO05D002265 1.8e-10 70.9 251 26.7
ECA246G4295 Erigeron canadensis HOM05D000036 ORTHO05D009440 1.8e-10 70.9 222 27.0
CARHR044170 Cardamine hirsuta HOM05D000036 ORTHO05D002265 3.1e-10 70.1 175 25.1
Thhalv10011342m.g Eutrema salsugineum HOM05D000036 ORTHO05D002265 3.1e-10 70.1 180 26.1
Lj9C538G10 Lonicera japonica HOM05D000036 ORTHO05D002265 4.1e-10 69.7 210 27.6
MD09G1172900 Malus domestica HOM05D000036 ORTHO05D002265 4.1e-10 69.7 185 29.2
BolC6t36710H Brassica oleracea HOM05D000036 ORTHO05D002265 5.3e-10 69.3 247 24.3
Glyma.16G014000 Glycine max HOM05D000036 ORTHO05D002265 5.3e-10 69.3 191 27.7
Lalb_Chr04g0253941 Lupinus albus HOM05D000036 ORTHO05D002265 5.3e-10 69.3 204 27.0
Sp1g40330 Schrenkiella parvula HOM05D000036 ORTHO05D002265 5.3e-10 69.3 185 27.0
MELO3C001969.2 Cucumis melo HOM05D000281 ORTHO05D009440 7.0e-10 68.9 217 29.0
Atru.chr9.2281 Acer truncatum HOM05D000281 ORTHO05D009440 9.1e-10 68.6 183 25.7
BcaB07g33288 Brassica carinata HOM05D000036 ORTHO05D002265 9.1e-10 68.6 183 25.1
Aa31LG8G1570 Aethionema arabicum HOM05D000036 ORTHO05D000095 1.2e-09 68.2 136 30.9
BcaB02g10885 Brassica carinata HOM05D000036 ORTHO05D002265 1.2e-09 68.2 178 25.3
AUR62001403 Chenopodium quinoa HOM05D000036 ORTHO05D000095 1.2e-09 68.2 245 24.9
PSO135G1004 Papaver somniferum HOM05D000036 ORTHO05D002265 1.6e-09 67.8 179 28.5
VMungo0331G1482 Vigna mungo HOM05D000036 ORTHO05D002265 1.6e-09 67.8 191 27.7
Carub.0001s4312 Capsella rubella HOM05D000036 ORTHO05D002265 2.0e-09 67.4 227 22.9
CsaV3_1G005300 Cucumis sativus L. HOM05D000281 ORTHO05D009440 3.5e-09 66.6 217 27.2
Peaxi162Scf00009g00113 Petunia axillaris HOM05D000281 ORTHO05D009440 4.5e-09 66.2 186 28.0
Nitab4.5_0000741g0020 Nicotiana tabacum HOM05D008788 ORTHO05D012497 7.7e-09 65.5 189 30.2
RcHm_v2.0_Chr7g0180951 Rosa chinensis HOM05D000281 ORTHO05D009440 7.7e-09 65.5 248 27.0
Nitab4.5_0008337g0040 Nicotiana tabacum HOM05D000036 ORTHO05D002265 1.3e-08 64.7 206 22.8
Phvul.010G123132 Phaseolus vulgaris HOM05D000036 ORTHO05D002265 1.3e-08 64.7 190 26.8
BcaC08g44138 Brassica carinata HOM05D000036 ORTHO05D002265 1.7e-08 64.3 247 23.5
C06p15380 Brassica napus HOM05D000036 ORTHO05D002265 1.7e-08 64.3 247 23.5
Gorai.009G147800 Gossypium raimondii HOM05D000036 ORTHO05D002265 1.7e-08 64.3 195 25.1
QL10p016430 Quercus lobata HOM05D000281 ORTHO05D009440 1.7e-08 64.3 228 27.2
TWI81G0565 Tripterygium wilfordii HOM05D000281 ORTHO05D009440 1.7e-08 64.3 214 25.7
Gohir.A05G141600 Gossypium hirsutum HOM05D000036 ORTHO05D002265 2.9e-08 63.5 195 24.6
Gohir.D05G143900 Gossypium hirsutum HOM05D000036 ORTHO05D002265 2.9e-08 63.5 195 25.1
arahy.Tifrunner.gnm1.ann1.Z6NG0Q Arachis hypogaea HOM05D000036 ORTHO05D002265 3.8e-08 63.2 190 23.2
A03p38740 Brassica napus HOM05D000036 ORTHO05D002265 3.8e-08 63.2 241 23.2
BraA03t13022Z Brassica rapa HOM05D000036 ORTHO05D002265 3.8e-08 63.2 241 23.2
Lj5C112G10 Lonicera japonica HOM05D000036 ORTHO05D009440 3.8e-08 63.2 165 30.9
MELO3C022701.2 Cucumis melo HOM05D000036 ORTHO05D002265 5.0e-08 62.8 184 22.8
Nitab4.5_0010687g0010 Nicotiana tabacum HOM05D000036 ORTHO05D002265 6.5e-08 62.4 206 22.8
CsaV3_3G031020 Cucumis sativus L. HOM05D000036 ORTHO05D002265 1.1e-07 61.6 184 23.4
AUR62025614 Chenopodium quinoa HOM05D000036 ORTHO05D000095 1.9e-07 60.8 180 27.2
AUR62043502 Chenopodium quinoa HOM05D000036 ORTHO05D000095 1.9e-07 60.8 180 27.2
Lalb_Chr17g0343221 Lupinus albus HOM05D000036 ORTHO05D002265 1.9e-07 60.8 196 26.0
arahy.Tifrunner.gnm1.ann1.F2KJAJ Arachis hypogaea HOM05D000036 ORTHO05D002265 3.2e-07 60.1 190 22.6
BcaC01g03939 Brassica carinata HOM05D000036 ORTHO05D002265 3.2e-07 60.1 238 22.7
BolC3t16954H Brassica oleracea HOM05D000036 ORTHO05D002265 3.2e-07 60.1 238 22.7
Peaxi162Scf00267g00131 Petunia axillaris HOM05D008788 ORTHO05D012497 3.2e-07 60.1 283 24.7
Sed0004119 Sechium edule HOM05D000036 ORTHO05D002265 3.2e-07 60.1 193 23.8
C03p46880 Brassica napus HOM05D000036 ORTHO05D002265 5.5e-07 59.3 241 22.8
ClCG07G014280 Citrullus lanatus HOM05D000036 ORTHO05D000095 1.2e-06 58.2 184 22.3
HanXRQChr10g0311761 Helianthus annuus HOM05D000036 ORTHO05D002265 1.6e-06 57.8 235 23.4
PGSC0003DMG400018147 Solanum tuberosum HOM05D008788 ORTHO05D012497 1.6e-06 57.8 132 37.1
Cc04_g17040 Coffea canephora HOM05D008788 ORTHO05D017864 2.1e-06 57.4 310 27.1
Thhalv10022003m.g Eutrema salsugineum HOM05D000036 ORTHO05D002265 2.7e-06 57.0 227 25.1
Medtr8g023150 Medicago truncatula HOM05D000036 ORTHO05D002265 2.7e-06 57.0 258 25.6
C06p09610 Brassica napus HOM05D000036 ORTHO05D002265 6.1e-06 55.8 149 24.2
QL05p001195 Quercus lobata HOM05D000036 ORTHO05D050620 6.1e-06 55.8 160 26.2


User provided reference genes

Program Settings