Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.6e-172 609.4 312 100.0
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 3.9e-171 604.7 312 99.4
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 4.2e-93 345.5 272 65.4
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.2e-87 327.4 287 60.6
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.0e-86 324.3 284 60.9
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 1.7e-86 323.6 290 58.6
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 2.2e-86 323.2 312 57.4
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 3.8e-86 322.4 308 55.8
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 1.5e-85 320.5 272 61.8
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 2.5e-85 319.7 272 61.4
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 4.2e-85 318.9 299 59.5
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 5.5e-85 318.5 289 57.4
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 3.0e-83 312.8 301 55.8
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 4.0e-83 312.4 298 58.4
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 5.2e-83 312.0 316 55.1
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 1.2e-82 310.8 300 55.0
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 2.0e-82 310.1 262 62.2
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.6e-82 309.7 284 58.1
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 4.4e-82 308.9 283 55.8
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 5.7e-82 308.5 304 55.3
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 9.8e-82 307.8 294 56.1
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 2.8e-81 306.2 272 59.2
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 2.8e-81 306.2 313 53.7
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 4.9e-81 305.4 286 57.7
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 4.9e-81 305.4 286 57.7
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 4.9e-81 305.4 286 57.7
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 6.3e-81 305.1 282 57.8
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 1.1e-80 304.3 313 54.0
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 1.8e-80 303.5 315 54.6
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 4.1e-80 302.4 271 59.0
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 7.0e-80 301.6 311 55.6
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 7.0e-80 301.6 286 57.0
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.7e-79 299.7 294 55.8
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 4.5e-79 298.9 313 54.6
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 1.3e-78 297.4 287 55.4
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 8.6e-78 294.7 284 56.0
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 4.3e-77 292.4 310 54.2
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 7.3e-77 291.6 271 57.2
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 9.5e-77 291.2 294 54.4
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 9.5e-77 291.2 272 57.7
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 1.6e-76 290.4 272 56.6
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 2.8e-76 289.7 288 54.9
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 8.0e-76 288.1 314 52.5
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 2.3e-75 286.6 295 55.3
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 8.9e-75 284.6 291 54.0
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 5.7e-74 282.0 286 54.2
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 7.5e-74 281.6 291 54.6
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 9.8e-74 281.2 306 52.3
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.7e-73 280.4 288 54.9
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 8.3e-73 278.1 292 54.8
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 1.4e-72 277.3 316 52.2
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 1.4e-72 277.3 295 52.5
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 2.4e-72 276.6 224 63.4
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 3.2e-72 276.2 295 53.2
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.6e-71 273.9 302 50.0
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.6e-71 273.9 281 53.4
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 2.0e-71 273.5 270 54.8
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 3.5e-71 272.7 272 54.8
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 5.9e-71 271.9 382 47.4
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 7.8e-71 271.6 287 51.2
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 3.0e-70 269.6 286 52.1
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.0e-70 269.6 304 51.0
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 5.0e-70 268.9 269 54.3
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 3.3e-69 266.2 289 53.3
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 3.3e-69 266.2 273 52.4
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 7.3e-69 265.0 252 56.7
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 9.5e-69 264.6 286 52.1
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 3.6e-68 262.7 311 49.2
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 3.6e-68 262.7 305 48.5
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 8.0e-68 261.5 291 49.8
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 1.0e-67 261.2 271 52.4
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.8e-67 260.4 272 52.2
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 2.3e-67 260.0 290 50.0
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 5.2e-67 258.8 282 51.4
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 1.5e-66 257.3 253 55.3
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 1.5e-66 257.3 287 49.8
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 2.6e-66 256.5 309 49.8
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 5.8e-66 255.4 308 47.4
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 3.7e-65 252.7 292 49.0
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 8.3e-65 251.5 259 52.1
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 1.9e-64 250.4 290 50.0
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.9e-64 250.4 285 50.5
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 2.4e-64 250.0 269 52.0
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 9.2e-64 248.1 316 46.8
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 6.6e-62 241.9 290 48.6
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 1.5e-61 240.7 270 49.6
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 3.3e-61 239.6 267 51.3
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 3.3e-61 239.6 223 55.2
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 6.2e-60 235.3 289 47.1
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 1.1e-59 234.6 273 46.2
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.2e-58 231.1 290 47.2
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 2.0e-58 230.3 285 44.2
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 2.6e-58 229.9 314 48.1
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 3.7e-57 226.1 316 44.3
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 5.4e-56 222.2 260 45.8
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.5e-53 214.2 270 45.6
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 7.3e-53 211.8 298 44.0
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 7.3e-53 211.8 274 45.3
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 2.0e-50 203.8 261 46.0
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 2.6e-50 203.4 198 55.1
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 2.2e-49 200.3 272 45.2
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 1.6e-47 194.1 288 41.0
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 4.6e-47 192.6 254 45.7
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 1.5e-45 187.6 209 52.2
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 3.3e-37 159.8 191 51.3
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 3.3e-37 159.8 228 41.7
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 8.1e-36 155.2 171 46.8
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 7.1e-32 142.1 274 35.0
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 6.7e-30 135.6 136 51.5
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 1.5e-29 134.4 259 33.2
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 4.8e-28 129.4 206 38.8
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.8e-27 127.5 161 44.7
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.4e-25 118.6 130 49.2
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.3e-22 110.5 130 49.2
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.9e-22 109.8 194 38.1
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 8.7e-22 108.6 220 33.2
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 1.4e-19 101.3 214 36.0
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 6.9e-19 99.0 186 37.6
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 2.9e-17 93.6 165 37.6
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 3.8e-17 93.2 106 53.8
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.9e-17 92.8 180 36.7
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.9e-17 92.8 180 36.7
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 4.9e-17 92.8 166 35.5
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 7.9e-15 85.5 131 40.5
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 7.4e-13 79.0 94 47.9
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 9.7e-13 78.6 129 37.2
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.6e-12 77.8 164 32.9
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 6.9e-11 72.4 61 60.7
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.0e-11 72.0 63 57.1
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.0e-11 72.0 63 57.1
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.0e-10 70.9 62 54.8
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 1.7e-09 67.8 112 40.2
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 8.5e-09 65.5 68 48.5
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 8.5e-09 65.5 65 50.8
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 8.5e-09 65.5 68 48.5
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.4e-08 64.7 55 58.2
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 4.2e-08 63.2 95 40.0
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.8e-06 57.8 131 31.3
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 1.8e-06 57.8 175 29.7


User provided reference genes

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