Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 3.2e-215 751.5 391 100.0
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 2.7e-153 545.8 379 73.9
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 6.6e-152 541.2 396 72.5
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 4.7e-150 535.0 396 71.7
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 1.1e-149 533.9 381 74.5
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 2.6e-148 529.3 405 69.6
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 9.8e-148 527.3 379 71.8
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 1.3e-147 526.9 386 71.5
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 8.3e-147 524.2 394 69.8
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 4.6e-145 518.5 396 68.7
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 4.3e-143 511.9 394 68.5
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 7.3e-143 511.1 394 68.3
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 1.2e-140 503.8 384 70.3
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 3.4e-140 502.3 412 66.7
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 3.4e-140 502.3 377 71.4
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 4.4e-140 501.9 393 68.4
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 5.8e-140 501.5 378 69.3
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 2.2e-139 499.6 398 66.6
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 3.7e-139 498.8 393 69.2
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 1.6e-137 493.4 394 67.0
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 6.0e-137 491.5 403 64.0
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 6.0e-137 491.5 395 67.8
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 1.0e-136 490.7 379 67.3
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 1.3e-136 490.3 389 68.9
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 1.7e-136 490.0 381 67.7
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 3.0e-136 489.2 404 67.3
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 3.0e-136 489.2 394 66.5
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 3.9e-136 488.8 382 67.8
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 8.6e-136 487.6 390 64.9
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 1.5e-135 486.9 385 67.8
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.5e-135 486.1 376 67.0
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 5.6e-135 485.0 426 64.3
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 1.2e-134 483.8 380 67.6
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 4.7e-134 481.9 393 67.4
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 1.8e-133 479.9 383 66.8
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 2.4e-133 479.6 381 68.8
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 3.1e-133 479.2 381 65.6
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 5.2e-133 478.4 361 69.8
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 6.8e-133 478.0 392 64.8
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 1.2e-132 477.2 381 65.6
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 1.5e-132 476.9 394 65.2
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 2.6e-132 476.1 380 64.7
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 9.9e-132 474.2 403 64.0
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 1.7e-131 473.4 393 66.7
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 2.9e-131 472.6 400 63.8
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 8.4e-131 471.1 380 66.6
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 8.4e-131 471.1 394 66.5
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 2.4e-130 469.5 385 62.6
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 5.4e-130 468.4 386 65.5
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 4.6e-129 465.3 406 62.8
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 4.6e-129 465.3 403 61.0
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 7.8e-129 464.5 406 63.1
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 1.0e-128 464.2 379 64.4
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 2.3e-128 463.0 407 63.9
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 1.1e-127 460.7 389 64.5
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 1.1e-127 460.7 400 63.5
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.9e-127 459.9 400 63.2
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 5.6e-127 458.4 399 63.7
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 7.3e-127 458.0 382 65.4
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 2.1e-126 456.4 380 63.9
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 2.8e-126 456.1 392 64.8
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 2.8e-126 456.1 384 63.5
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 2.8e-126 456.1 380 64.2
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.6e-126 455.7 400 63.2
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 4.8e-126 455.3 382 63.6
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 4.8e-126 455.3 403 62.8
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 8.1e-126 454.5 381 63.0
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 1.1e-125 454.1 400 63.0
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 2.4e-125 453.0 380 64.5
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 2.4e-125 453.0 380 64.5
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 2.4e-125 453.0 379 63.6
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 9.0e-125 451.1 382 62.0
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 1.5e-124 450.3 415 61.0
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 2.0e-124 449.9 381 64.0
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 2.0e-124 449.9 381 64.0
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 4.4e-124 448.7 381 63.0
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 5.8e-124 448.4 435 59.3
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 2.2e-123 446.4 405 62.0
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 2.9e-123 446.0 379 62.3
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 1.4e-122 443.7 384 61.5
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 1.4e-122 443.7 403 61.3
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 1.4e-122 443.7 391 61.6
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 2.4e-122 443.0 390 61.8
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.0e-120 437.6 372 63.2
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 5.1e-120 435.3 372 62.9
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 4.0e-117 425.6 394 58.1
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 2.0e-116 423.3 362 65.2
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 5.8e-116 421.8 391 60.6
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 9.3e-114 414.5 459 54.5
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 1.0e-112 411.0 388 60.8
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 3.0e-112 409.5 373 57.9
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 1.9e-111 406.8 350 64.6
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 3.3e-111 406.0 399 56.6
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 6.2e-110 401.7 358 62.3
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 2.4e-109 399.8 357 63.3
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 3.1e-109 399.4 352 63.4
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 5.8e-108 395.2 342 63.7
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 1.3e-107 394.0 333 64.3
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.3e-104 384.0 290 72.4
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 8.4e-99 364.8 400 54.2
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 2.2e-94 350.1 418 48.8
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 3.2e-90 336.3 251 69.7
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 5.3e-85 318.9 302 57.0
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 5.0e-83 312.4 392 47.4
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 6.3e-78 295.4 396 45.7
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 2.2e-75 287.0 390 43.8
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 2.2e-75 287.0 390 43.8
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 3.0e-72 276.6 380 41.8
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 3.2e-66 256.5 157 81.5
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 2.9e-38 163.7 388 32.0
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 5.6e-34 149.4 122 68.9
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 8.9e-32 142.1 113 65.5
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 1.1e-29 135.2 141 50.4
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 6.0e-28 129.4 343 31.5
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 1.5e-18 98.2 88 56.8
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 2.1e-17 94.4 187 36.4
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 3.1e-16 90.5 146 39.0
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 4.9e-14 83.2 50 74.0
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 3.2e-13 80.5 50 74.0
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 3.2e-13 80.5 50 74.0
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 5.4e-13 79.7 52 71.2
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 1.8e-08 64.7 46 63.0
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 4.0e-08 63.5 90 46.7
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 4.9e-06 56.6 90 45.6


User provided reference genes

Program Settings