Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g16540 Coffea canephora HOM05D007106 ORTHO05D007770 7.6e-43 176.8 91 100.0
Oeu047292.1 Olea europaea HOM05D007106 ORTHO05D007770 9.7e-14 80.1 84 58.3
Prupe.5G194500 Prunus persica HOM05D007106 ORTHO05D007770 1.8e-12 75.9 90 55.6
CSS0012235 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 4.1e-12 74.7 84 54.8
CSS0040002 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 4.1e-12 74.7 84 54.8
Dinv38719 Davidia involucrata HOM05D007106 ORTHO05D007770 5.3e-12 74.3 86 53.5
Hma1.2p1_1936F.1_g308220 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 6.9e-12 73.9 89 49.4
Hma1.2p1_2516F.1_g323695 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 6.9e-12 73.9 89 49.4
RcHm_v2.0_Chr7g0181551 Rosa chinensis HOM05D007106 ORTHO05D007770 6.9e-12 73.9 85 55.3
Ciclev10022899m.g Citrus clementina HOM05D007106 ORTHO05D007770 9.1e-12 73.6 88 52.3
Actinidia04893 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.2e-11 73.2 83 51.8
Actinidia37624 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.2e-11 73.2 83 59.0
Manes.06G091700 Manihot esculenta HOM05D007106 ORTHO05D007770 2.0e-11 72.4 89 49.4
Thecc.03G089800 Theobroma cacao HOM05D007106 ORTHO05D007770 2.0e-11 72.4 86 53.5
COL.COLO4_08636 Corchorus olitorius HOM05D007106 ORTHO05D007770 4.5e-11 71.2 86 54.7
Eucgr.K02478 Eucalyptus grandis HOM05D007106 ORTHO05D007770 4.5e-11 71.2 84 53.6
MD14G1201500 Malus domestica HOM05D007106 ORTHO05D007770 7.7e-11 70.5 87 52.9
GSVIVG01007993001 Vitis vinifera HOM05D007106 ORTHO05D007770 7.7e-11 70.5 85 56.5
Gohir.D03G093700 Gossypium hirsutum HOM05D007106 ORTHO05D007770 1.0e-10 70.1 85 56.5
Gorai.003G097700 Gossypium raimondii HOM05D007106 ORTHO05D007770 1.0e-10 70.1 85 56.5
Cpa.g.sc423.1 Carica papaya HOM05D007106 ORTHO05D007770 2.2e-10 68.9 90 50.0
Gohir.A03G067200 Gossypium hirsutum HOM05D007106 ORTHO05D007770 2.2e-10 68.9 85 56.5
Sed0002642 Sechium edule HOM05D007106 ORTHO05D007770 2.9e-10 68.6 89 49.4
CiPaw.11G045300 Carya illinoinensis HOM05D007106 ORTHO05D007770 3.8e-10 68.2 85 54.1
FAN08G1525 Fragaria x ananassa HOM05D007106 ORTHO05D007770 3.8e-10 68.2 85 56.5
TAR374G1315 Trochodendron aralioides HOM05D007106 ORTHO05D007770 3.8e-10 68.2 86 51.2
FvH4_5g14840 Fragaria vesca HOM05D007106 ORTHO05D007770 6.5e-10 67.4 85 52.9
FAN18G2192 Fragaria x ananassa HOM05D007106 ORTHO05D007770 6.5e-10 67.4 85 52.9
vmacro17537 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 6.5e-10 67.4 81 46.9
PGSC0003DMG400019989 Solanum tuberosum HOM05D007106 ORTHO05D007770 1.9e-09 65.9 78 50.0
CsaV3_1G005530 Cucumis sativus L. HOM05D007106 ORTHO05D007770 2.5e-09 65.5 88 51.1
MD06G1194400 Malus domestica HOM05D007106 ORTHO05D007770 2.5e-09 65.5 85 52.9
Cfa018934 Carpinus fangiana HOM05D007106 ORTHO05D007770 3.2e-09 65.1 80 55.0
QL10p017125 Quercus lobata HOM05D007106 ORTHO05D007770 3.2e-09 65.1 80 56.2
Duzib205G0867 Durio zibethinus HOM05D007106 ORTHO05D007770 5.5e-09 64.3 86 52.3
Actinidia35002 Actinidia chinensis HOM05D007106 ORTHO05D007770 7.2e-09 63.9 82 52.4
ClCG04G012220 Citrullus lanatus HOM05D007106 ORTHO05D007770 7.2e-09 63.9 88 45.5
MELO3C001986.2 Cucumis melo HOM05D007106 ORTHO05D007770 7.2e-09 63.9 88 51.1
Nitab4.5_0006000g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 7.2e-09 63.9 70 50.0
Manes.14G078900 Manihot esculenta HOM05D007106 ORTHO05D007770 9.4e-09 63.5 90 46.7
Rhsim12G0155900 Rhododendron simsii HOM05D007106 ORTHO05D007770 1.2e-08 63.2 84 51.2
Sed0016719 Sechium edule HOM05D007106 ORTHO05D007770 1.6e-08 62.8 89 46.1
Solyc07g150120.1 Solanum lycopersicum HOM05D007106 ORTHO05D007770 1.6e-08 62.8 78 44.9
Nitab4.5_0000121g0170 Nicotiana tabacum HOM05D007106 ORTHO05D007770 2.1e-08 62.4 86 48.8
Sopen12g025630 Solanum pennellii HOM05D007106 ORTHO05D007770 2.1e-08 62.4 78 46.2
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 2.7e-08 62.0 88 46.6
Psat4g050160 Pisum sativum HOM05D007106 ORTHO05D007770 2.7e-08 62.0 88 47.7
Nn3g17263 Nelumbo nucifera HOM05D007106 ORTHO05D007770 4.7e-08 61.2 88 47.7
Actinidia19038 Actinidia chinensis HOM05D007106 ORTHO05D007770 6.1e-08 60.8 82 51.2
CiPaw.12G013000 Carya illinoinensis HOM05D007106 ORTHO05D007770 6.1e-08 60.8 85 49.4
DCAR_013492 Daucus carota HOM05D007691 ORTHO05D008758 6.1e-08 60.8 79 41.8
Nitab4.5_0001128g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 6.1e-08 60.8 71 47.9
Sopen06g004820 Solanum pennellii HOM05D007106 ORTHO05D007770 6.1e-08 60.8 78 43.6
PGSC0003DMG400019509 Solanum tuberosum HOM05D007106 ORTHO05D007770 7.9e-08 60.5 93 46.2
TPR.G9262 Trifolium pratense HOM05D007106 ORTHO05D007770 7.9e-08 60.5 90 47.8
Atru.chr9.252 Acer truncatum HOM05D007106 ORTHO05D007770 1.0e-07 60.1 79 48.1
Peaxi162Scf00274g00521 Petunia axillaris HOM05D007106 ORTHO05D007770 1.0e-07 60.1 95 46.3
Potri.015G062300 Populus trichocarpa HOM05D007106 ORTHO05D007770 1.4e-07 59.7 89 48.3
TWI15G1028 Tripterygium wilfordii HOM05D007106 ORTHO05D007770 1.4e-07 59.7 88 46.6
Aqoxy3G03422 Aquilegia oxysepala HOM05D007106 ORTHO05D007770 1.8e-07 59.3 90 42.2
SalBow7G1857 Salvia bowleyana HOM05D007106 ORTHO05D007770 1.8e-07 59.3 89 40.4
PGR083G1166 Punica granatum HOM05D007106 ORTHO05D007770 2.3e-07 58.9 86 45.3
Peaxi162Scf01256g00221 Petunia axillaris HOM05D007106 ORTHO05D007770 3.0e-07 58.5 86 45.3
Gohir.D07G070600 Gossypium hirsutum HOM05D007106 ORTHO05D007770 3.9e-07 58.2 84 51.2
Gorai.001G074500 Gossypium raimondii HOM05D007106 ORTHO05D007770 3.9e-07 58.2 84 51.2
Phvul.009G186700 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 5.1e-07 57.8 84 44.0
Solyc03g115950.3 Solanum lycopersicum HOM05D007106 ORTHO05D007770 6.7e-07 57.4 92 45.7
TAR622G1352 Trochodendron aralioides HOM05D007106 ORTHO05D007770 6.7e-07 57.4 81 49.4
vmacro16544 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 6.7e-07 57.4 89 47.2
CSS0008414 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 8.8e-07 57.0 91 47.3
CANSAT80G2807 Cannabis sativa HOM05D007106 ORTHO05D007770 8.8e-07 57.0 91 47.3
Hund02644 Selenicereus undatus HOM05D007106 ORTHO05D007770 8.8e-07 57.0 86 44.2
Nitab4.5_0008269g0020 Nicotiana tabacum HOM05D007106 ORTHO05D007770 1.1e-06 56.6 81 44.4
Glyma.05G026000 Glycine max HOM05D007106 ORTHO05D007770 1.5e-06 56.2 89 47.2
Lj4g0015417 Lotus japonicus HOM05D007106 ORTHO05D007770 1.5e-06 56.2 82 46.3
Medtr3g435530 Medicago truncatula HOM05D007106 ORTHO05D007770 1.5e-06 56.2 85 43.5
EL10Ac5g11028 Beta vulgaris HOM05D007106 ORTHO05D007770 3.3e-06 55.1 83 43.4
Gohir.A07G066100 Gossypium hirsutum HOM05D007106 ORTHO05D007770 3.3e-06 55.1 84 50.0
HanXRQChr05g0155941 Helianthus annuus HOM05D007106 ORTHO05D007770 5.7e-06 54.3 83 44.6
Lalb_Chr23g0273781 Lupinus albus HOM05D007106 ORTHO05D007770 5.7e-06 54.3 82 45.1
THA.LOC104812541 Tarenaya hassleriana HOM05D007106 ORTHO05D007770 7.4e-06 53.9 37 70.3
Oeu022764.1 Olea europaea HOM05D007106 ORTHO05D007770 9.7e-06 53.5 95 47.4
Phvul.003G189400 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 9.7e-06 53.5 88 46.6
Psat5g199960 Pisum sativum HOM05D007106 ORTHO05D007770 9.7e-06 53.5 85 42.4


User provided reference genes

Program Settings