Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 1.3e-105 386.3 187 100.0
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 1.8e-78 296.2 181 75.7
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 1.8e-78 296.2 181 75.7
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 2.3e-78 295.8 189 75.7
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 8.8e-78 293.9 188 78.2
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 6.3e-76 287.7 187 76.5
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 1.1e-75 287.0 187 73.8
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 3.1e-75 285.4 187 72.7
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 6.9e-75 284.3 187 75.4
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 7.7e-74 280.8 187 74.9
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 1.3e-73 280.0 188 72.3
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 1.4e-72 276.6 186 71.5
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 5.5e-72 274.6 188 73.9
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 3.6e-71 271.9 191 72.8
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 4.7e-71 271.6 182 72.0
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 4.7e-71 271.6 187 72.7
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 2.3e-70 269.2 185 69.2
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 6.7e-70 267.7 181 72.4
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 1.5e-69 266.5 189 72.0
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 2.6e-69 265.8 182 71.4
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 1.3e-68 263.5 187 70.1
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 1.7e-68 263.1 181 71.3
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 1.7e-68 263.1 186 73.1
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 2.8e-68 262.3 184 67.9
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 2.4e-67 259.2 176 71.0
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 2.4e-67 259.2 181 69.6
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 4.1e-67 258.5 183 72.1
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 5.3e-67 258.1 191 69.1
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 5.3e-67 258.1 183 71.6
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 9.1e-67 257.3 192 70.3
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 1.5e-66 256.5 187 69.5
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 1.5e-66 256.5 183 70.5
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 2.6e-66 255.8 192 70.3
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 3.5e-66 255.4 192 69.8
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 1.3e-65 253.4 192 69.8
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 2.9e-65 252.3 181 70.2
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 6.5e-65 251.1 181 69.1
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 1.1e-64 250.4 181 70.7
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 1.6e-63 246.5 185 65.4
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 2.1e-63 246.1 127 89.8
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 4.7e-63 245.0 139 82.7
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 1.4e-62 243.4 184 68.5
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 2.3e-62 242.7 190 65.8
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 1.5e-61 240.0 188 66.0
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 2.0e-61 239.6 186 67.7
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 4.4e-61 238.4 188 64.9
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 4.4e-61 238.4 188 63.8
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 5.7e-61 238.0 189 68.8
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 7.5e-61 237.7 188 65.4
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 9.7e-61 237.3 188 65.4
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 2.2e-60 236.1 181 68.0
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 2.2e-60 236.1 181 67.4
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 2.8e-60 235.7 181 67.4
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 3.7e-60 235.3 181 67.4
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 3.7e-60 235.3 189 64.0
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 1.1e-59 233.8 181 65.7
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 1.8e-59 233.0 188 62.8
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 1.8e-59 233.0 181 66.9
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 2.4e-59 232.6 181 65.2
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 7.0e-59 231.1 188 61.2
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 7.0e-59 231.1 181 66.9
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 1.6e-58 229.9 152 73.0
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 2.0e-58 229.6 195 64.6
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 5.9e-58 228.0 182 62.1
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 5.0e-57 224.9 182 60.4
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 8.5e-57 224.2 168 66.1
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 8.5e-57 224.2 189 61.9
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 1.1e-56 223.8 193 61.7
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 7.2e-56 221.1 127 85.0
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 4.7e-55 218.4 171 63.7
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 4.7e-55 218.4 189 60.8
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 6.1e-55 218.0 189 63.0
MBI02_g23462_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 1.4e-54 216.9 184 60.3
THA.LOC104808257 Tarenaya hassleriana HOM05D007067 ORTHO05D008864 1.4e-54 216.9 192 60.4
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 1.8e-54 216.5 187 62.6
ATR0564G121 Amborella trichopoda HOM05D007067 ORTHO05D008864 5.2e-54 214.9 201 57.2
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 5.2e-54 214.9 187 62.6
Peaxi162Scf00106g00037 Petunia axillaris HOM05D007067 ORTHO05D008864 1.5e-53 213.4 117 87.2
AL1G31200 Arabidopsis lyrata HOM05D007067 ORTHO05D008864 2.2e-52 209.5 188 59.6
BcaB07g31890 Brassica carinata HOM05D007067 ORTHO05D008864 2.8e-52 209.1 186 60.8
PGR044G1431 Punica granatum HOM05D007067 ORTHO05D008864 2.8e-52 209.1 187 61.0
AT1G18730 Arabidopsis thaliana HOM05D007067 ORTHO05D008864 3.7e-52 208.8 188 59.0
Thhalv10008902m.g Eutrema salsugineum HOM05D007067 ORTHO05D008864 1.1e-51 207.2 149 68.5
BcaC05g25773 Brassica carinata HOM05D007067 ORTHO05D008864 1.8e-51 206.5 130 75.4
C05p17040 Brassica napus HOM05D007067 ORTHO05D008864 1.8e-51 206.5 130 75.4
BolC5t30410H Brassica oleracea HOM05D007067 ORTHO05D008864 1.8e-51 206.5 130 75.4
Sp1g16740 Schrenkiella parvula HOM05D007067 ORTHO05D008864 1.8e-51 206.5 130 75.4
C08p43060 Brassica napus HOM05D007067 ORTHO05D008864 2.4e-51 206.1 130 75.4
Carub.0001s1838 Capsella rubella HOM05D007067 ORTHO05D008864 2.4e-51 206.1 130 75.4
CARHR019370 Cardamine hirsuta HOM05D007067 ORTHO05D008864 2.4e-51 206.1 188 59.0
A06p14840 Brassica napus HOM05D007067 ORTHO05D008864 4.1e-51 205.3 127 76.4
BraA06t24606Z Brassica rapa HOM05D007067 ORTHO05D008864 4.1e-51 205.3 127 76.4
BcaB03g14481 Brassica carinata HOM05D007067 ORTHO05D008864 9.1e-51 204.1 130 74.6
A09p59720 Brassica napus HOM05D007067 ORTHO05D008864 1.2e-50 203.8 130 74.6
BraA09t41348Z Brassica rapa HOM05D007067 ORTHO05D008864 1.2e-50 203.8 130 74.6
BolC8t51861H Brassica oleracea HOM05D007067 ORTHO05D008864 1.0e-49 200.7 133 73.7
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 2.7e-47 192.6 149 65.1
Aa31LG7G3520 Aethionema arabicum HOM05D007067 ORTHO05D008864 1.4e-46 190.3 115 73.9
Zm00001eb254450 Zea mays HOM05D007067 ORTHO05D008864 3.1e-43 179.1 184 53.3
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 7.7e-42 174.5 184 56.0
Os02g0744000 Oryza sativa ssp. japonica HOM05D007067 ORTHO05D008864 1.7e-41 173.3 174 52.9
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 1.7e-36 156.8 115 65.2
BcaC07g41296 Brassica carinata HOM05D007067 ORTHO05D008864 3.2e-35 152.5 97 70.1
Rhsim08G0153500 Rhododendron simsii HOM05D007067 ORTHO05D008864 7.0e-35 151.4 181 50.3
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 6.6e-33 144.8 124 60.5
SEGI_39094 Sequoiadendron giganteum HOM05D007067 ORTHO05D008864 1.6e-31 140.2 137 54.0
Manes.06G090801 Manihot esculenta HOM05D007067 ORTHO05D008864 2.6e-21 106.3 112 50.0
CBR_g30507 Chara braunii HOM05D007067 ORTHO05D008864 4.4e-21 105.5 85 58.8
Haze_07309 Corylus avellana HOM05D007067 ORTHO05D008864 4.4e-21 105.5 187 40.6
Mapoly0149s0008 Marchantia polymorpha HOM05D007067 ORTHO05D008864 3.7e-20 102.4 102 45.1
Pp3c16_3930 Physcomitrium patens HOM05D007067 ORTHO05D008864 3.7e-20 102.4 96 50.0
Ah.11g048310 Amaranthus hybridus HOM05D007067 ORTHO05D008864 8.6e-17 91.3 100 51.0
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.6e-09 64.7 52 71.2
Rhsim08G0168600 Rhododendron simsii HOM05D000306 ORTHO05D023263 1.1e-06 57.8 185 28.6


User provided reference genes

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