Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 4.6e-103 377.9 185 100.0
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.1e-80 303.5 167 81.4
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.4e-80 303.1 168 81.0
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 2.4e-80 302.4 167 82.6
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 7.1e-80 300.8 166 84.3
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.2e-79 300.1 168 82.7
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.2e-79 300.1 168 82.7
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 1.6e-79 299.7 166 81.3
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 1.6e-79 299.7 166 83.1
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 2.7e-79 298.9 166 81.3
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 4.6e-79 298.1 169 79.3
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 6.0e-79 297.7 174 78.7
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 7.8e-79 297.4 167 80.2
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 7.8e-79 297.4 167 80.8
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.0e-78 297.0 166 81.9
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.3e-78 296.6 168 79.2
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 2.3e-78 295.8 167 78.4
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 3.0e-78 295.4 176 79.5
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 5.1e-78 294.7 167 77.8
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 6.6e-78 294.3 167 80.2
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 8.7e-78 293.9 167 79.6
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 1.5e-77 293.1 173 76.9
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.5e-77 293.1 167 79.6
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 1.9e-77 292.7 167 78.4
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 4.3e-77 291.6 166 78.9
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 4.3e-77 291.6 169 78.1
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 5.6e-77 291.2 165 80.0
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 5.6e-77 291.2 166 79.5
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 5.6e-77 291.2 169 77.5
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 5.6e-77 291.2 166 78.3
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 7.3e-77 290.8 166 77.1
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 9.6e-77 290.4 166 78.3
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 9.6e-77 290.4 166 78.9
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 9.6e-77 290.4 167 77.2
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 9.6e-77 290.4 166 78.9
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.3e-76 290.0 166 79.5
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 2.1e-76 289.3 166 80.7
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 2.1e-76 289.3 166 78.9
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 3.6e-76 288.5 166 77.7
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 4.8e-76 288.1 166 77.7
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 6.2e-76 287.7 169 74.6
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 8.1e-76 287.3 166 77.7
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 1.1e-75 287.0 174 75.3
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.1e-75 287.0 200 68.5
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.1e-75 287.0 167 79.0
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.1e-75 287.0 167 79.0
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 1.4e-75 286.6 167 76.0
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 1.4e-75 286.6 167 75.4
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.8e-75 286.2 166 75.9
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.8e-75 286.2 166 77.1
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 1.8e-75 286.2 166 77.1
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 1.8e-75 286.2 162 82.1
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 1.8e-75 286.2 167 76.6
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 2.4e-75 285.8 168 75.0
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 2.4e-75 285.8 168 76.8
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 2.4e-75 285.8 168 76.8
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 5.3e-75 284.6 168 75.6
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 6.9e-75 284.3 168 74.4
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 6.9e-75 284.3 168 75.0
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 9.0e-75 283.9 169 76.3
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 9.0e-75 283.9 166 77.7
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 9.0e-75 283.9 167 77.8
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 1.2e-74 283.5 168 75.6
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 1.2e-74 283.5 169 76.3
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 1.2e-74 283.5 166 77.7
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.5e-74 283.1 168 75.6
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 1.5e-74 283.1 168 75.0
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 2.0e-74 282.7 166 77.1
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 2.0e-74 282.7 185 72.4
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 2.0e-74 282.7 166 75.3
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 2.0e-74 282.7 170 72.9
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 2.0e-74 282.7 166 78.3
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 2.0e-74 282.7 168 75.0
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 3.4e-74 282.0 168 75.6
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 4.5e-74 281.6 167 74.9
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 5.8e-74 281.2 169 74.6
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 5.8e-74 281.2 169 74.6
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 5.8e-74 281.2 169 74.6
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 7.6e-74 280.8 167 75.4
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 9.9e-74 280.4 166 77.1
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 9.9e-74 280.4 167 74.9
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 9.9e-74 280.4 174 73.0
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 1.3e-73 280.0 167 76.0
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.7e-73 279.6 157 79.6
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.7e-73 279.6 169 74.6
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.7e-73 279.6 175 75.4
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 2.2e-73 279.3 166 74.7
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 2.9e-73 278.9 171 71.9
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 4.9e-73 278.1 166 75.3
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 4.9e-73 278.1 166 74.1
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 4.9e-73 278.1 169 74.0
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 6.4e-73 277.7 181 70.7
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.1e-72 276.9 169 74.0
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 1.1e-72 276.9 166 75.3
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.4e-72 276.6 166 74.7
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 2.4e-72 275.8 166 74.7
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 5.4e-72 274.6 156 84.0
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 5.4e-72 274.6 169 72.2
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 7.1e-72 274.2 166 74.1
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 7.1e-72 274.2 152 82.9
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 9.3e-72 273.9 167 73.7
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 1.2e-71 273.5 166 74.1
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 2.1e-71 272.7 170 72.4
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 2.7e-71 272.3 167 73.7
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 2.7e-71 272.3 167 73.7
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 4.6e-71 271.6 166 73.5
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 7.9e-71 270.8 170 75.3
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 7.9e-71 270.8 168 72.6
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.0e-70 270.4 166 72.9
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 1.3e-70 270.0 170 74.7
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.3e-70 270.0 162 74.7
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 2.3e-70 269.2 158 78.5
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 3.0e-70 268.9 228 58.8
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 3.0e-70 268.9 166 71.1
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 3.9e-70 268.5 167 73.1
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 5.1e-70 268.1 166 74.1
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.1e-69 266.9 158 77.8
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 1.5e-69 266.5 167 70.7
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 9.6e-69 263.8 167 71.3
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 2.1e-68 262.7 175 68.6
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 2.8e-68 262.3 168 69.6
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 5.8e-66 254.6 150 78.7
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 5.8e-66 254.6 167 67.7
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.3e-65 253.4 167 66.5
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 1.4e-64 250.0 169 65.1
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.4e-64 250.0 172 69.8
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 1.8e-62 243.0 168 64.3
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 3.0e-62 242.3 173 64.7
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 7.4e-61 237.7 164 65.2
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 1.4e-59 233.4 164 64.6
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 3.1e-59 232.3 169 65.1
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 4.0e-59 231.9 160 63.1
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 6.5e-57 224.6 169 59.8
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 9.3e-56 220.7 167 61.7
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 6.3e-52 208.0 169 54.4
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 4.2e-48 195.3 109 76.1
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.1e-45 187.2 111 75.7
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.5e-45 186.8 110 74.5
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 1.9e-45 186.4 124 67.7
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.4e-43 180.3 107 75.7
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 3.1e-43 179.1 171 52.6
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 1.5e-42 176.8 186 46.2
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 4.5e-42 175.3 114 70.2
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 7.7e-42 174.5 100 78.0
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 1.7e-41 173.3 99 79.8
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 3.2e-40 169.1 100 77.0
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 2.6e-37 159.5 104 68.3
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 9.7e-37 157.5 85 85.9
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 1.4e-35 153.7 106 65.1
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 1.4e-35 153.7 106 65.1
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 1.8e-35 153.3 173 48.6
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-32 144.1 171 47.4
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 4.1e-27 125.6 157 37.6
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.2e-26 124.0 72 69.4
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 1.6e-26 123.6 136 52.9
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 2.6e-26 122.9 128 52.3
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.3e-20 104.0 63 73.0
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 7.0e-19 98.2 61 72.1
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 3.8e-17 92.4 183 27.9
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.5e-16 90.5 60 63.3
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 6.1e-15 85.1 60 61.7
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 1.8e-14 83.6 79 49.4
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 4.0e-14 82.4 61 63.9
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 1.6e-10 70.5 35 85.7
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 9.5e-08 61.2 48 62.5
PGSC0003DMG400005351 Solanum tuberosum HOM05D000190 ORTHO05D030681 6.8e-06 55.1 39 53.8


User provided reference genes

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