Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 2.5e-150 535.8 354 100.0
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 1.6e-67 260.8 360 59.4
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 5.9e-67 258.8 352 54.8
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 1.7e-66 257.3 359 62.7
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 2.9e-66 256.5 357 54.6
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 8.5e-66 255.0 361 61.2
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 1.5e-65 254.2 353 61.5
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 4.2e-65 252.7 355 62.8
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 9.4e-65 251.5 371 56.3
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 2.1e-64 250.4 373 57.4
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 2.3e-63 246.9 358 57.5
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 4.0e-63 246.1 355 56.3
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 5.2e-63 245.7 373 57.6
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 6.8e-63 245.4 353 58.1
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 8.8e-63 245.0 362 49.7
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 1.5e-62 244.2 352 46.9
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 2.0e-62 243.8 362 50.6
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 2.0e-62 243.8 356 58.1
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 4.4e-62 242.7 357 61.1
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 4.4e-62 242.7 352 45.7
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 7.5e-62 241.9 355 54.9
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 8.3e-61 238.4 352 54.3
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 1.1e-60 238.0 371 53.9
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 1.1e-60 238.0 358 58.4
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 1.8e-60 237.3 373 56.6
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 5.4e-60 235.7 354 56.5
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 5.4e-60 235.7 376 55.3
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 9.1e-60 235.0 360 55.3
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 7.7e-59 231.9 380 53.7
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 1.3e-58 231.1 358 57.5
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 2.3e-58 230.3 356 55.6
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 2.3e-58 230.3 384 56.5
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 8.6e-58 228.4 350 45.1
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 8.6e-58 228.4 357 58.3
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 1.9e-57 227.3 354 59.6
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 2.5e-57 226.9 371 44.2
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 5.5e-57 225.7 350 44.3
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 2.1e-56 223.8 378 54.8
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 6.1e-56 222.2 370 57.0
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 3.0e-55 219.9 358 55.3
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 3.0e-55 219.9 357 49.3
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 2.6e-54 216.9 383 51.4
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 4.4e-54 216.1 365 52.6
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 2.8e-53 213.4 355 53.2
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 2.8e-53 213.4 355 53.2
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 2.8e-53 213.4 365 56.4
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 3.7e-53 213.0 355 55.8
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 6.3e-53 212.2 353 55.0
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 1.1e-52 211.5 378 55.3
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.4e-52 211.1 352 56.0
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 2.4e-52 210.3 353 57.2
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 3.1e-52 209.9 386 53.4
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 3.1e-52 209.9 361 48.8
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 1.2e-51 208.0 353 58.6
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 1.6e-51 207.6 371 55.5
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.6e-51 207.6 352 52.3
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 2.7e-51 206.8 365 53.7
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 2.7e-51 206.8 388 50.3
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 2.7e-51 206.8 348 58.9
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 2.7e-51 206.8 367 52.0
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 4.5e-51 206.1 352 57.7
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 1.0e-50 204.9 370 55.9
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 2.9e-50 203.4 360 56.7
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 5.0e-50 202.6 374 53.2
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 1.5e-49 201.1 360 49.2
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 1.9e-49 200.7 363 46.6
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 1.9e-49 200.7 355 51.0
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 3.3e-49 199.9 355 51.0
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 2.1e-48 197.2 379 47.8
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 2.1e-48 197.2 394 48.7
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 1.8e-47 194.1 358 53.4
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 3.1e-47 193.4 176 59.1
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 3.1e-47 193.4 369 52.3
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 6.8e-47 192.2 398 51.3
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 7.5e-46 188.7 375 52.8
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 1.7e-45 187.6 361 50.4
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 3.7e-45 186.4 357 48.2
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 6.4e-45 185.7 357 47.1
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 6.4e-45 185.7 357 47.1
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 2.4e-44 183.7 359 49.9
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 1.6e-43 181.0 305 52.5
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 2.7e-43 180.3 354 42.4
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 1.7e-42 177.6 394 50.3
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 2.3e-42 177.2 358 46.4
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 1.9e-41 174.1 273 63.4
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 4.0e-39 166.4 358 49.4
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 8.9e-39 165.2 357 45.1
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 2.2e-37 160.6 383 49.3
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 7.8e-35 152.1 146 56.2
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 1.7e-34 151.0 193 46.1
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 5.1e-34 149.4 361 46.3
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 8.6e-34 148.7 345 48.4
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 1.5e-33 147.9 365 44.4
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 3.3e-33 146.7 156 51.9
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 4.3e-33 146.4 353 35.7
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 4.3e-33 146.4 288 58.3
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 2.8e-32 143.7 270 52.2
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 1.1e-31 141.7 142 50.0
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 2.4e-28 130.6 125 59.2
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 2.1e-27 127.5 122 55.7
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 5.1e-26 122.9 377 29.2
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 4.3e-25 119.8 499 31.7
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 5.6e-25 119.4 278 45.7
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 1.2e-24 118.2 123 51.2
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 2.6e-22 110.5 179 38.5
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 4.9e-21 106.3 91 68.1
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 1.6e-19 101.3 211 34.1
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 2.1e-19 100.9 101 49.5
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 7.8e-19 99.0 204 32.8
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 6.6e-18 95.9 139 41.0
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 2.5e-17 94.0 90 56.7
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 3.6e-16 90.1 93 53.8
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 1.1e-15 88.6 151 38.4
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 1.8e-15 87.8 86 62.8
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 3.1e-15 87.0 81 67.9
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 6.4e-13 79.3 79 64.6
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.2e-11 75.1 119 38.7
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 1.3e-08 65.1 40 70.0
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.6e-08 64.7 78 43.6
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 3.6e-08 63.5 105 34.3
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 4.8e-08 63.2 102 34.3
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 4.8e-08 63.2 102 35.3
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 4.8e-08 63.2 102 35.3
arahy.Tifrunner.gnm1.ann1.696ALD Arachis hypogaea HOM05D008215 ORTHO05D004366 2.4e-07 60.8 72 45.8
arahy.Tifrunner.gnm1.ann1.N3K4CS Arachis hypogaea HOM05D008215 ORTHO05D004366 3.1e-07 60.5 103 37.9
Oeu042970.1 Olea europaea HOM05D006566 ORTHO05D004366 9.0e-07 58.9 85 45.9
arahy.Tifrunner.gnm1.ann1.YEU6LJ Arachis hypogaea HOM05D006566 ORTHO05D004366 1.2e-06 58.5 59 49.2


User provided reference genes

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