Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 4.5e-186 654.4 330 100.0
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 5.4e-155 551.2 471 65.4
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 6.6e-121 438.0 344 63.4
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 2.1e-114 416.4 467 48.8
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 9.6e-112 407.5 461 47.9
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.1e-111 406.4 467 48.2
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 2.8e-111 406.0 457 47.7
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.1e-110 404.1 464 48.3
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.3e-108 397.1 467 47.1
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 1.7e-108 396.7 339 56.3
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 7.1e-107 391.3 393 51.9
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 4.6e-106 388.7 466 46.4
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 3.9e-105 385.6 432 49.1
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 6.7e-105 384.8 474 46.0
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 6.7e-105 384.8 457 47.3
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.1e-104 384.0 457 46.8
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.5e-104 383.6 457 46.8
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 4.3e-104 382.1 457 47.0
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 7.4e-104 381.3 467 45.0
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 2.8e-103 379.4 467 44.3
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 1.8e-102 376.7 472 44.5
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 3.1e-102 375.9 468 44.7
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 4.0e-102 375.6 467 44.3
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 6.9e-102 374.8 467 43.7
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 1.2e-101 374.0 461 45.3
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 5.8e-101 371.7 457 45.1
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.0e-100 370.9 451 46.3
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 1.3e-100 370.5 457 45.7
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 1.3e-100 370.5 457 44.6
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 1.7e-100 370.2 452 46.2
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 3.8e-100 369.0 452 45.6
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 3.8e-100 369.0 461 45.3
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 3.8e-100 369.0 457 44.2
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 4.9e-100 368.6 456 44.1
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 4.9e-100 368.6 459 45.5
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 1.4e-99 367.1 449 44.5
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 1.4e-99 367.1 466 44.6
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 1.9e-99 366.7 468 43.8
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.5e-99 366.3 470 44.5
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 5.5e-99 365.2 448 45.8
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 7.1e-99 364.8 433 46.4
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 9.3e-99 364.4 451 45.5
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 9.3e-99 364.4 452 45.1
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 1.2e-98 364.0 452 44.9
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 1.6e-98 363.6 459 44.2
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 4.6e-98 362.1 450 45.3
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 4.6e-98 362.1 464 42.5
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 6.0e-98 361.7 449 44.5
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 3.9e-97 359.0 453 43.7
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 1.1e-96 357.5 450 44.7
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 5.7e-96 355.1 456 43.9
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 5.7e-96 355.1 453 43.3
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 7.4e-96 354.8 455 43.7
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 7.4e-96 354.8 470 42.8
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 9.6e-96 354.4 456 43.4
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.6e-95 353.6 451 44.3
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 3.7e-95 352.4 450 44.0
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 4.8e-95 352.1 472 43.0
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.8e-94 350.1 461 42.3
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 1.2e-93 347.4 452 42.5
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.5e-93 347.1 452 43.1
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 3.4e-93 345.9 459 42.3
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 1.7e-92 343.6 459 42.0
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 2.2e-92 343.2 463 41.9
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 2.2e-92 343.2 470 43.4
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 2.2e-92 343.2 457 41.1
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 5.0e-92 342.0 463 41.9
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 5.0e-92 342.0 453 42.8
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 1.4e-91 340.5 475 41.9
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 5.5e-91 338.6 426 44.8
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 7.1e-91 338.2 453 41.7
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 7.9e-90 334.7 211 73.9
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 3.9e-89 332.4 461 40.6
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 1.5e-88 330.5 467 40.3
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 3.7e-87 325.9 447 41.8
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 3.7e-87 325.9 427 43.1
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 6.3e-87 325.1 441 42.2
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 1.5e-85 320.5 450 39.6
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 3.4e-85 319.3 441 42.4
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 4.5e-85 318.9 445 40.4
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.0e-84 317.8 223 68.2
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.1e-83 314.3 441 41.5
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.4e-83 313.9 444 41.0
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 1.6e-82 310.5 442 41.2
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.4e-81 307.4 430 41.4
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 1.8e-81 307.0 435 41.1
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 2.3e-81 306.6 209 68.9
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 3.9e-81 305.8 435 40.9
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 5.7e-80 302.0 204 64.7
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 1.3e-79 300.8 218 64.7
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 6.3e-79 298.5 208 69.7
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 1.4e-78 297.4 435 40.2
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 2.0e-77 293.5 435 39.8
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 7.7e-77 291.6 435 39.8
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 7.7e-77 291.6 435 39.8
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 2.2e-76 290.0 447 36.9
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 1.1e-75 287.7 384 43.5
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 1.9e-75 287.0 214 62.6
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 2.3e-73 280.0 454 36.6
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 8.8e-73 278.1 200 62.0
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.3e-71 274.2 168 74.4
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 3.7e-71 272.7 427 39.8
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 6.5e-68 261.9 209 56.0
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 4.2e-67 259.2 178 66.9
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 5.5e-67 258.8 209 56.9
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 9.4e-67 258.1 450 36.2
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 6.3e-63 245.4 304 43.8
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 1.4e-62 244.2 185 59.5
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 1.7e-60 237.3 201 54.7
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 1.5e-56 224.2 352 39.2
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 3.4e-56 223.0 213 48.8
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 3.8e-44 183.0 356 35.7
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 2.8e-42 176.8 117 70.1
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 3.2e-38 163.3 117 59.8
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 6.8e-33 145.6 362 31.2
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 8.3e-31 138.7 100 65.0
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 8.6e-28 128.6 100 65.0
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 4.3e-27 126.3 96 60.4
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 4.9e-23 112.8 100 57.0
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.1e-21 107.5 62 72.6
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 9.5e-19 98.6 150 38.0
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 1.1e-14 85.1 79 51.9
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 1.2e-10 71.6 73 52.1
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 4.4e-08 63.2 42 57.1


User provided reference genes

Program Settings