Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 4.7e-166 588.2 389 100.0
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 1.6e-65 254.2 393 45.8
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 4.7e-65 252.7 407 46.9
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 6.1e-65 252.3 397 44.1
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.4e-64 251.1 401 48.4
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 2.3e-64 250.4 399 46.4
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 3.0e-64 250.0 401 44.6
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 2.0e-63 247.3 405 43.5
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 1.7e-62 244.2 406 43.6
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 1.1e-61 241.5 410 43.2
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 2.4e-61 240.4 396 44.7
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 2.4e-61 240.4 406 43.6
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 5.3e-61 239.2 388 43.3
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 7.0e-61 238.8 393 43.3
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 9.1e-61 238.4 399 44.1
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 1.2e-60 238.0 412 43.0
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 4.5e-60 236.1 404 42.1
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 1.3e-59 234.6 401 45.6
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 5.0e-59 232.6 393 43.5
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 6.5e-59 232.3 383 48.0
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 8.5e-59 231.9 397 43.6
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.9e-58 230.7 386 45.9
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 5.5e-58 229.2 401 43.9
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 5.5e-58 229.2 404 43.8
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 5.5e-58 229.2 406 42.6
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 1.2e-57 228.0 402 42.0
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 1.2e-57 228.0 397 42.3
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 2.1e-57 227.3 386 47.9
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 3.6e-57 226.5 393 43.5
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 3.6e-57 226.5 393 46.1
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 2.3e-56 223.8 398 42.5
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 3.0e-56 223.4 390 43.1
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 5.2e-56 222.6 396 45.7
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 6.7e-56 222.2 395 41.3
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 6.7e-56 222.2 394 44.7
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.5e-55 221.1 393 42.5
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 9.7e-55 218.4 396 41.9
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 1.3e-54 218.0 390 44.9
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 2.8e-54 216.9 398 40.7
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 3.7e-54 216.5 393 43.0
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 8.2e-54 215.3 408 40.4
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 1.4e-53 214.5 398 42.7
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 5.3e-53 212.6 396 41.2
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 5.9e-52 209.1 435 41.6
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 5.9e-52 209.1 390 43.3
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 5.9e-52 209.1 394 40.6
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 1.3e-51 208.0 399 41.6
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 1.7e-51 207.6 395 41.5
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 2.2e-51 207.2 398 42.0
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 6.5e-51 205.7 390 47.4
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 8.5e-51 205.3 390 47.2
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 1.1e-50 204.9 414 42.0
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 1.5e-50 204.5 398 43.7
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 1.2e-49 201.4 400 43.5
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 1.2e-49 201.4 404 42.8
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 1.8e-48 197.6 401 41.4
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 2.3e-48 197.2 391 39.4
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.3e-48 197.2 426 37.8
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 7.5e-47 192.2 427 38.6
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 1.3e-46 191.4 401 40.6
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 2.8e-46 190.3 394 40.6
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 6.3e-46 189.1 406 41.6
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 2.4e-45 187.2 461 48.6
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 5.5e-42 176.0 396 39.9
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 1.1e-37 161.8 430 41.9
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 1.8e-37 161.0 320 40.9
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 2.4e-37 160.6 324 38.0
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 4.5e-36 156.4 410 34.6
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 5.9e-36 156.0 400 35.0
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 1.7e-35 154.5 337 37.7
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 8.6e-35 152.1 403 36.2
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 1.2e-33 148.3 404 34.7
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 1.6e-33 147.9 404 36.1
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 3.6e-33 146.7 402 35.8
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 3.6e-33 146.7 402 35.8
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 3.6e-33 146.7 412 34.2
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 3.6e-33 146.7 397 35.0
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 3.0e-32 143.7 400 34.8
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 3.0e-32 143.7 398 33.7
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 3.0e-32 143.7 400 34.8
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 4.0e-32 143.3 386 36.0
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 6.8e-32 142.5 418 34.2
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.5e-31 141.4 191 49.7
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 2.6e-31 140.6 326 37.4
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 3.4e-31 140.2 402 35.3
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.7e-30 137.9 395 46.6
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 8.3e-30 135.6 321 36.4
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 4.3e-26 123.2 391 33.0
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 5.6e-26 122.9 409 33.3
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 2.1e-25 120.9 395 32.7
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 3.1e-24 117.1 123 59.3
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 3.7e-22 110.2 318 34.0
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 1.1e-21 108.6 194 42.8
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.4e-21 108.2 402 29.4
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 2.4e-21 107.5 397 34.0
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 2.7e-20 104.0 405 29.4
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 2.3e-19 100.9 328 33.2
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 1.1e-18 98.6 194 41.2
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 3.3e-18 97.1 419 37.2
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 4.3e-18 96.7 90 64.4
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 4.3e-18 96.7 397 29.5
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 3.6e-17 93.6 186 39.8
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 1.8e-16 91.3 67 71.6
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 7.1e-13 79.3 128 38.3
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 9.2e-13 79.0 307 39.4
MSTRG.11411 Avicennia marina HOM05D006327 ORTHO05D007952 2.5e-10 70.9 114 41.2
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 4.0e-08 63.5 389 26.0
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 5.2e-08 63.2 45 71.1
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.2e-07 62.0 50 68.0
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.2e-07 62.0 50 68.0
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.5e-07 61.6 50 68.0
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.6e-07 60.8 50 70.0
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.4e-07 60.5 50 66.0
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.4e-07 60.1 56 57.1
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.4e-07 60.1 56 57.1
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 9.9e-07 58.9 45 64.4
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 2.2e-06 57.8 50 66.0
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.2e-06 57.8 45 66.7
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 6.4e-06 56.2 45 64.4


User provided reference genes

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