Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 1.8e-142 509.2 255 100.0
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 8.5e-84 314.3 252 66.3
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 4.0e-81 305.4 244 65.2
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 5.7e-80 301.6 236 68.6
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 9.8e-80 300.8 229 71.2
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 6.3e-79 298.1 212 71.7
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 1.4e-78 297.0 212 71.7
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 1.8e-78 296.6 177 80.8
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 2.4e-78 296.2 221 70.1
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 3.1e-78 295.8 243 64.6
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 4.1e-78 295.4 196 75.5
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 5.4e-78 295.0 245 64.5
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 9.1e-78 294.3 189 77.2
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 1.2e-77 293.9 197 75.6
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 1.2e-77 293.9 177 79.7
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 2.0e-77 293.1 197 75.6
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 1.0e-76 290.8 191 78.0
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 1.3e-76 290.4 209 69.4
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 1.7e-76 290.0 204 72.1
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.7e-76 290.0 196 73.5
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 2.9e-76 289.3 193 74.1
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 3.8e-76 288.9 203 69.5
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 1.1e-75 287.3 196 73.5
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 1.9e-75 286.6 204 71.6
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 2.5e-75 286.2 190 75.3
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 5.5e-75 285.0 245 60.8
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.2e-74 283.9 176 77.8
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 2.1e-74 283.1 176 78.4
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 2.8e-74 282.7 255 61.2
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 2.8e-74 282.7 190 73.7
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 3.6e-74 282.3 176 76.7
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 4.7e-74 282.0 178 78.1
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 6.1e-74 281.6 191 70.2
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 1.0e-73 280.8 170 77.1
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 1.8e-73 280.0 179 74.9
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 1.8e-73 280.0 207 70.0
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 5.2e-73 278.5 193 72.5
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 6.8e-73 278.1 216 65.7
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 8.9e-73 277.7 236 62.7
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 2.6e-72 276.2 190 70.5
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 5.7e-72 275.0 191 74.9
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 5.7e-72 275.0 192 71.4
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 1.3e-71 273.9 230 60.4
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.7e-71 273.5 192 70.8
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 1.7e-71 273.5 183 72.7
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 8.3e-71 271.2 196 67.9
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 8.3e-71 271.2 197 72.6
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 8.3e-71 271.2 177 71.8
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 8.3e-71 271.2 201 65.7
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 1.1e-70 270.8 191 73.3
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 1.8e-70 270.0 201 65.7
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.8e-70 270.0 192 70.3
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 3.2e-70 269.2 214 65.0
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 4.1e-70 268.9 189 69.3
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 7.0e-70 268.1 231 59.7
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 7.0e-70 268.1 178 74.2
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 1.6e-69 266.9 246 60.6
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 2.7e-69 266.2 182 72.0
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 3.5e-69 265.8 178 71.9
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 4.5e-69 265.4 201 64.2
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 5.9e-69 265.0 177 70.6
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 5.9e-69 265.0 201 64.2
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 5.9e-69 265.0 251 59.4
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 7.8e-69 264.6 186 68.8
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 1.0e-68 264.2 201 64.2
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 1.0e-68 264.2 201 64.2
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 1.0e-68 264.2 190 68.9
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 1.3e-68 263.8 207 68.1
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 1.7e-68 263.5 202 64.9
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 1.7e-68 263.5 216 62.5
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 1.7e-68 263.5 184 68.5
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 1.7e-68 263.5 209 66.5
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 1.7e-68 263.5 251 57.4
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 2.3e-68 263.1 191 69.6
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 5.0e-68 261.9 191 72.3
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 1.5e-67 260.4 216 62.0
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 1.5e-67 260.4 162 77.8
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 1.2e-66 257.3 193 65.3
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 1.6e-66 256.9 185 68.6
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 1.6e-66 256.9 187 66.3
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 1.6e-66 256.9 185 68.6
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 2.1e-66 256.5 197 65.5
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 4.7e-66 255.4 187 67.9
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 8.0e-66 254.6 187 66.3
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 8.0e-66 254.6 187 66.3
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 1.0e-65 254.2 190 68.9
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 1.0e-65 254.2 170 71.2
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 1.4e-65 253.8 190 65.3
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 1.8e-65 253.4 189 63.5
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 2.3e-65 253.1 187 66.8
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 2.3e-65 253.1 187 66.3
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 3.1e-65 252.7 189 66.1
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 4.0e-65 252.3 170 67.6
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 8.9e-65 251.1 176 71.0
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 2.6e-64 249.6 177 67.8
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 3.4e-64 249.2 169 71.0
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 2.4e-62 243.0 194 62.9
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 2.0e-61 240.0 222 58.1
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 3.5e-61 239.2 175 66.9
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 1.0e-60 237.7 175 66.3
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 2.3e-60 236.5 174 67.2
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 3.9e-60 235.7 213 59.2
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 5.6e-59 231.9 217 60.8
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 7.3e-59 231.5 144 77.1
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 1.2e-58 230.7 202 56.9
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 2.8e-58 229.6 154 70.1
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 1.1e-57 227.6 158 71.5
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 2.6e-56 223.0 203 56.7
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 7.5e-56 221.5 190 61.1
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 5.4e-54 215.3 184 61.4
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 6.0e-53 211.8 125 83.2
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 1.2e-50 204.1 130 76.2
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 2.3e-49 199.9 140 71.4
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 4.4e-48 195.7 160 58.1
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 2.9e-47 193.0 166 61.4
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 1.4e-46 190.7 152 65.8
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 2.4e-46 189.9 133 66.9
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 2.4e-46 189.9 193 51.3
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 6.0e-45 185.3 151 60.3
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 6.0e-45 185.3 151 60.3
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 7.8e-45 184.9 147 59.2
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 2.1e-37 160.2 95 80.0
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 4.3e-35 152.5 142 54.9
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 2.6e-32 143.3 146 55.5
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 2.9e-31 139.8 82 80.5
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 7.9e-29 131.7 153 55.6
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 1.6e-26 124.0 77 75.3
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 5.8e-24 115.5 107 60.7
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 3.0e-20 103.2 102 54.9
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 7.1e-14 82.0 50 72.0
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 1.4e-09 67.8 48 64.6
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 6.9e-09 65.5 36 72.2
Cre11.g467679 Chlamydomonas reinhardtii HOM05D019738 ORTHO05D022279 5.8e-08 62.4 151 29.8
Cfa005086 Carpinus fangiana HOM05D005796 ORTHO05D007054 1.4e-06 57.8 131 35.9


User provided reference genes

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