Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g15570 Coffea canephora HOM05D006331 ORTHO05D008043 1.9e-40 168.7 85 100.0
Cc07_g19500 Coffea canephora HOM05D006331 ORTHO05D008043 1.6e-15 85.9 47 93.6
Manes.10G075600 Manihot esculenta HOM05D006331 ORTHO05D008043 5.5e-11 70.9 47 74.5
Solyc03g043750.3 Solanum lycopersicum HOM05D006331 ORTHO05D008043 6.1e-10 67.4 47 72.3
Sopen03g007600 Solanum pennellii HOM05D006331 ORTHO05D008043 6.1e-10 67.4 47 72.3
PGSC0003DMG400016687 Solanum tuberosum HOM05D006331 ORTHO05D008043 6.1e-10 67.4 47 72.3
Dinv30329 Davidia involucrata HOM05D006331 ORTHO05D008043 7.9e-10 67.0 47 70.2
Nitab4.5_0002100g0110 Nicotiana tabacum HOM05D006331 ORTHO05D008043 7.9e-10 67.0 47 72.3
SGA_v2.0_scaffold143G35715 Striga asiatica HOM05D006331 ORTHO05D008043 7.9e-10 67.0 47 72.3
COL.COLO4_12111 Corchorus olitorius HOM05D006331 ORTHO05D008043 1.0e-09 66.6 47 72.3
MSTRG.3598 Avicennia marina HOM05D006331 ORTHO05D008043 1.8e-09 65.9 47 70.2
Eucgr.H05078 Eucalyptus grandis HOM05D006331 ORTHO05D008043 2.3e-09 65.5 47 72.3
CAN.G11.28 Capsicum annuum HOM05D006331 ORTHO05D008043 3.0e-09 65.1 47 70.2
Thecc.01G141800 Theobroma cacao HOM05D006331 ORTHO05D008043 3.0e-09 65.1 47 72.3
CiPaw.03G115600 Carya illinoinensis HOM05D006331 ORTHO05D008043 3.9e-09 64.7 47 70.2
Oeu050103.1 Olea europaea HOM05D006331 ORTHO05D008043 3.9e-09 64.7 47 72.3
Prupe.5G076700 Prunus persica HOM05D006331 ORTHO05D008043 3.9e-09 64.7 47 70.2
Atru.BG.96.p Acer truncatum HOM05D006331 ORTHO05D008043 6.7e-09 63.9 47 70.2
Atru.chr4.1109 Acer truncatum HOM05D006331 ORTHO05D008043 6.7e-09 63.9 47 70.2
Cpa.g.sc37.37 Carica papaya HOM05D006331 ORTHO05D008043 6.7e-09 63.9 47 70.2
Nitab4.5_0004338g0140 Nicotiana tabacum HOM05D006331 ORTHO05D008043 6.7e-09 63.9 47 66.0
Potri.007G098700 Populus trichocarpa HOM05D006331 ORTHO05D008043 8.8e-09 63.5 47 68.1
TAR376G0453 Trochodendron aralioides HOM05D006331 ORTHO05D008043 8.8e-09 63.5 48 72.9
Gohir.A12G001900 Gossypium hirsutum HOM05D006331 ORTHO05D008043 1.1e-08 63.2 47 70.2
Gohir.D12G001700 Gossypium hirsutum HOM05D006331 ORTHO05D008043 1.1e-08 63.2 47 70.2
Hma1.2p1_2302F.1_g319320 Hydrangea macrophylla HOM05D006331 ORTHO05D008043 1.1e-08 63.2 58 60.3
PGR102G1699 Punica granatum HOM05D006331 ORTHO05D008043 1.1e-08 63.2 47 68.1
Duzib264G0015 Durio zibethinus HOM05D006331 ORTHO05D008043 1.5e-08 62.8 46 69.6
Phvul.002G275600 Phaseolus vulgaris HOM05D006331 ORTHO05D008043 1.9e-08 62.4 47 66.0
SalBow7G0499 Salvia bowleyana HOM05D006331 ORTHO05D008043 1.9e-08 62.4 47 68.1
CSS0012546 Camellia sinensis var. sinensis HOM05D006331 ORTHO05D008043 2.5e-08 62.0 47 66.0
CSS0035477 Camellia sinensis var. sinensis HOM05D006331 ORTHO05D008043 2.5e-08 62.0 47 66.0
CANSAT01G2335 Cannabis sativa HOM05D006331 ORTHO05D008043 2.5e-08 62.0 46 65.2
Ciclev10000807m.g Citrus clementina HOM05D006331 ORTHO05D008043 2.5e-08 62.0 46 69.6
Actinidia16518 Actinidia chinensis HOM05D006331 ORTHO05D008043 3.3e-08 61.6 58 55.2
vmacro11024 Vaccinium macrocarpon HOM05D006331 ORTHO05D008043 3.3e-08 61.6 46 69.6
GSVIVG01022367001 Vitis vinifera HOM05D006331 ORTHO05D008043 4.3e-08 61.2 47 66.0
arahy.Tifrunner.gnm1.ann1.9C2QS4 Arachis hypogaea HOM05D006331 ORTHO05D008043 5.7e-08 60.8 46 67.4
arahy.Tifrunner.gnm1.ann1.GTTL2Q Arachis hypogaea HOM05D006331 ORTHO05D008043 5.7e-08 60.8 46 67.4
QL10p040044 Quercus lobata HOM05D006331 ORTHO05D008043 5.7e-08 60.8 47 66.0
Sabra07G0082300 Salix brachista HOM05D006331 ORTHO05D008043 5.7e-08 60.8 47 63.8
Gorai.008G001100 Gossypium raimondii HOM05D006331 ORTHO05D008043 9.7e-08 60.1 47 68.1
MD04G1081700 Malus domestica HOM05D006331 ORTHO05D008043 9.7e-08 60.1 47 63.8
Nn5g28340 Nelumbo nucifera HOM05D006331 ORTHO05D008043 9.7e-08 60.1 48 68.8
VMungo0251G2607 Vigna mungo HOM05D006331 ORTHO05D008043 9.7e-08 60.1 47 63.8
Lj4A830T32 Lonicera japonica HOM05D006331 ORTHO05D008043 1.3e-07 59.7 47 63.8
Lj4g0002141 Lotus japonicus HOM05D006331 ORTHO05D008043 1.3e-07 59.7 47 59.6
TPR.G37385 Trifolium pratense HOM05D006331 ORTHO05D008043 1.3e-07 59.7 47 59.6
TWI75G0452 Tripterygium wilfordii HOM05D006331 ORTHO05D008043 1.3e-07 59.7 47 66.0
Cfa002168 Carpinus fangiana HOM05D006331 ORTHO05D008043 1.7e-07 59.3 47 66.0
Cfa002176 Carpinus fangiana HOM05D006331 ORTHO05D008043 1.7e-07 59.3 47 66.0
Ca_17611_v3 Cicer arietinum L. HOM05D006331 ORTHO05D008043 1.7e-07 59.3 47 61.7
MELO3C008946.2 Cucumis melo HOM05D006331 ORTHO05D008043 1.7e-07 59.3 47 66.0
FAN13G1065 Fragaria x ananassa HOM05D006331 ORTHO05D008043 1.7e-07 59.3 47 63.8
Haze_25343 Corylus avellana HOM05D006331 ORTHO05D008043 2.2e-07 58.9 47 66.0
Psat7g043600 Pisum sativum HOM05D006331 ORTHO05D008043 2.2e-07 58.9 47 61.7
FAN04G0432 Fragaria x ananassa HOM05D006331 ORTHO05D008043 2.8e-07 58.5 47 63.8
SalBow8G4137 Salvia bowleyana HOM05D006331 ORTHO05D008043 2.8e-07 58.5 47 63.8
CsaV3_4G030790 Cucumis sativus L. HOM05D006331 ORTHO05D008043 3.7e-07 58.2 47 63.8
Migut.L00271 Erythranthe guttata HOM05D006331 ORTHO05D008043 3.7e-07 58.2 46 63.0
Medtr8g094730 Medicago truncatula HOM05D006331 ORTHO05D008043 3.7e-07 58.2 47 59.6
PSO170G3731 Papaver somniferum HOM05D006331 ORTHO05D008043 3.7e-07 58.2 47 57.4
PSO528G0231 Papaver somniferum HOM05D006331 ORTHO05D008043 3.7e-07 58.2 47 57.4
Rhsim02G0171900 Rhododendron simsii HOM05D006331 ORTHO05D008043 3.7e-07 58.2 46 63.0
ClCG04G001810 Citrullus lanatus HOM05D006331 ORTHO05D008043 4.8e-07 57.8 57 56.1
Migut.L00582 Erythranthe guttata HOM05D006331 ORTHO05D008043 4.8e-07 57.8 46 63.0
Glyma.05G195400 Glycine max HOM05D006331 ORTHO05D008043 4.8e-07 57.8 47 61.7
Lalb_Chr12g0202951 Lupinus albus HOM05D006331 ORTHO05D008043 4.8e-07 57.8 47 61.7
RcHm_v2.0_Chr7g0202111 Rosa chinensis HOM05D006331 ORTHO05D008043 6.3e-07 57.4 47 61.7
FvH4_5g00410 Fragaria vesca HOM05D006331 ORTHO05D008043 8.2e-07 57.0 46 63.0
FAN18G4276 Fragaria x ananassa HOM05D006331 ORTHO05D008043 8.2e-07 57.0 46 63.0
MBI06_g01071_MAGBIO Magnolia biondii HOM05D006331 ORTHO05D008043 8.2e-07 57.0 48 66.7
HanXRQChr01g0017771 Helianthus annuus HOM05D006331 ORTHO05D008043 1.4e-06 56.2 46 58.7
Oeu042319.1 Olea europaea HOM05D006331 ORTHO05D008043 1.4e-06 56.2 47 61.7
Ah.06g188590 Amaranthus hybridus HOM05D006331 ORTHO05D008043 1.8e-06 55.8 46 58.7
ECA248G1760 Erigeron canadensis HOM05D006331 ORTHO05D008043 2.4e-06 55.5 46 58.7
Lsat_1_v5_gn_1_81581 Lactuca sativa HOM05D006331 ORTHO05D008043 3.1e-06 55.1 62 46.8
Glyma.08G002967 Glycine max HOM05D006331 ORTHO05D008043 5.3e-06 54.3 47 57.4
HPP92_013148 Vanilla planifolia HOM05D006331 ORTHO05D008043 5.3e-06 54.3 48 60.4
AUR62000551 Chenopodium quinoa HOM05D006331 ORTHO05D008043 6.9e-06 53.9 46 58.7
Sed0028082 Sechium edule HOM05D006331 ORTHO05D008043 6.9e-06 53.9 47 59.6


User provided reference genes

Program Settings