Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 1.1e-83 313.5 191 100.0
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 2.3e-49 199.5 156 81.4
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 6.7e-49 198.0 165 77.6
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 8.7e-49 197.6 156 81.4
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 8.7e-49 197.6 156 81.4
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 8.7e-49 197.6 193 69.9
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 8.7e-49 197.6 195 69.2
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 8.7e-49 197.6 187 70.1
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 1.1e-48 197.2 156 81.4
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 1.5e-48 196.8 156 81.4
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 1.9e-48 196.4 190 69.5
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 4.3e-48 195.3 192 68.2
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 7.4e-48 194.5 192 68.2
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 9.6e-48 194.1 197 68.5
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 1.3e-47 193.7 194 70.1
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 1.6e-47 193.4 198 68.2
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 2.1e-47 193.0 196 66.3
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 2.1e-47 193.0 156 81.4
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 2.8e-47 192.6 156 81.4
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 4.8e-47 191.8 192 66.7
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 4.8e-47 191.8 195 69.7
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 8.2e-47 191.0 192 67.2
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 8.2e-47 191.0 204 65.2
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 1.1e-46 190.7 154 80.5
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 1.4e-46 190.3 155 80.6
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 1.8e-46 189.9 203 66.0
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 1.8e-46 189.9 170 73.5
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 1.8e-46 189.9 170 73.5
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 2.4e-46 189.5 156 78.2
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 2.4e-46 189.5 194 68.0
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 2.4e-46 189.5 178 69.7
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 3.1e-46 189.1 199 65.8
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 4.1e-46 188.7 192 67.7
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 9.0e-46 187.6 193 65.3
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 9.0e-46 187.6 198 66.7
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 9.0e-46 187.6 190 68.9
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.2e-45 187.2 148 82.4
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 1.5e-45 186.8 181 71.3
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 2.0e-45 186.4 202 65.8
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 3.4e-45 185.7 178 69.7
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 4.5e-45 185.3 205 64.9
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 4.5e-45 185.3 195 67.2
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 5.9e-45 184.9 156 77.6
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 1.0e-44 184.1 156 76.3
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 1.3e-44 183.7 194 66.5
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 1.7e-44 183.3 146 83.6
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 2.2e-44 183.0 160 73.8
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 3.8e-44 182.2 166 71.7
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 6.5e-44 181.4 149 79.9
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 6.5e-44 181.4 182 68.1
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 8.5e-44 181.0 197 65.5
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.9e-43 179.9 192 64.6
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 1.9e-43 179.9 154 76.6
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 1.9e-43 179.9 191 65.4
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 3.2e-43 179.1 155 76.8
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 4.2e-43 178.7 158 72.8
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 5.5e-43 178.3 186 65.6
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 7.2e-43 177.9 197 66.5
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 9.3e-43 177.6 156 74.4
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 1.6e-42 176.8 156 75.0
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 1.6e-42 176.8 207 63.3
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 2.1e-42 176.4 195 64.1
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 3.6e-42 175.6 202 61.9
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 4.6e-42 175.3 176 66.5
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 1.3e-41 173.7 203 61.1
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 2.3e-41 172.9 192 61.5
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 3.9e-41 172.2 176 66.5
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 3.9e-41 172.2 203 60.6
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 6.7e-41 171.4 194 64.4
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 6.7e-41 171.4 191 62.8
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 8.7e-41 171.0 154 73.4
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 1.5e-40 170.2 156 71.2
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 1.5e-40 170.2 156 71.2
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.9e-40 169.9 203 60.6
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 2.5e-40 169.5 189 59.8
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 5.7e-40 168.3 156 72.4
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 7.4e-40 167.9 156 69.9
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 9.7e-40 167.5 156 68.6
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 9.7e-40 167.5 196 61.7
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 9.7e-40 167.5 182 65.4
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 9.7e-40 167.5 182 65.4
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 9.7e-40 167.5 150 74.0
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 1.3e-39 167.2 156 69.9
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 1.3e-39 167.2 156 69.9
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 1.3e-39 167.2 156 69.9
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 1.3e-39 167.2 149 74.5
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 1.6e-39 166.8 156 70.5
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 1.6e-39 166.8 202 59.9
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 1.6e-39 166.8 156 70.5
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 2.2e-39 166.4 175 64.0
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 2.8e-39 166.0 148 73.6
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 3.7e-39 165.6 156 70.5
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 4.8e-39 165.2 156 68.6
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 6.3e-39 164.9 200 62.5
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 1.1e-38 164.1 194 57.2
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 1.4e-38 163.7 155 69.7
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 5.3e-38 161.8 155 70.3
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 2.6e-37 159.5 198 60.1
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 5.9e-37 158.3 170 64.7
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 7.7e-37 157.9 156 66.7
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 2.2e-36 156.4 185 58.9
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 3.6e-34 149.1 146 71.9
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 1.0e-33 147.5 177 58.8
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 4.8e-31 138.7 197 57.4
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 2.0e-29 133.3 199 54.3
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 3.4e-29 132.5 156 57.7
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 8.8e-25 117.9 202 49.0
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 3.7e-23 112.5 152 53.9
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.4e-22 110.5 68 75.0
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 5.9e-21 105.1 156 53.2
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 6.5e-20 101.7 148 54.7
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 8.5e-20 101.3 131 51.9
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 9.4e-19 97.8 153 52.9
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 6.7e-17 91.7 153 50.3
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.6e-16 89.7 103 64.1
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 1.1e-14 84.3 140 52.1
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 2.4e-14 83.2 53 67.9
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 3.1e-14 82.8 117 49.6
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 5.9e-13 78.6 155 45.2
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 2.3e-09 66.6 112 47.3


User provided reference genes

Program Settings