Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 4.6e-38 160.6 75 100.0
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 4.8e-35 150.6 75 94.7
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 8.2e-35 149.8 75 92.0
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 2.4e-34 148.3 75 93.3
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 3.0e-29 131.3 63 95.2
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 5.9e-25 117.1 63 82.5
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 5.9e-25 117.1 63 81.0
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 5.9e-25 117.1 63 82.5
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.2e-24 115.2 63 79.4
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 2.2e-24 115.2 59 91.5
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 2.2e-24 115.2 63 81.0
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.2e-24 115.2 63 82.5
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 2.2e-24 115.2 63 82.5
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 2.9e-24 114.8 63 81.0
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 6.5e-24 113.6 63 81.0
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 6.5e-24 113.6 63 81.0
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 1.4e-23 112.5 63 79.4
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.4e-23 112.5 63 77.8
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.4e-23 112.5 63 79.4
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 1.4e-23 112.5 63 79.4
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 1.4e-23 112.5 63 79.4
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 1.4e-23 112.5 63 79.4
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 1.9e-23 112.1 63 77.8
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 1.9e-23 112.1 63 77.8
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 1.9e-23 112.1 63 77.8
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 1.9e-23 112.1 63 79.4
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 2.5e-23 111.7 63 77.8
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 2.5e-23 111.7 63 79.4
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 2.5e-23 111.7 63 79.4
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.5e-23 111.7 63 81.0
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.5e-23 111.7 63 81.0
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 2.5e-23 111.7 63 77.8
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 3.2e-23 111.3 63 79.4
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 3.2e-23 111.3 63 77.8
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 3.2e-23 111.3 63 77.8
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 3.2e-23 111.3 62 77.4
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 3.2e-23 111.3 62 77.4
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 3.2e-23 111.3 63 77.8
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 3.2e-23 111.3 63 74.6
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 3.2e-23 111.3 63 76.2
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 3.2e-23 111.3 63 76.2
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 4.2e-23 110.9 63 79.4
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 5.5e-23 110.5 63 76.2
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 5.5e-23 110.5 63 81.0
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 5.5e-23 110.5 63 77.8
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 5.5e-23 110.5 63 76.2
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 7.2e-23 110.2 63 76.2
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 7.2e-23 110.2 63 74.6
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 7.2e-23 110.2 63 81.0
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 9.4e-23 109.8 63 76.2
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 9.4e-23 109.8 63 77.8
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 9.4e-23 109.8 63 77.8
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 9.4e-23 109.8 63 77.8
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 1.2e-22 109.4 63 77.8
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.2e-22 109.4 63 77.8
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 1.2e-22 109.4 63 77.8
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.6e-22 109.0 63 76.2
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.6e-22 109.0 63 79.4
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.6e-22 109.0 63 77.8
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 2.1e-22 108.6 63 74.6
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 2.1e-22 108.6 66 75.8
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 2.1e-22 108.6 63 74.6
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 2.1e-22 108.6 63 79.4
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 2.7e-22 108.2 63 76.2
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 2.7e-22 108.2 63 79.4
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 2.7e-22 108.2 63 76.2
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.6e-22 107.8 63 74.6
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.6e-22 107.8 63 77.8
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 3.6e-22 107.8 63 76.2
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 3.6e-22 107.8 63 76.2
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 3.6e-22 107.8 63 77.8
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 3.6e-22 107.8 61 82.0
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 4.7e-22 107.5 64 75.0
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 4.7e-22 107.5 63 79.4
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 4.7e-22 107.5 63 76.2
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 4.7e-22 107.5 63 76.2
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 6.1e-22 107.1 63 76.2
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 8.0e-22 106.7 63 76.2
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 8.0e-22 106.7 63 76.2
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 8.0e-22 106.7 63 76.2
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 8.0e-22 106.7 63 76.2
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 8.0e-22 106.7 63 76.2
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 1.0e-21 106.3 63 76.2
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.0e-21 106.3 64 78.1
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 1.0e-21 106.3 63 77.8
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 1.4e-21 105.9 63 74.6
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 1.8e-21 105.5 66 72.7
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.8e-21 105.5 63 74.6
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 2.3e-21 105.1 63 76.2
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 2.3e-21 105.1 63 76.2
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 2.3e-21 105.1 63 76.2
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 3.0e-21 104.8 63 74.6
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 3.0e-21 104.8 63 76.2
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 3.0e-21 104.8 62 72.6
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 3.9e-21 104.4 63 71.4
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 5.2e-21 104.0 63 74.6
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 6.7e-21 103.6 63 76.2
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 6.7e-21 103.6 63 71.4
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.7e-21 103.6 63 76.2
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.7e-21 103.6 63 76.2
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.7e-21 103.6 63 76.2
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 6.7e-21 103.6 63 71.4
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 8.8e-21 103.2 63 73.0
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 8.8e-21 103.2 63 74.6
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.1e-20 102.8 63 74.6
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 1.1e-20 102.8 63 74.6
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.5e-20 102.4 63 73.0
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 1.5e-20 102.4 66 66.7
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 2.0e-20 102.1 63 71.4
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.6e-20 101.7 63 71.4
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 2.6e-20 101.7 63 73.0
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 3.3e-20 101.3 63 74.6
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 3.3e-20 101.3 63 74.6
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 3.3e-20 101.3 63 74.6
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 3.3e-20 101.3 63 73.0
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 4.4e-20 100.9 63 71.4
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 5.7e-20 100.5 63 71.4
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 2.2e-19 98.6 62 71.0
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 2.8e-19 98.2 63 69.8
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 3.7e-19 97.8 57 73.7
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 8.2e-19 96.7 63 68.3
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 8.2e-19 96.7 63 68.3
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 7.0e-18 93.6 62 69.4
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 1.6e-17 92.4 63 68.3
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.0e-17 92.0 62 69.4
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 2.6e-17 91.7 63 55.6
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.6e-17 91.7 85 54.1
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 3.5e-17 91.3 63 68.3
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 5.9e-17 90.5 55 74.5
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 5.9e-17 90.5 62 69.4
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.0e-16 89.7 63 65.1
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 1.3e-16 89.4 63 66.7
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 1.3e-16 89.4 64 65.6
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 2.9e-16 88.2 63 63.5
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 1.5e-15 85.9 62 62.9
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 2.5e-15 85.1 60 66.7
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 3.2e-15 84.7 63 61.9
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.2e-15 84.7 63 61.9
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 7.2e-15 83.6 63 58.7
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 7.2e-15 83.6 63 58.7
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.6e-14 81.3 63 60.3
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 3.6e-14 81.3 63 60.3
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.7e-11 71.2 41 78.0
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 4.7e-06 54.3 37 62.2


User provided reference genes

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