Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.5e-71 272.7 138 100.0
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 5.9e-47 191.0 100 99.0
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 7.2e-45 184.1 109 86.2
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 6.1e-44 181.0 99 91.9
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.0e-43 180.3 100 89.0
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.4e-43 179.9 99 93.9
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.8e-43 179.5 100 93.0
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.8e-43 179.5 100 93.0
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.8e-43 179.5 100 91.0
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 1.8e-43 179.5 100 91.0
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.3e-43 179.1 100 91.0
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 2.3e-43 179.1 99 91.9
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.0e-43 178.7 100 91.0
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.0e-43 178.7 100 91.0
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 3.0e-43 178.7 99 90.9
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 3.0e-43 178.7 100 90.0
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 4.0e-43 178.3 99 91.9
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 4.0e-43 178.3 100 90.0
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 5.2e-43 177.9 100 88.0
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.8e-43 177.6 99 89.9
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 6.8e-43 177.6 100 90.0
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 8.8e-43 177.2 100 89.0
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 8.8e-43 177.2 117 78.6
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 8.8e-43 177.2 99 87.9
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.2e-42 176.8 101 88.1
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.2e-42 176.8 98 89.8
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 1.2e-42 176.8 99 89.9
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.5e-42 176.4 99 88.9
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.5e-42 176.4 100 88.0
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.5e-42 176.4 100 89.0
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.0e-42 176.0 100 89.0
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.6e-42 175.6 99 89.9
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 2.6e-42 175.6 99 89.9
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.6e-42 175.6 99 85.9
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 3.4e-42 175.3 100 88.0
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 3.4e-42 175.3 100 87.0
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 3.4e-42 175.3 99 88.9
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 3.4e-42 175.3 100 89.0
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.4e-42 175.3 99 85.9
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 4.4e-42 174.9 100 88.0
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 4.4e-42 174.9 100 90.0
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 4.4e-42 174.9 99 88.9
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 4.4e-42 174.9 98 89.8
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 5.7e-42 174.5 100 86.0
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 7.5e-42 174.1 101 88.1
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 7.5e-42 174.1 99 87.9
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 7.5e-42 174.1 104 86.5
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 7.5e-42 174.1 98 88.8
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 7.5e-42 174.1 99 86.9
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 7.5e-42 174.1 99 88.9
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 9.8e-42 173.7 100 89.0
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 9.8e-42 173.7 98 88.8
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.3e-41 173.3 97 86.6
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.3e-41 173.3 100 87.0
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.3e-41 173.3 100 87.0
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.3e-41 173.3 100 88.0
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.3e-41 173.3 100 88.0
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.3e-41 173.3 99 87.9
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.7e-41 172.9 110 80.0
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.7e-41 172.9 101 87.1
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.2e-41 172.6 100 87.0
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 2.8e-41 172.2 100 87.0
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 2.8e-41 172.2 100 87.0
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 2.8e-41 172.2 104 88.5
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.7e-41 171.8 101 85.1
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 3.7e-41 171.8 99 85.9
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 3.7e-41 171.8 99 85.9
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.7e-41 171.8 96 88.5
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 4.8e-41 171.4 101 85.1
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 4.8e-41 171.4 98 87.8
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 6.3e-41 171.0 99 84.8
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 6.3e-41 171.0 99 86.9
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 6.3e-41 171.0 99 84.8
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 6.3e-41 171.0 104 83.7
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 6.3e-41 171.0 99 84.8
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 8.3e-41 170.6 104 82.7
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 8.3e-41 170.6 99 87.9
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 8.3e-41 170.6 99 87.9
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.1e-40 170.2 106 81.1
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.1e-40 170.2 96 89.6
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.1e-40 170.2 96 89.6
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.1e-40 170.2 96 89.6
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.1e-40 170.2 96 89.6
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.1e-40 170.2 99 86.9
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.1e-40 170.2 101 87.1
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.1e-40 170.2 96 89.6
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.4e-40 169.9 104 84.6
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.4e-40 169.9 98 86.7
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.4e-40 169.9 99 85.9
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.4e-40 169.9 99 84.8
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.8e-40 169.5 99 85.9
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 2.4e-40 169.1 104 82.7
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 2.4e-40 169.1 96 88.5
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 2.4e-40 169.1 96 88.5
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 2.4e-40 169.1 103 84.5
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.1e-40 168.3 93 88.2
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.1e-40 168.3 99 82.8
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 5.4e-40 167.9 96 87.5
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 5.4e-40 167.9 98 83.7
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 5.4e-40 167.9 99 85.9
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 7.0e-40 167.5 101 81.2
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 7.0e-40 167.5 99 84.8
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 7.0e-40 167.5 100 88.0
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 7.0e-40 167.5 96 86.5
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 7.0e-40 167.5 100 86.0
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 9.1e-40 167.2 98 85.7
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 9.1e-40 167.2 100 85.0
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.2e-39 166.8 99 83.8
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 2.0e-39 166.0 110 77.3
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.7e-39 165.6 99 86.9
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.7e-39 165.6 99 86.9
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.5e-39 165.2 91 89.0
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 4.5e-39 164.9 99 81.8
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 5.9e-39 164.5 99 85.9
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.7e-39 164.1 98 86.7
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.7e-39 164.1 98 86.7
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.7e-39 164.1 97 82.5
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.7e-39 164.1 97 82.5
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 7.7e-39 164.1 98 81.6
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.0e-38 163.7 96 85.4
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.0e-38 163.7 101 77.2
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 2.2e-38 162.5 96 85.4
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 2.2e-38 162.5 96 85.4
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 2.2e-38 162.5 96 85.4
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 2.9e-38 162.2 100 81.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 2.9e-38 162.2 100 81.0
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 6.5e-38 161.0 88 90.9
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.1e-37 160.2 97 86.6
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.2e-37 158.3 107 80.4
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 4.2e-37 158.3 105 72.4
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.2e-36 156.8 102 79.4
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.6e-36 156.4 139 63.3
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 1.6e-36 156.4 88 86.4
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.7e-36 155.6 99 74.7
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 6.1e-36 154.5 88 86.4
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 8.0e-36 154.1 99 73.7
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.4e-35 153.3 99 73.7
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 2.0e-34 149.4 146 60.3
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 4.4e-34 148.3 130 62.3
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.3e-33 146.7 95 74.7
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 6.3e-33 144.4 77 90.9
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 6.3e-33 144.4 77 90.9
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 6.3e-33 144.4 79 91.1
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.1e-32 143.7 77 90.9
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 7.0e-32 141.0 78 85.9
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 2.7e-31 139.0 121 65.3
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 4.5e-31 138.3 75 88.0
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 1.9e-29 132.9 90 78.9
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 5.5e-29 131.3 99 67.7
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 2.7e-23 112.5 69 85.5
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 7.8e-23 110.9 72 83.3
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.0e-22 110.5 79 72.2
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 5.0e-22 108.2 66 83.3
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 3.3e-21 105.5 80 68.8
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 7.3e-21 104.4 52 98.1
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 2.3e-19 99.4 57 84.2
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 3.4e-18 95.5 95 52.6
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 3.7e-17 92.0 53 88.7
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 3.2e-16 89.0 77 54.5
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 2.0e-15 86.3 53 84.9
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.6e-14 81.3 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.1e-13 80.5 53 75.5
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 7.3e-13 77.8 76 52.6
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.3e-06 57.0 29 79.3


User provided reference genes

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