Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 5.0e-154 547.7 278 100.0
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 3.4e-102 375.6 276 71.7
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 8.4e-101 370.9 276 69.6
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.1e-100 370.5 276 69.2
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.9e-97 359.8 276 67.4
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 4.3e-97 358.6 273 67.4
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 4.3e-97 358.6 276 66.7
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 4.3e-97 358.6 253 68.8
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 7.3e-97 357.8 276 67.8
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 7.3e-97 357.8 273 67.8
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 2.1e-96 356.3 276 66.3
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 1.8e-95 353.2 240 72.9
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 2.4e-95 352.8 238 73.9
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.3e-95 351.7 238 73.9
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 6.9e-95 351.3 276 63.8
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 7.6e-94 347.8 266 66.9
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 5.4e-92 341.7 238 72.7
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 2.7e-91 339.3 276 63.0
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 3.5e-91 339.0 234 71.4
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 1.0e-90 337.4 279 62.0
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 3.0e-90 335.9 277 61.4
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 3.9e-90 335.5 233 71.7
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 3.9e-90 335.5 240 67.9
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.7e-90 334.3 238 71.0
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.1e-89 334.0 232 71.6
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 9.6e-89 330.9 238 68.9
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.3e-88 330.5 279 61.6
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.6e-88 330.1 259 63.7
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 3.7e-88 328.9 228 70.2
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 3.7e-88 328.9 237 69.2
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 6.2e-88 328.2 246 67.5
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 1.4e-87 327.0 281 61.2
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 1.8e-87 326.6 234 70.9
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 5.3e-87 325.1 238 67.6
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 2.0e-86 323.2 278 61.9
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 4.5e-86 322.0 237 69.2
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 9.9e-86 320.9 263 59.7
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.3e-85 320.5 260 65.8
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 3.8e-85 318.9 238 65.5
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 2.5e-84 316.2 276 59.4
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 2.5e-84 316.2 257 63.8
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 3.2e-84 315.8 238 66.8
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 3.2e-84 315.8 240 65.4
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 3.5e-83 312.4 229 66.8
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 2.3e-82 309.7 281 58.0
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 3.9e-82 308.9 281 57.7
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 8.7e-82 307.8 228 65.4
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.9e-81 306.6 239 64.0
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 3.3e-81 305.8 239 63.2
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 5.6e-81 305.1 276 58.0
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 5.6e-81 305.1 265 58.5
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.4e-81 304.7 254 61.4
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 7.4e-81 304.7 254 61.4
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 7.4e-81 304.7 229 67.7
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 9.6e-81 304.3 239 63.2
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 2.1e-80 303.1 223 69.1
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 2.1e-80 303.1 239 63.2
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 2.8e-80 302.8 239 61.9
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 3.7e-80 302.4 235 63.0
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 4.8e-80 302.0 239 62.3
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 4.8e-80 302.0 267 56.2
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 4.8e-80 302.0 237 66.2
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 6.2e-80 301.6 239 62.3
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 6.2e-80 301.6 229 67.2
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 8.2e-80 301.2 239 61.5
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.4e-79 300.4 239 62.3
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.8e-79 300.1 279 58.1
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 2.4e-79 299.7 239 62.3
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 3.1e-79 299.3 237 62.0
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.3e-79 298.5 279 57.7
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 9.0e-79 297.7 239 63.6
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 9.0e-79 297.7 233 61.8
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.0e-78 296.6 239 62.3
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.0e-78 296.6 239 62.3
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 4.5e-78 295.4 233 61.4
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.3e-77 293.9 231 64.1
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.7e-77 293.5 276 56.2
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 8.4e-77 291.2 223 62.8
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 1.9e-76 290.0 237 59.5
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 1.3e-72 277.3 238 60.5
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 8.2e-72 274.6 236 58.5
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-71 274.2 205 66.3
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 1.4e-71 273.9 204 67.2
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 3.4e-70 269.2 189 71.4
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 5.0e-69 265.4 255 54.9
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 1.4e-68 263.8 219 61.2
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.9e-68 263.5 249 55.4
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 4.2e-68 262.3 244 55.3
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 9.4e-68 261.2 195 69.2
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 1.2e-67 260.8 184 72.3
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.2e-67 260.8 185 69.2
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 2.3e-66 256.5 195 68.2
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 3.3e-65 252.7 224 57.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.8e-63 246.9 193 63.7
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 5.9e-62 241.9 242 52.5
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-61 240.0 187 64.2
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-59 233.4 181 65.2
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 2.1e-59 233.4 219 56.2
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.7e-59 233.0 228 51.3
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.0e-58 231.1 221 55.2
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.9e-52 210.3 158 68.4
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.3e-49 199.5 200 55.0
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 7.7e-46 188.3 122 73.8
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 3.0e-42 176.4 145 60.0
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.8e-42 175.3 235 47.2
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 6.8e-42 175.3 120 67.5
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 1.0e-37 161.4 218 41.3
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 4.0e-34 149.4 117 61.5
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.4e-33 146.0 141 52.5
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.3e-32 142.1 252 40.1
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.1e-31 139.4 138 53.6
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.6e-29 131.7 125 57.6
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.8e-26 122.1 80 73.8
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.3e-24 117.9 116 55.2
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 4.9e-24 115.9 86 65.1
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.1e-23 114.8 74 73.0
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-23 113.6 97 56.7
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.6e-20 102.4 122 48.4
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.6e-17 93.6 125 46.4
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 2.2e-16 90.5 97 50.5
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.4e-16 89.0 71 64.8
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.2e-15 86.7 65 63.1
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-14 84.7 96 50.0
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-13 81.6 97 47.4
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 2.3e-13 80.5 95 44.2
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 3.9e-13 79.7 75 52.0
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 1.2e-11 74.7 82 43.9
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.7e-08 64.3 77 44.2
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-08 63.5 53 52.8
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.1e-07 61.6 171 28.7
FvH4_1g23850 Fragaria vesca HOM05D005360 ORTHO05D006501 1.6e-06 57.8 41 68.3
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.6e-06 57.8 50 60.0
Cfa022886 Carpinus fangiana HOM05D005360 ORTHO05D006501 4.6e-06 56.2 220 27.7


User provided reference genes

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