Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g14810 Coffea canephora HOM05D003405 ORTHO05D003920 3.8e-108 394.8 194 100.0
Migut.H00806 Erythranthe guttata HOM05D003405 ORTHO05D003920 3.0e-81 305.4 184 77.7
COL.COLO4_35734 Corchorus olitorius HOM05D003405 ORTHO05D003920 1.8e-78 296.2 189 72.5
SalBow6G4756 Salvia bowleyana HOM05D003405 ORTHO05D003920 2.4e-78 295.8 190 75.3
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 7.7e-77 290.8 187 74.9
Ah.05g167170 Amaranthus hybridus HOM05D003405 ORTHO05D003920 5.5e-75 284.6 185 74.6
AUR62039160 Chenopodium quinoa HOM05D003405 ORTHO05D003920 1.5e-72 276.6 180 72.2
AUR62033117 Chenopodium quinoa HOM05D003405 ORTHO05D003920 9.7e-72 273.9 179 71.5
SGA_v2.0_scaffold81G26011 Striga asiatica HOM05D003405 ORTHO05D003920 1.4e-70 270.0 187 70.1
FAN23G2718 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.8e-70 269.6 164 76.2
Rhsim13G0025400 Rhododendron simsii HOM05D003405 ORTHO05D003920 7.0e-70 267.7 186 72.0
CSS0045191 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 3.8e-68 261.9 187 69.0
ECA240G1009 Erigeron canadensis HOM05D003405 ORTHO05D003920 1.9e-67 259.6 169 70.4
SEGI_38491 Sequoiadendron giganteum HOM05D003405 ORTHO05D003920 1.6e-66 256.5 185 65.4
FAN04G1939 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.4e-65 253.4 186 65.6
Glyma.02G307200 Glycine max HOM05D003405 ORTHO05D003920 1.4e-65 253.4 166 70.5
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 2.3e-65 252.7 162 72.2
Haze_21718 Corylus avellana HOM05D003405 ORTHO05D003920 8.8e-65 250.8 158 72.8
Aqoxy2G03536 Aquilegia oxysepala HOM05D003405 ORTHO05D003920 1.2e-64 250.4 185 65.4
BcaC01g00579 Brassica carinata HOM05D003405 ORTHO05D003920 1.5e-64 250.0 169 73.4
Dinv32930 Davidia involucrata HOM05D003405 ORTHO05D003920 1.5e-64 250.0 164 73.8
Oeu047246.2 Olea europaea HOM05D003405 ORTHO05D003920 1.5e-64 250.0 166 74.1
C03p81570 Brassica napus HOM05D003405 ORTHO05D003920 2.0e-64 249.6 169 73.4
BolC3t20427H Brassica oleracea HOM05D003405 ORTHO05D003920 2.0e-64 249.6 169 73.4
FAN08G1135 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.0e-64 249.6 185 64.9
FAN18G4171 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.0e-64 249.6 185 64.9
Rhsim05G0047900 Rhododendron simsii HOM05D003405 ORTHO05D003920 5.7e-64 248.1 298 48.0
RhsimUnG0142200 Rhododendron simsii HOM05D003405 ORTHO05D003920 5.7e-64 248.1 298 48.0
Ciclev10004806m.g Citrus clementina HOM05D003405 ORTHO05D003920 7.5e-64 247.7 159 73.6
FAN28G1735 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.3e-63 246.9 185 63.8
Gohir.A05G385400 Gossypium hirsutum HOM05D003405 ORTHO05D003920 2.2e-63 246.1 160 71.2
Gorai.012G034400 Gossypium raimondii HOM05D003405 ORTHO05D003920 6.3e-63 244.6 158 71.5
Solyc04g005330.3 Solanum lycopersicum HOM05D003405 ORTHO05D003920 2.4e-62 242.7 159 72.3
PGSC0003DMG400023568 Solanum tuberosum HOM05D003405 ORTHO05D003920 2.4e-62 242.7 157 73.2
Gohir.D04G022600 Gossypium hirsutum HOM05D003405 ORTHO05D003920 3.1e-62 242.3 158 70.9
Sopen04g001310 Solanum pennellii HOM05D003405 ORTHO05D003920 3.1e-62 242.3 159 72.3
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 5.4e-62 241.5 190 62.6
TWI73G0135 Tripterygium wilfordii HOM05D003405 ORTHO05D003920 1.6e-61 240.0 153 71.9
GSVIVG01018880001 Vitis vinifera HOM05D003405 ORTHO05D003920 2.0e-61 239.6 183 63.9
arahy.Tifrunner.gnm1.ann1.LK2XUL Arachis hypogaea HOM05D003405 ORTHO05D003920 3.5e-61 238.8 184 63.6
Eucgr.H02854 Eucalyptus grandis HOM05D003405 ORTHO05D003920 2.9e-60 235.7 180 64.4
Ca_20890_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 1.1e-59 233.8 180 58.9
Aa31LG6G1580 Aethionema arabicum HOM05D003405 ORTHO05D003920 4.2e-59 231.9 158 72.8
Actinidia09137 Actinidia chinensis HOM05D003405 ORTHO05D003920 1.6e-58 229.9 144 76.4
BcaB04g18507 Brassica carinata HOM05D003405 ORTHO05D003920 3.6e-58 228.8 156 71.8
EL10As7g23803 Beta vulgaris HOM05D003405 ORTHO05D003920 1.4e-57 226.9 139 77.0
Sc09g0007320 Simmondsia chinensis HOM05D003405 ORTHO05D003920 2.0e-56 223.0 151 68.9
LjContig00081g0028006 Lotus japonicus HOM05D003405 ORTHO05D003920 2.6e-56 222.6 163 66.3
Atru.chr1.1031 Acer truncatum HOM05D003405 ORTHO05D003920 3.4e-56 222.2 154 68.2
arahy.Tifrunner.gnm1.ann1.LTR966 Arachis hypogaea HOM05D003405 ORTHO05D003920 9.8e-56 220.7 186 60.2
unitig_52.g17243 Utricularia gibba HOM05D003405 ORTHO05D003920 9.8e-56 220.7 201 56.7
CSS0031696 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 2.2e-55 219.5 162 66.7
MBI16_g36844_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 3.7e-55 218.8 207 57.0
arahy.Tifrunner.gnm1.ann1.6C167N Arachis hypogaea HOM05D003405 ORTHO05D003920 8.3e-55 217.6 186 58.6
Actinidia00757 Actinidia chinensis HOM05D003405 ORTHO05D003920 1.4e-54 216.9 163 66.9
Dinv34758 Davidia involucrata HOM05D003405 ORTHO05D003920 1.4e-54 216.9 159 67.9
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 2.4e-54 216.1 186 58.1
Lj9A413G54 Lonicera japonica HOM05D003405 ORTHO05D003920 2.4e-54 216.1 142 76.1
MBI02_g23715_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 4.1e-54 215.3 207 56.0
arahy.Tifrunner.gnm1.ann1.ZY1N1V Arachis hypogaea HOM05D003405 ORTHO05D003920 5.4e-54 214.9 187 58.8
BcaNung04868 Brassica carinata HOM05D003405 ORTHO05D003920 2.7e-53 212.6 152 69.1
DCAR_023249 Daucus carota HOM05D003405 ORTHO05D003920 1.3e-52 210.3 166 63.3
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 2.9e-52 209.1 163 63.2
BraA08t33397Z Brassica rapa HOM05D003405 ORTHO05D003920 1.5e-51 206.8 150 66.0
TAR376G0111 Trochodendron aralioides HOM05D003405 ORTHO05D003920 2.5e-51 206.1 160 63.8
FvH4_5g33300 Fragaria vesca HOM05D003405 ORTHO05D003920 3.3e-51 205.7 163 60.7
RcHm_v2.0_Chr2g0100561 Rosa chinensis HOM05D003405 ORTHO05D003920 3.3e-51 205.7 163 60.7
Thecc.01G131300 Theobroma cacao HOM05D003405 ORTHO05D003920 5.6e-51 204.9 132 74.2
MD12G1093200 Malus domestica HOM05D003405 ORTHO05D003920 9.5e-51 204.1 163 60.1
vmacro02576 Vaccinium macrocarpon HOM05D003405 ORTHO05D003920 1.6e-50 203.4 158 65.2
MD14G1085200 Malus domestica HOM05D003405 ORTHO05D003920 2.1e-50 203.0 163 59.5
Glyma.14G005900 Glycine max HOM05D003405 ORTHO05D003920 3.6e-50 202.2 164 61.0
Atru.chr3.717 Acer truncatum HOM05D003405 ORTHO05D003920 4.7e-50 201.8 160 60.6
CiPaw.08G138300 Carya illinoinensis HOM05D003405 ORTHO05D003920 4.7e-50 201.8 155 61.9
Manes.12G078200 Manihot esculenta HOM05D003405 ORTHO05D003920 8.0e-50 201.1 159 62.3
Sabra07G0016700 Salix brachista HOM05D003405 ORTHO05D003920 1.4e-49 200.3 200 53.5
PSO832G1536 Papaver somniferum HOM05D003405 ORTHO05D003920 3.0e-49 199.1 183 55.7
THA.LOC104821304 Tarenaya hassleriana HOM05D003405 ORTHO05D003920 3.0e-49 199.1 157 62.4
Lsat_1_v5_gn_5_59220 Lactuca sativa HOM05D003405 ORTHO05D003920 6.8e-49 198.0 185 53.0
PGR083G0802 Punica granatum HOM05D003405 ORTHO05D003920 8.9e-49 197.6 159 59.7
arahy.Tifrunner.gnm1.ann1.LKD0H4 Arachis hypogaea HOM05D003405 ORTHO05D003920 3.4e-48 195.7 187 54.0
Prupe.7G160700 Prunus persica HOM05D003405 ORTHO05D003920 3.4e-48 195.7 158 59.5
arahy.Tifrunner.gnm1.ann1.AGQ12H Arachis hypogaea HOM05D003405 ORTHO05D003920 5.7e-48 194.9 186 53.2
CiPaw.07G051500 Carya illinoinensis HOM05D003405 ORTHO05D003920 7.5e-48 194.5 158 60.8
Hma1.2p1_0822F.1_g224510 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 9.8e-48 194.1 123 73.2
Atru.chr3.672 Acer truncatum HOM05D003405 ORTHO05D003920 2.2e-47 193.0 131 69.5
Manes.01G139900 Manihot esculenta HOM05D003405 ORTHO05D003920 2.2e-47 193.0 118 78.0
HanXRQChr13g0411651 Helianthus annuus HOM05D003405 ORTHO05D003920 1.8e-46 189.9 128 71.9
Sp7g17610 Schrenkiella parvula HOM05D003405 ORTHO05D003920 4.1e-46 188.7 157 62.4
Carub.0007s2229 Capsella rubella HOM05D003405 ORTHO05D003920 5.4e-46 188.3 158 61.4
Thhalv10024971m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 9.2e-46 187.6 158 62.0
Oeu028071.1 Olea europaea HOM05D003405 ORTHO05D003920 9.2e-46 187.6 107 82.2
Pp3c4_20160 Physcomitrium patens HOM05D003405 ORTHO05D003920 1.2e-45 187.2 149 57.0
VMungo0647G2029 Vigna mungo HOM05D003405 ORTHO05D003920 2.0e-45 186.4 134 67.9
CARHR225780 Cardamine hirsuta HOM05D003405 ORTHO05D003920 4.6e-45 185.3 130 71.5
AL7G35270 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 5.9e-45 184.9 157 61.1
Mapoly0004s0245 Marchantia polymorpha HOM05D003405 ORTHO05D003920 7.8e-45 184.5 162 53.7
BcaNung02686 Brassica carinata HOM05D003405 ORTHO05D003920 3.0e-44 182.6 165 57.0
BcaC09g51456 Brassica carinata HOM05D003405 ORTHO05D003920 3.9e-44 182.2 156 60.3
C01p12940 Brassica napus HOM05D003405 ORTHO05D003920 3.9e-44 182.2 156 60.3
BolC1t01269H Brassica oleracea HOM05D003405 ORTHO05D003920 3.9e-44 182.2 156 60.3
A01p10930 Brassica napus HOM05D003405 ORTHO05D003920 5.0e-44 181.8 156 60.3
BraA01t01039Z Brassica rapa HOM05D003405 ORTHO05D003920 5.0e-44 181.8 156 60.3
PGSC0003DMG402005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 5.0e-44 181.8 182 54.4
arahy.Tifrunner.gnm1.ann1.015YF3 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.1e-43 180.6 209 48.3
AT4G18905 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 5.6e-43 178.3 157 58.0
MELO3C004100.2 Cucumis melo HOM05D003405 ORTHO05D003920 7.3e-43 177.9 127 68.5
arahy.Tifrunner.gnm1.ann1.Q3GRJ7 Arachis hypogaea HOM05D003405 ORTHO05D003920 2.1e-42 176.4 163 56.4
FAN19G0435 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.8e-42 176.0 185 51.9
BcaC01g00577 Brassica carinata HOM05D003405 ORTHO05D003920 3.1e-41 172.6 129 63.6
SGA_v2.0_scaffold80G25931 Striga asiatica HOM05D003405 ORTHO05D003920 4.4e-40 168.7 190 50.5
BraA01t00304Z Brassica rapa HOM05D003405 ORTHO05D003920 1.7e-39 166.8 178 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2786 Anthoceros agrestis HOM05D003405 ORTHO05D003920 4.9e-39 165.2 135 57.0
FvH4_1g12600 Fragaria vesca HOM05D003405 ORTHO05D003920 8.3e-39 164.5 103 72.8
AT4G18900 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 7.0e-38 161.4 124 60.5
Hma1.2p1_0083F.1_g042700 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 7.0e-38 161.4 111 67.6
C03p81560 Brassica napus HOM05D003405 ORTHO05D003920 9.2e-38 161.0 124 62.9
BolC3t20426H Brassica oleracea HOM05D003405 ORTHO05D003920 9.2e-38 161.0 124 62.9
HanXRQChr03g0083001 Helianthus annuus HOM05D003405 ORTHO05D003920 9.2e-38 161.0 120 65.0
Psat2g004040 Pisum sativum HOM05D003405 ORTHO05D003920 1.2e-37 160.6 112 68.8
Potri.007G019833 Populus trichocarpa HOM05D003405 ORTHO05D003920 1.2e-37 160.6 125 64.0
CsaV3_2G007870 Cucumis sativus L. HOM05D003405 ORTHO05D003920 1.6e-37 160.2 152 53.3
Dinv40394 Davidia involucrata HOM05D003405 ORTHO05D003920 2.7e-37 159.5 132 62.9
Potri.007G019601 Populus trichocarpa HOM05D003405 ORTHO05D003920 2.7e-37 159.5 125 63.2
BcaB04g18506 Brassica carinata HOM05D003405 ORTHO05D003920 3.5e-37 159.1 113 68.1
PSO761G0245 Papaver somniferum HOM05D003405 ORTHO05D003920 6.6e-36 154.8 105 68.6
FAN26G2328 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.5e-35 153.7 225 42.7
BcaC06g30604 Brassica carinata HOM05D003405 ORTHO05D003920 1.4e-33 147.1 175 50.9
Duzib264G0139 Durio zibethinus HOM05D003405 ORTHO05D003920 2.3e-33 146.4 163 48.5
Nitab4.5_0001652g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 3.1e-33 146.0 129 59.7
Nitab4.5_0004347g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 6.8e-33 144.8 127 59.8
Peaxi162Scf00047g00219 Petunia axillaris HOM05D003405 ORTHO05D003920 3.4e-32 142.5 134 56.7
QL06p035199 Quercus lobata HOM05D003405 ORTHO05D003920 2.2e-31 139.8 127 55.1
Nitab4.5_0000401g0230 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.9e-30 136.7 135 54.8
VMungo0540G1594 Vigna mungo HOM05D003405 ORTHO05D003920 1.9e-30 136.7 181 42.5
C01p03540 Brassica napus HOM05D003405 ORTHO05D003920 2.4e-30 136.3 96 68.8
BolC1t00343H Brassica oleracea HOM05D003405 ORTHO05D003920 2.4e-30 136.3 96 68.8
CDE09G0427 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 4.1e-30 135.6 136 49.3
Nitab4.5_0003101g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 4.1e-30 135.6 131 55.7
Sed0024756 Sechium edule HOM05D003405 ORTHO05D003920 4.1e-30 135.6 126 54.8
BcaNung00601 Brassica carinata HOM05D003405 ORTHO05D003920 7.1e-30 134.8 95 68.4
CDE02G2548 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 9.2e-30 134.4 125 52.0
ClCG04G004000 Citrullus lanatus HOM05D003405 ORTHO05D003920 9.2e-30 134.4 128 57.0
SMO361G0182 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 1.6e-29 133.7 124 50.0
Os01g0924300 Oryza sativa ssp. japonica HOM05D003405 ORTHO05D003920 2.7e-29 132.9 130 53.1
CDE09G0650 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 7.8e-29 131.3 124 51.6
Zm00001eb142980 Zea mays HOM05D003405 ORTHO05D003920 8.6e-28 127.9 128 52.3
Sp7g33160 Schrenkiella parvula HOM05D003405 ORTHO05D003920 1.9e-27 126.7 93 66.7
Cfa021699 Carpinus fangiana HOM05D003405 ORTHO05D003920 3.3e-27 125.9 182 37.9
BcaNung00602 Brassica carinata HOM05D003405 ORTHO05D003920 1.2e-26 124.0 117 56.4
A01p03190 Brassica napus HOM05D003405 ORTHO05D003920 2.8e-26 122.9 154 47.4
AL7G35280 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 8.1e-26 121.3 104 57.7
Ca_21295_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 8.1e-26 121.3 107 57.9
CBR_g8571 Chara braunii HOM05D003405 ORTHO05D003920 1.4e-25 120.6 144 40.3
arahy.Tifrunner.gnm1.ann1.1Z7RSE Arachis hypogaea HOM05D003405 ORTHO05D003920 4.0e-25 119.0 142 49.3
Ca_06470_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 2.0e-24 116.7 114 53.5
SMO361G0432 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 2.0e-24 116.7 92 53.3
C07p50090 Brassica napus HOM05D003405 ORTHO05D003920 4.4e-24 115.5 77 68.8
BolC7t45512H Brassica oleracea HOM05D003405 ORTHO05D003920 1.7e-23 113.6 77 67.5
Carub.0007s2230 Capsella rubella HOM05D003405 ORTHO05D003920 6.4e-23 111.7 119 48.7
Medtr5g097870 Medicago truncatula HOM05D003405 ORTHO05D003920 8.4e-23 111.3 110 53.6
TPR.G15067 Trifolium pratense HOM05D003405 ORTHO05D003920 8.4e-23 111.3 110 52.7
AL7G15790 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 1.1e-22 110.9 113 54.0
ClCG06G014970 Citrullus lanatus HOM05D003405 ORTHO05D003920 9.2e-22 107.8 81 61.7
Lalb_Chr17g0349241 Lupinus albus HOM05D003405 ORTHO05D003920 4.6e-21 105.5 96 54.2
Cpa.g.sc89.74 Carica papaya HOM05D003405 ORTHO05D003920 1.5e-19 100.5 149 40.3
PRCOL_00001431 Prasinoderma coloniale HOM05D003405 ORTHO05D003920 1.2e-18 97.4 165 33.3
MCO01G177 Micromonas commoda HOM05D003405 ORTHO05D003920 2.1e-18 96.7 92 46.7
PGSC0003DMG401005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 8.1e-18 94.7 61 73.8
BraA03t14247Z Brassica rapa HOM05D003405 ORTHO05D003920 2.6e-16 89.7 71 62.0
Thecc.09G077300 Theobroma cacao HOM05D003405 ORTHO05D003920 1.7e-15 87.0 66 59.1
ATR0693G254 Amborella trichopoda HOM05D003405 ORTHO05D003920 6.4e-15 85.1 57 68.4
VMungo0540G1027 Vigna mungo HOM05D003405 ORTHO05D003920 3.2e-14 82.8 101 42.6
TAR628G0767 Trochodendron aralioides HOM05D003405 ORTHO05D003920 7.1e-14 81.6 59 67.8
Duzib106G0895 Durio zibethinus HOM05D003405 ORTHO05D003920 2.7e-13 79.7 66 56.1
AL3G51990 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 4.6e-13 79.0 70 54.3
HPP92_003102 Vanilla planifolia HOM05D003405 ORTHO05D003920 2.4e-09 66.6 54 61.1
Cre01.g035000 Chlamydomonas reinhardtii HOM05D003405 ORTHO05D003920 1.2e-08 64.3 55 54.5
Thhalv10027098m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 2.9e-07 59.7 47 63.8
Oeu000196.1 Olea europaea HOM05D000347 ORTHO05D001997 2.4e-06 56.6 170 30.0
CARHR272030 Cardamine hirsuta HOM05D000347 ORTHO05D001997 3.2e-06 56.2 126 32.5
ECA236G2053 Erigeron canadensis HOM05D003753 ORTHO05D005081 5.4e-06 55.5 174 26.4
HPP92_002480 Vanilla planifolia HOM05D000347 ORTHO05D001997 5.4e-06 55.5 125 32.8
Haze_26415 Corylus avellana HOM05D000347 ORTHO05D001997 7.1e-06 55.1 128 32.0
Lsat_1_v5_gn_9_118141 Lactuca sativa HOM05D000347 ORTHO05D001997 7.1e-06 55.1 170 28.8


User provided reference genes

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