Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g14800 Coffea canephora HOM05D000908 ORTHO05D018210 1.9e-39 165.2 77 100.0
Cc00_g27950 Coffea canephora HOM05D000908 ORTHO05D018210 1.8e-32 142.1 68 95.6
vmacro16518 Vaccinium macrocarpon HOM05D000908 ORTHO05D000789 1.9e-23 112.1 75 69.3
Oeu047263.1 Olea europaea HOM05D000908 ORTHO05D000789 2.1e-22 108.6 76 67.1
Dinv10678 Davidia involucrata HOM05D000908 ORTHO05D000789 4.8e-22 107.5 76 64.5
PSO478G4156 Papaver somniferum HOM05D000908 ORTHO05D000789 6.3e-22 107.1 76 63.2
CSS0028793 Camellia sinensis var. sinensis HOM05D000908 ORTHO05D000789 8.2e-22 106.7 76 67.1
Thecc.03G095900 Theobroma cacao HOM05D000908 ORTHO05D000789 1.1e-21 106.3 76 67.1
Rhsim12G0153200 Rhododendron simsii HOM05D000908 ORTHO05D000789 5.3e-21 104.0 70 71.4
Hma1.2p1_0060F.1_g033390 Hydrangea macrophylla HOM05D000908 ORTHO05D000789 6.9e-21 103.6 76 65.8
Migut.I00252 Erythranthe guttata HOM05D000908 ORTHO05D000789 9.0e-21 103.2 69 69.6
QL10p018548 Quercus lobata HOM05D000908 ORTHO05D000789 9.0e-21 103.2 67 67.2
vmacro16519 Vaccinium macrocarpon HOM05D000908 ORTHO05D000789 9.0e-21 103.2 70 70.0
MSTRG.11362 Avicennia marina HOM05D000908 ORTHO05D000789 1.2e-20 102.8 70 67.1
Duzib205G1723 Durio zibethinus HOM05D000908 ORTHO05D000789 1.5e-20 102.4 71 67.6
Nn4g23338 Nelumbo nucifera HOM05D000908 ORTHO05D000789 4.5e-20 100.9 69 63.8
SGA_v2.0_scaffold313G48315 Striga asiatica HOM05D000908 ORTHO05D000789 4.5e-20 100.9 65 69.2
CAN.G479.39 Capsicum annuum HOM05D000908 ORTHO05D000789 5.9e-20 100.5 72 63.9
Duzib068G0018 Durio zibethinus HOM05D000908 ORTHO05D000789 7.6e-20 100.1 69 66.7
HanXRQChr09g0270921 Helianthus annuus HOM05D000908 ORTHO05D000789 7.6e-20 100.1 74 63.5
Gohir.A12G180200 Gossypium hirsutum HOM05D000908 ORTHO05D000789 1.0e-19 99.8 64 71.9
Gohir.D12G182900 Gossypium hirsutum HOM05D000908 ORTHO05D000789 1.0e-19 99.8 64 71.9
Gorai.008G196200 Gossypium raimondii HOM05D000908 ORTHO05D000789 1.0e-19 99.8 64 71.9
Lj5A106T72 Lonicera japonica HOM05D000908 ORTHO05D000789 1.0e-19 99.8 60 73.3
Rhsim12G0153100 Rhododendron simsii HOM05D000908 ORTHO05D000789 1.0e-19 99.8 68 69.1
TAR629G2688 Trochodendron aralioides HOM05D000908 ORTHO05D000789 1.7e-19 99.0 76 57.9
Actinidia19013 Actinidia chinensis HOM05D000908 ORTHO05D000789 2.9e-19 98.2 69 63.8
ECA232G1599 Erigeron canadensis HOM05D000908 ORTHO05D000789 2.9e-19 98.2 60 73.3
Nitab4.5_0001211g0010 Nicotiana tabacum HOM05D000908 ORTHO05D000789 2.9e-19 98.2 72 63.9
Nitab4.5_0014042g0010 Nicotiana tabacum HOM05D000908 ORTHO05D000789 2.9e-19 98.2 72 63.9
Actinidia35017 Actinidia chinensis HOM05D000908 ORTHO05D000789 3.8e-19 97.8 68 64.7
EL10Ac5g11084 Beta vulgaris HOM05D000908 ORTHO05D000789 5.0e-19 97.4 76 63.2
Sc04g0002970 Simmondsia chinensis HOM05D000908 ORTHO05D000789 6.5e-19 97.1 68 64.7
CANSAT80G2881 Cannabis sativa HOM05D000908 ORTHO05D000789 8.5e-19 96.7 72 59.7
Ciclev10020101m.g Citrus clementina HOM05D000908 ORTHO05D000789 8.5e-19 96.7 72 65.3
Solyc03g115560.3 Solanum lycopersicum HOM05D000908 ORTHO05D000789 8.5e-19 96.7 69 63.8
Sopen03g034550 Solanum pennellii HOM05D000908 ORTHO05D000789 8.5e-19 96.7 69 63.8
PGSC0003DMG400024556 Solanum tuberosum HOM05D000908 ORTHO05D000789 8.5e-19 96.7 69 63.8
Cpa.g.sc13.309 Carica papaya HOM05D000908 ORTHO05D000789 1.1e-18 96.3 70 62.9
AUR62008483 Chenopodium quinoa HOM05D000908 ORTHO05D000789 1.4e-18 95.9 76 60.5
AUR62021610 Chenopodium quinoa HOM05D000908 ORTHO05D000789 1.9e-18 95.5 76 60.5
Potri.012G067500 Populus trichocarpa HOM05D000908 ORTHO05D000789 1.9e-18 95.5 68 66.2
Atru.chr9.303 Acer truncatum HOM05D000908 ORTHO05D000789 3.2e-18 94.7 71 62.0
Aqoxy3G00447 Aquilegia oxysepala HOM05D000908 ORTHO05D000789 3.2e-18 94.7 76 56.6
MD06G1199100 Malus domestica HOM05D000908 ORTHO05D000789 3.2e-18 94.7 69 62.3
TAR622G0950 Trochodendron aralioides HOM05D000908 ORTHO05D000789 3.2e-18 94.7 75 58.7
MD14G1206500 Malus domestica HOM05D000908 ORTHO05D000789 4.2e-18 94.4 69 62.3
Lsat_1_v5_gn_4_109881 Lactuca sativa HOM05D000908 ORTHO05D000789 5.5e-18 94.0 72 61.1
Eucgr.B00562 Eucalyptus grandis HOM05D000908 ORTHO05D000789 7.2e-18 93.6 75 54.7
AL6G18140 Arabidopsis lyrata HOM05D000908 ORTHO05D000789 9.3e-18 93.2 59 72.9
Carub.0006s0672 Capsella rubella HOM05D000908 ORTHO05D000789 9.3e-18 93.2 59 72.9
CARHR205380 Cardamine hirsuta HOM05D000908 ORTHO05D000789 9.3e-18 93.2 59 72.9
Oeu052469.1 Olea europaea HOM05D000908 ORTHO05D000789 1.2e-17 92.8 68 63.2
Peaxi162Scf00274g00023 Petunia axillaris HOM05D000908 ORTHO05D000789 1.2e-17 92.8 72 62.5
RcHm_v2.0_Chr7g0182301 Rosa chinensis HOM05D000908 ORTHO05D000789 2.1e-17 92.0 67 62.7
Haze_07671 Corylus avellana HOM05D000908 ORTHO05D000789 2.7e-17 91.7 66 65.2
Thhalv10013475m.g Eutrema salsugineum HOM05D000908 ORTHO05D000789 2.7e-17 91.7 59 72.9
BcaB05g21598 Brassica carinata HOM05D000908 ORTHO05D000789 3.6e-17 91.3 57 73.7
Cfa019290 Carpinus fangiana HOM05D000908 ORTHO05D000789 3.6e-17 91.3 66 63.6
FvH4_5g14390 Fragaria vesca HOM05D000908 ORTHO05D000789 3.6e-17 91.3 59 69.5
FAN08G2143 Fragaria x ananassa HOM05D000908 ORTHO05D000789 3.6e-17 91.3 59 69.5
FAN13G0098 Fragaria x ananassa HOM05D000908 ORTHO05D000789 3.6e-17 91.3 59 69.5
Manes.06G088200 Manihot esculenta HOM05D000908 ORTHO05D000789 3.6e-17 91.3 59 69.5
Sabra12G0047800 Salix brachista HOM05D000908 ORTHO05D000789 3.6e-17 91.3 59 71.2
Sp6g35130 Schrenkiella parvula HOM05D000908 ORTHO05D000789 3.6e-17 91.3 66 65.2
Glyma.04G165000 Glycine max HOM05D000908 ORTHO05D000789 4.6e-17 90.9 60 71.7
AT5G07800 Arabidopsis thaliana HOM05D000908 ORTHO05D000789 6.1e-17 90.5 57 71.9
Glyma.06G198100 Glycine max HOM05D000908 ORTHO05D000789 6.1e-17 90.5 63 66.7
BcaC06g32507 Brassica carinata HOM05D000908 ORTHO05D000789 7.9e-17 90.1 57 73.7
BcaC06g32515 Brassica carinata HOM05D000908 ORTHO05D000789 7.9e-17 90.1 57 73.7
A10p28710 Brassica napus HOM05D000908 ORTHO05D000789 7.9e-17 90.1 57 73.7
C09p69020 Brassica napus HOM05D000908 ORTHO05D000789 7.9e-17 90.1 57 73.7
BolC9t59647H Brassica oleracea HOM05D000908 ORTHO05D000789 7.9e-17 90.1 57 73.7
BraA10t44918Z Brassica rapa HOM05D000908 ORTHO05D000789 7.9e-17 90.1 57 73.7
MD14G1206800 Malus domestica HOM05D000908 ORTHO05D000789 7.9e-17 90.1 69 58.0
TWI81G0245 Tripterygium wilfordii HOM05D000908 ORTHO05D000789 7.9e-17 90.1 67 62.7
BraA02t04932Z Brassica rapa HOM05D000908 ORTHO05D000789 1.0e-16 89.7 57 71.9
Prupe.5G199900 Prunus persica HOM05D000908 ORTHO05D000789 1.0e-16 89.7 69 60.9
THA.LOC104801397 Tarenaya hassleriana HOM05D000908 ORTHO05D000789 1.0e-16 89.7 59 69.5
HPP92_017526 Vanilla planifolia HOM05D000908 ORTHO05D000789 1.0e-16 89.7 75 54.7
FAN18G3679 Fragaria x ananassa HOM05D000908 ORTHO05D000789 1.3e-16 89.4 59 67.8
Sed0025079 Sechium edule HOM05D000908 ORTHO05D000789 1.3e-16 89.4 76 56.6
C02p03280 Brassica napus HOM05D000908 ORTHO05D000789 1.8e-16 89.0 57 71.9
BolC2t06292H Brassica oleracea HOM05D000908 ORTHO05D000789 1.8e-16 89.0 57 71.9
PGR089G0005 Punica granatum HOM05D000908 ORTHO05D000789 1.8e-16 89.0 63 60.3
AT5G61290 Arabidopsis thaliana HOM05D000908 ORTHO05D000789 2.3e-16 88.6 68 61.8
CiPaw.11G049100 Carya illinoinensis HOM05D000908 ORTHO05D000789 3.0e-16 88.2 67 61.2
MELO3C002007.2 Cucumis melo HOM05D000908 ORTHO05D000789 3.0e-16 88.2 75 57.3
Lj1g0015793 Lotus japonicus HOM05D000908 ORTHO05D000789 3.0e-16 88.2 63 66.7
Phvul.009G190698 Phaseolus vulgaris HOM05D000908 ORTHO05D000789 3.0e-16 88.2 63 63.5
Peaxi162Scf00106g00614 Petunia axillaris HOM05D000908 ORTHO05D000789 3.9e-16 87.8 57 66.7
CsaV3_1G005750 Cucumis sativus L. HOM05D000908 ORTHO05D000789 5.1e-16 87.4 68 61.8
ClCG04G012010 Citrullus lanatus HOM05D000908 ORTHO05D000789 6.7e-16 87.0 76 56.6
Medtr3g437580 Medicago truncatula HOM05D000908 ORTHO05D000789 6.7e-16 87.0 63 61.9
VMungo1309G2483 Vigna mungo HOM05D000908 ORTHO05D000789 6.7e-16 87.0 63 61.9
A03p46930 Brassica napus HOM05D000908 ORTHO05D000789 1.1e-15 86.3 60 60.0
CSS0040396 Camellia sinensis var. sinensis HOM05D000908 ORTHO05D000789 1.1e-15 86.3 62 61.3
AL8G37950 Arabidopsis lyrata HOM05D000908 ORTHO05D000789 1.5e-15 85.9 67 59.7
BcaC06g33227 Brassica carinata HOM05D000908 ORTHO05D000789 1.5e-15 85.9 58 62.1
C07p44970 Brassica napus HOM05D000908 ORTHO05D000789 1.5e-15 85.9 58 62.1
BolC7t45020H Brassica oleracea HOM05D000908 ORTHO05D000789 1.5e-15 85.9 58 62.1
arahy.Tifrunner.gnm1.ann1.T19D7U Arachis hypogaea HOM05D000908 ORTHO05D000789 1.9e-15 85.5 61 67.2
BcaC06g33162 Brassica carinata HOM05D000908 ORTHO05D000789 1.9e-15 85.5 60 60.0
GSVIVG01007934001 Vitis vinifera HOM05D000908 ORTHO05D000789 2.5e-15 85.1 59 67.8
BraA03t13812Z Brassica rapa HOM05D000908 ORTHO05D000789 3.3e-15 84.7 58 62.1
Thhalv10004168m.g Eutrema salsugineum HOM05D000908 ORTHO05D000789 4.3e-15 84.3 68 58.8
Ah.11g048100 Amaranthus hybridus HOM05D000908 ORTHO05D000789 5.7e-15 84.0 67 58.2
arahy.Tifrunner.gnm1.ann1.19HT20 Arachis hypogaea HOM05D000908 ORTHO05D000789 5.7e-15 84.0 61 67.2
BcaC06g33163 Brassica carinata HOM05D000908 ORTHO05D000789 7.4e-15 83.6 67 56.7
Psat5g181040 Pisum sativum HOM05D000908 ORTHO05D000789 7.4e-15 83.6 61 60.7
Sp2g24520 Schrenkiella parvula HOM05D000908 ORTHO05D000789 9.7e-15 83.2 68 58.8
GSVIVG01007933001 Vitis vinifera HOM05D000908 ORTHO05D000789 9.7e-15 83.2 67 56.7
COL.COLO4_06167 Corchorus olitorius HOM05D000908 ORTHO05D000789 1.3e-14 82.8 70 54.3
BcaC06g33226 Brassica carinata HOM05D000908 ORTHO05D000789 1.6e-14 82.4 67 56.7
A03p46920 Brassica napus HOM05D000908 ORTHO05D000789 1.6e-14 82.4 67 56.7
C07p44960 Brassica napus HOM05D000908 ORTHO05D000789 1.6e-14 82.4 67 56.7
BolC7t45019H Brassica oleracea HOM05D000908 ORTHO05D000789 1.6e-14 82.4 67 56.7
BraA03t13811Z Brassica rapa HOM05D000908 ORTHO05D000789 1.6e-14 82.4 67 56.7
Lj4g0013611 Lotus japonicus HOM05D000908 ORTHO05D000789 1.6e-14 82.4 67 56.7
Aa31LG3G18670 Aethionema arabicum HOM05D000908 ORTHO05D000789 2.2e-14 82.0 66 60.6
CARHR275040 Cardamine hirsuta HOM05D000908 ORTHO05D000789 6.3e-14 80.5 59 61.0
Ca_13641_v3 Cicer arietinum L. HOM05D000908 ORTHO05D000789 8.2e-14 80.1 61 60.7
Glyma.05G023700 Glycine max HOM05D000908 ORTHO05D000789 1.1e-13 79.7 61 62.3
Glyma.05G023800 Glycine max HOM05D000908 ORTHO05D000789 1.4e-13 79.3 63 58.7
Glyma.05G023601 Glycine max HOM05D000908 ORTHO05D018210 2.4e-13 78.6 61 60.7
TPR.G12245 Trifolium pratense HOM05D000908 ORTHO05D000789 4.1e-13 77.8 61 57.4
Actinidia04854 Actinidia chinensis HOM05D000908 ORTHO05D018210 5.3e-13 77.4 61 54.1
FAN24G0797 Fragaria x ananassa HOM05D000908 ORTHO05D018210 6.9e-13 77.0 64 53.1
Nn3g17374 Nelumbo nucifera HOM05D000908 ORTHO05D018210 6.9e-13 77.0 61 50.8
Carub.0008s2197 Capsella rubella HOM05D000908 ORTHO05D000789 9.1e-13 76.6 68 52.9
VMungo0778G0001 Vigna mungo HOM05D000908 ORTHO05D000789 1.5e-12 75.9 62 58.1
FvH4_2g15410 Fragaria vesca HOM05D000908 ORTHO05D000789 4.5e-12 74.3 59 54.2
Actinidia09238 Actinidia chinensis HOM05D000908 ORTHO05D018210 7.7e-12 73.6 62 51.6
Peaxi162Scf00106g00620 Petunia axillaris HOM05D000908 ORTHO05D000789 1.0e-11 73.2 46 69.6
FAN20G2209 Fragaria x ananassa HOM05D000908 ORTHO05D000789 1.3e-11 72.8 56 57.1
MD14G1207200 Malus domestica HOM05D000908 ORTHO05D000789 1.7e-11 72.4 59 61.0
CARHR275050 Cardamine hirsuta HOM05D000908 ORTHO05D000789 5.0e-11 70.9 62 53.2
DCAR_013365 Daucus carota HOM05D000908 ORTHO05D000789 6.5e-11 70.5 54 57.4
Eucgr.B00559 Eucalyptus grandis HOM05D000908 ORTHO05D000789 6.5e-11 70.5 57 56.1
Aa31LG3G18660 Aethionema arabicum HOM05D000908 ORTHO05D000789 3.2e-10 68.2 57 54.4
Actinidia04852 Actinidia chinensis HOM05D000908 ORTHO05D053324 2.1e-09 65.5 79 40.5
Phvul.003G187000 Phaseolus vulgaris HOM05D000908 ORTHO05D000789 2.1e-09 65.5 60 53.3
Phvul.003G187066 Phaseolus vulgaris HOM05D000908 ORTHO05D000789 2.1e-09 65.5 60 53.3
Phvul.L001665 Phaseolus vulgaris HOM05D000908 ORTHO05D000789 2.1e-09 65.5 60 53.3
SEGI_30662 Sequoiadendron giganteum HOM05D000908 ORTHO05D000789 1.0e-08 63.2 51 52.9
DCAR_026024 Daucus carota HOM05D000908 ORTHO05D000789 2.3e-08 62.0 45 55.6
DCAR_026023 Daucus carota HOM05D000908 ORTHO05D000789 3.0e-08 61.6 56 44.6
Lj5C106G17 Lonicera japonica HOM05D000908 ORTHO05D000789 3.7e-06 54.7 47 53.2


User provided reference genes

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