Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g14790 Coffea canephora HOM05D004860 ORTHO05D006366 1.7e-13 77.8 33 100.0
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 2.6e-09 63.9 29 93.1
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 3.4e-09 63.5 29 89.7
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 9.9e-09 62.0 29 86.2
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.3e-08 61.6 29 86.2
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.3e-08 61.6 29 86.2
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.7e-08 61.2 29 82.8
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 2.2e-08 60.8 29 82.8
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 2.9e-08 60.5 29 82.8
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.8e-08 60.1 29 79.3
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 4.9e-08 59.7 29 82.8
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 4.9e-08 59.7 29 82.8
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 4.9e-08 59.7 27 85.2
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 8.4e-08 58.9 29 79.3
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 8.4e-08 58.9 29 79.3
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 8.4e-08 58.9 29 79.3
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.1e-07 58.5 29 75.9
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.1e-07 58.5 29 82.8
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 1.1e-07 58.5 29 82.8
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 1.1e-07 58.5 29 82.8
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.4e-07 58.2 29 86.2
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.4e-07 58.2 29 75.9
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.9e-07 57.8 29 79.3
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.9e-07 57.8 29 72.4
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.9e-07 57.8 29 72.4
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 1.9e-07 57.8 29 75.9
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.9e-07 57.8 29 79.3
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.9e-07 57.8 29 79.3
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 1.9e-07 57.8 29 79.3
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 1.9e-07 57.8 29 79.3
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.9e-07 57.8 29 75.9
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 1.9e-07 57.8 29 72.4
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 1.9e-07 57.8 29 79.3
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 79.3
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 79.3
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 79.3
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 79.3
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 79.3
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 79.3
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 79.3
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 79.3
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 79.3
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 79.3
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 79.3
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 75.9
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 75.9
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 75.9
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 75.9
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 75.9
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 79.3
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 2.4e-07 57.4 29 79.3
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 2.4e-07 57.4 29 75.9
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.2e-07 57.0 29 75.9
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 3.2e-07 57.0 29 72.4
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 3.2e-07 57.0 29 75.9
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 3.2e-07 57.0 29 75.9
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 3.2e-07 57.0 29 72.4
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 4.2e-07 56.6 29 75.9
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 4.2e-07 56.6 27 81.5
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 4.2e-07 56.6 29 75.9
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 5.4e-07 56.2 29 72.4
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 5.4e-07 56.2 29 72.4
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 5.4e-07 56.2 29 75.9
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 5.4e-07 56.2 29 75.9
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 5.4e-07 56.2 27 81.5
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 5.4e-07 56.2 29 72.4
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 5.4e-07 56.2 29 72.4
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 5.4e-07 56.2 29 72.4
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 7.1e-07 55.8 28 75.0
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 7.1e-07 55.8 29 72.4
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 7.1e-07 55.8 29 75.9
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 7.1e-07 55.8 29 72.4
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 7.1e-07 55.8 29 72.4
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.1e-07 55.8 29 69.0
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 7.1e-07 55.8 29 69.0
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 7.1e-07 55.8 29 69.0
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 9.3e-07 55.5 29 72.4
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 9.3e-07 55.5 29 72.4
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 9.3e-07 55.5 29 69.0
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 9.3e-07 55.5 29 69.0
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 9.3e-07 55.5 27 77.8
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 9.3e-07 55.5 27 77.8
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 9.3e-07 55.5 27 77.8
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.2e-06 55.1 29 72.4
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.2e-06 55.1 29 72.4
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.2e-06 55.1 29 72.4
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.2e-06 55.1 29 69.0
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.2e-06 55.1 29 72.4
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 1.2e-06 55.1 29 72.4
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 1.2e-06 55.1 29 75.9
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 1.6e-06 54.7 29 69.0
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 1.6e-06 54.7 29 72.4
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 1.6e-06 54.7 29 72.4
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 1.6e-06 54.7 29 72.4
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.6e-06 54.7 29 72.4
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 2.1e-06 54.3 27 74.1
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 2.1e-06 54.3 27 74.1
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 2.1e-06 54.3 29 69.0
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 2.1e-06 54.3 29 69.0
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 2.7e-06 53.9 29 75.9
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 3.5e-06 53.5 29 69.0
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 3.5e-06 53.5 29 65.5
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.5e-06 53.5 29 75.9
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.5e-06 53.5 29 72.4
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 4.6e-06 53.1 29 72.4
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 4.6e-06 53.1 29 69.0
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 4.6e-06 53.1 29 69.0
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 4.6e-06 53.1 27 70.4
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 4.6e-06 53.1 27 70.4
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 4.6e-06 53.1 27 70.4
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 7.8e-06 52.4 29 75.9


User provided reference genes

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