Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g14740 Coffea canephora HOM05D007073 ORTHO05D008855 2.4e-54 215.3 112 100.0
Cc02_g29940 Coffea canephora HOM05D007073 ORTHO05D008855 5.8e-53 210.7 112 97.3
CSS0049768 Camellia sinensis var. sinensis HOM05D007073 ORTHO05D008855 9.3e-43 176.8 111 81.1
Peaxi162Scf00287g01620 Petunia axillaris HOM05D007073 ORTHO05D008855 1.2e-42 176.4 112 80.4
Hma1.2p1_0773F.1_g216240 Hydrangea macrophylla HOM05D007073 ORTHO05D008855 2.1e-42 175.6 111 81.1
Dinv31819 Davidia involucrata HOM05D007073 ORTHO05D008855 2.7e-42 175.3 111 80.2
Solyc04g081160.3 Solanum lycopersicum HOM05D007073 ORTHO05D008855 2.7e-42 175.3 112 79.5
Sopen04g034780 Solanum pennellii HOM05D007073 ORTHO05D008855 2.7e-42 175.3 112 79.5
PGSC0003DMG400003718 Solanum tuberosum HOM05D007073 ORTHO05D008855 1.3e-41 172.9 112 78.6
GSVIVG01009840001 Vitis vinifera HOM05D007073 ORTHO05D008855 1.8e-41 172.6 111 78.4
Atru.chr13.338 Acer truncatum HOM05D007073 ORTHO05D008855 8.7e-41 170.2 111 76.6
CAN.G1271.5 Capsicum annuum HOM05D007073 ORTHO05D008855 2.5e-40 168.7 112 77.7
TWI56G0686 Tripterygium wilfordii HOM05D007073 ORTHO05D008855 3.3e-40 168.3 111 76.6
COL.COLO4_26179 Corchorus olitorius HOM05D007073 ORTHO05D008855 2.2e-39 165.6 111 75.7
Nn5g29254 Nelumbo nucifera HOM05D007073 ORTHO05D008855 2.2e-39 165.6 110 80.0
RhsimUnG0148500 Rhododendron simsii HOM05D007073 ORTHO05D008855 2.2e-39 165.6 110 78.2
Haze_22602 Corylus avellana HOM05D000624 ORTHO05D000495 4.8e-39 164.5 104 81.7
Migut.C00802 Erythranthe guttata HOM05D007073 ORTHO05D008855 6.3e-39 164.1 111 75.7
vmacro21707 Vaccinium macrocarpon HOM05D007073 ORTHO05D008855 6.3e-39 164.1 110 76.4
AUR62019145 Chenopodium quinoa HOM05D007073 ORTHO05D008855 1.1e-38 163.3 111 76.6
Eucgr.L01253 Eucalyptus grandis HOM05D007073 ORTHO05D008855 1.1e-38 163.3 111 74.8
Lj4g0003370 Lotus japonicus HOM05D007073 ORTHO05D008855 1.1e-38 163.3 111 74.8
Eucgr.H01040 Eucalyptus grandis HOM05D007073 ORTHO05D008855 1.4e-38 162.9 111 73.9
Potri.005G235800 Populus trichocarpa HOM05D007073 ORTHO05D008855 1.4e-38 162.9 109 75.2
Sabra05G0182000 Salix brachista HOM05D007073 ORTHO05D008855 1.4e-38 162.9 110 74.5
CANSAT25G0010 Cannabis sativa HOM05D007073 ORTHO05D008855 1.8e-38 162.5 103 78.6
Duzib093G1738 Durio zibethinus HOM05D007073 ORTHO05D008855 1.8e-38 162.5 111 72.1
Oeu054729.1 Olea europaea HOM05D007073 ORTHO05D008855 2.4e-38 162.2 108 75.9
RcHm_v2.0_Chr6g0272121 Rosa chinensis HOM05D007073 ORTHO05D008855 3.1e-38 161.8 111 73.9
SGA_v2.0_scaffold92G28274 Striga asiatica HOM05D007073 ORTHO05D008855 3.1e-38 161.8 111 74.8
Manes.18G016450 Manihot esculenta HOM05D007073 ORTHO05D008855 4.1e-38 161.4 111 73.0
SalBow7G2056 Salvia bowleyana HOM05D007073 ORTHO05D008855 4.1e-38 161.4 111 73.9
TAR628G0116 Trochodendron aralioides HOM05D007073 ORTHO05D008855 5.3e-38 161.0 111 74.8
CDE08G0828 Ceratophyllum demersum HOM05D007073 ORTHO05D008855 6.9e-38 160.6 111 75.7
Thhalv10009135m.g Eutrema salsugineum HOM05D007073 ORTHO05D008855 6.9e-38 160.6 111 71.2
PSO675G5408 Papaver somniferum HOM05D007073 ORTHO05D008855 6.9e-38 160.6 110 77.3
HanXRQChr02g0044001 Helianthus annuus HOM05D007073 ORTHO05D008855 9.1e-38 160.2 111 73.9
PGR031G0624 Punica granatum HOM05D007073 ORTHO05D008855 9.1e-38 160.2 111 73.9
FvH4_5g30190 Fragaria vesca HOM05D007073 ORTHO05D008855 1.5e-37 159.5 111 72.1
EL10Ac1g00450 Beta vulgaris HOM05D007073 ORTHO05D008855 2.0e-37 159.1 111 73.9
A09p35370 Brassica napus HOM05D007073 ORTHO05D008855 2.0e-37 159.1 111 71.2
PSO541G6379 Papaver somniferum HOM05D007073 ORTHO05D008855 2.0e-37 159.1 110 75.5
Glyma.08G113800 Glycine max HOM05D007073 ORTHO05D008855 2.6e-37 158.7 111 73.0
QL02p010904 Quercus lobata HOM05D007073 ORTHO05D008855 2.6e-37 158.7 110 73.6
BcaC05g27117 Brassica carinata HOM05D007073 ORTHO05D008855 3.4e-37 158.3 111 71.2
BcaC05g27119 Brassica carinata HOM05D007073 ORTHO05D008855 3.4e-37 158.3 111 71.2
C05p29970 Brassica napus HOM05D007073 ORTHO05D008855 3.4e-37 158.3 111 71.2
BolC5t31732H Brassica oleracea HOM05D007073 ORTHO05D008855 3.4e-37 158.3 111 71.2
BolC5t31736H Brassica oleracea HOM05D007073 ORTHO05D008855 3.4e-37 158.3 111 71.2
ECA247G1834 Erigeron canadensis HOM05D007073 ORTHO05D008855 3.4e-37 158.3 110 71.8
VMungo0251G2135 Vigna mungo HOM05D007073 ORTHO05D008855 3.4e-37 158.3 111 72.1
unitig_32.g11146 Utricularia gibba HOM05D007073 ORTHO05D008855 5.9e-37 157.5 109 75.2
Zm00001eb403590 Zea mays HOM05D007073 ORTHO05D008855 5.9e-37 157.5 110 71.8
ClCG08G014440 Citrullus lanatus HOM05D007073 ORTHO05D008855 7.7e-37 157.1 111 73.0
Sp1g26740 Schrenkiella parvula HOM05D007073 ORTHO05D008855 7.7e-37 157.1 111 69.4
SGA_v2.0_scaffold92G28275 Striga asiatica HOM05D007073 ORTHO05D008855 7.7e-37 157.1 109 74.3
Zm00001eb001980 Zea mays HOM05D007073 ORTHO05D008855 1.0e-36 156.8 110 71.8
Psat7g072280 Pisum sativum HOM05D007073 ORTHO05D008855 1.7e-36 156.0 110 72.7
CARHR030330 Cardamine hirsuta HOM05D007073 ORTHO05D008855 2.2e-36 155.6 111 69.4
Sed0011824 Sechium edule HOM05D007073 ORTHO05D008855 5.0e-36 154.5 111 71.2
Lsat_1_v5_gn_1_16141 Lactuca sativa HOM05D007073 ORTHO05D008855 6.5e-36 154.1 111 73.0
MSTRG.1215 Avicennia marina HOM05D007073 ORTHO05D008855 8.5e-36 153.7 109 72.5
BcaB07g32745 Brassica carinata HOM05D007073 ORTHO05D008855 8.5e-36 153.7 109 70.6
Lalb_Chr12g0205331 Lupinus albus HOM05D007073 ORTHO05D008855 8.5e-36 153.7 111 71.2
Phvul.002G236200 Phaseolus vulgaris HOM05D007073 ORTHO05D008855 8.5e-36 153.7 111 71.2
TPR.G24371 Trifolium pratense HOM05D007073 ORTHO05D008855 8.5e-36 153.7 111 72.1
Aa31LG6G9870 Aethionema arabicum HOM05D007073 ORTHO05D008855 1.1e-35 153.3 110 70.9
Carub.0001s2918 Capsella rubella HOM05D007073 ORTHO05D008855 1.1e-35 153.3 111 68.5
HPP92_025607 Vanilla planifolia HOM05D007073 ORTHO05D008855 1.1e-35 153.3 111 70.3
Ca_17949_v3 Cicer arietinum L. HOM05D007073 ORTHO05D008855 2.5e-35 152.1 111 70.3
RcHm_v2.0_Chr6g0302381 Rosa chinensis HOM05D007073 ORTHO05D008855 2.5e-35 152.1 111 71.2
Medtr8g085700 Medicago truncatula HOM05D007073 ORTHO05D008855 3.2e-35 151.8 111 71.2
THA.LOC104810648 Tarenaya hassleriana HOM05D007073 ORTHO05D008855 4.2e-35 151.4 110 69.1
CsaV3_2G029360 Cucumis sativus L. HOM05D007073 ORTHO05D008855 1.2e-34 149.8 111 70.3
Rhsim06G0025500 Rhododendron simsii HOM05D000624 ORTHO05D000495 1.6e-34 149.4 97 79.4
CANSAT11G0546 Cannabis sativa HOM05D007073 ORTHO05D008855 4.7e-34 147.9 102 71.6
Glyma.05G155900 Glycine max HOM05D007073 ORTHO05D008855 6.1e-34 147.5 106 71.7
arahy.Tifrunner.gnm1.ann1.0LW32C Arachis hypogaea HOM05D007073 ORTHO05D008855 7.9e-34 147.1 111 69.4
AT1G30845 Arabidopsis thaliana HOM05D007073 ORTHO05D008855 2.3e-33 145.6 111 66.7
Sc26g0003150 Simmondsia chinensis HOM05D007073 ORTHO05D008855 2.3e-33 145.6 110 70.0
MD08G1016500 Malus domestica HOM05D007073 ORTHO05D008855 5.1e-33 144.4 111 66.7
CANSAT11G2499 Cannabis sativa HOM05D007073 ORTHO05D008855 1.5e-32 142.9 101 70.3
arahy.Tifrunner.gnm1.ann1.F1G2D9 Arachis hypogaea HOM05D007073 ORTHO05D008855 3.3e-32 141.7 134 59.7
C05p29960 Brassica napus HOM05D007073 ORTHO05D008855 1.7e-31 139.4 95 72.6
Cfa013916 Carpinus fangiana HOM05D007073 ORTHO05D008855 2.4e-30 135.6 83 84.3
MD15G1015600 Malus domestica HOM05D007073 ORTHO05D008855 5.3e-30 134.4 111 63.1
Peaxi162Scf01591g00005 Petunia axillaris HOM05D007073 ORTHO05D008855 5.3e-30 134.4 84 79.8
ATR0945G003 Amborella trichopoda HOM05D007073 ORTHO05D008855 6.9e-30 134.0 104 66.3
CiPaw.07G153100 Carya illinoinensis HOM05D007073 ORTHO05D008855 2.0e-29 132.5 83 81.9
Prupe.1G369500 Prunus persica HOM05D007073 ORTHO05D008855 2.6e-29 132.1 84 79.8
Nitab4.5_0005185g0010 Nicotiana tabacum HOM05D007073 ORTHO05D008855 4.5e-29 131.3 82 79.3
AUR62014408 Chenopodium quinoa HOM05D007073 ORTHO05D008855 5.9e-29 131.0 80 85.0
Ciclev10002853m.g Citrus clementina HOM05D007073 ORTHO05D008855 7.7e-29 130.6 99 68.7
Gohir.D01G101000 Gossypium hirsutum HOM05D007073 ORTHO05D008855 1.7e-28 129.4 83 75.9
Gohir.A01G112900 Gossypium hirsutum HOM05D007073 ORTHO05D008855 6.5e-28 127.5 83 74.7
Thecc.08G038900 Theobroma cacao HOM05D007073 ORTHO05D008855 6.5e-28 127.5 83 78.3
Actinidia26593 Actinidia chinensis HOM05D007073 ORTHO05D008855 8.5e-28 127.1 91 75.8
FAN13G2867 Fragaria x ananassa HOM05D007073 ORTHO05D008855 1.1e-27 126.7 87 73.6
Actinidia37317 Actinidia chinensis HOM05D007073 ORTHO05D008855 3.2e-27 125.2 84 76.2
FAN18G2174 Fragaria x ananassa HOM05D007403 ORTHO05D009306 3.2e-27 125.2 83 74.7
AL1G45120 Arabidopsis lyrata HOM05D007073 ORTHO05D008855 4.2e-27 124.8 171 43.9
Aqoxy6G02335_Aqoxy6G02336 Aquilegia oxysepala HOM05D000558 ORTHO05D001857 1.2e-26 123.2 80 80.0
MELO3C010995.2 Cucumis melo HOM05D007073 ORTHO05D008855 4.7e-26 121.3 84 75.0
SEGI_10735 Sequoiadendron giganteum HOM05D007073 ORTHO05D008855 1.0e-25 120.2 114 61.4
Os03g0127000 Oryza sativa ssp. japonica HOM05D007073 ORTHO05D008855 2.3e-25 119.0 80 73.8
Eucgr.H01037 Eucalyptus grandis HOM05D007073 ORTHO05D008855 7.4e-24 114.0 88 68.2
MD13G1087600 Malus domestica HOM05D007073 ORTHO05D008855 1.1e-19 100.1 79 67.1
DCAR_017499 Daucus carota HOM05D007073 ORTHO05D008855 9.4e-19 97.1 64 76.6
Mapoly0121s0038 Marchantia polymorpha HOM05D007073 ORTHO05D008855 3.6e-18 95.1 108 49.1
C05p30020 Brassica napus HOM05D007073 ORTHO05D008855 6.1e-18 94.4 85 55.3
Pp3c8_14860 Physcomitrium patens HOM05D007073 ORTHO05D008855 3.7e-15 85.1 106 50.0
Eucgr.L01259 Eucalyptus grandis HOM05D007073 ORTHO05D008855 8.2e-15 84.0 52 76.9
AagrBONN_evm.TU.Sc2ySwM_344.4448 Anthoceros agrestis HOM05D007073 ORTHO05D008855 3.1e-14 82.0 79 50.6
FAN04G0335 Fragaria x ananassa HOM05D007403 ORTHO05D009306 3.1e-14 82.0 52 76.9
BolC5t31739H Brassica oleracea HOM05D007073 ORTHO05D008855 1.2e-13 80.1 68 58.8
arahy.Tifrunner.gnm1.ann1.JR36LC Arachis hypogaea HOM05D007073 ORTHO05D008855 1.6e-13 79.7 70 62.9
Actinidia04603 Actinidia chinensis HOM05D007073 ORTHO05D008855 2.7e-13 79.0 60 73.3
BcaC05g27114 Brassica carinata HOM05D007073 ORTHO05D008855 3.4e-08 62.0 106 37.7


User provided reference genes

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