Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 8.1e-270 933.3 534 100.0
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 2.6e-159 566.2 543 63.4
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.3e-155 553.9 535 61.9
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.6e-151 539.7 524 60.7
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 2.9e-150 536.2 524 61.3
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 6.4e-150 535.0 525 62.3
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 3.5e-148 529.3 535 60.9
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 3.5e-148 529.3 533 61.5
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 3.9e-147 525.8 526 61.6
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 6.9e-144 515.0 530 60.4
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.6e-143 513.1 529 58.4
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.2e-140 504.2 560 55.7
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 2.7e-140 503.1 538 58.0
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 2.3e-139 500.0 546 57.3
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.1e-136 491.1 543 56.4
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 1.1e-136 491.1 519 58.6
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 5.3e-136 488.8 533 56.3
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 2.6e-135 486.5 544 57.7
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 2.2e-134 483.4 518 56.6
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 5.0e-134 482.3 534 56.9
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 2.5e-133 479.9 539 55.7
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 4.6e-132 475.7 539 57.0
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.8e-131 473.8 493 59.2
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.8e-131 473.8 536 55.6
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 3.9e-131 472.6 544 55.9
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 6.7e-131 471.9 506 58.3
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 7.4e-130 468.4 500 58.8
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 6.3e-129 465.3 532 55.1
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.4e-128 464.2 508 54.9
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.8e-128 463.8 542 55.5
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.5e-127 460.7 541 54.3
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 2.6e-127 459.9 537 54.9
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.4e-127 459.5 536 53.9
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 5.9e-127 458.8 563 52.9
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 3.8e-126 456.1 539 52.7
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.1e-125 454.5 508 55.3
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.1e-125 454.5 539 53.1
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.9e-125 453.8 534 53.0
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 3.2e-125 453.0 540 55.7
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.2e-125 453.0 537 53.4
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 5.5e-125 452.2 539 54.5
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 9.4e-125 451.4 541 53.2
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 2.1e-124 450.3 541 53.0
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.7e-124 449.9 541 52.3
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 6.1e-124 448.7 548 52.6
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.1e-123 445.7 541 52.7
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 4.4e-122 442.6 531 54.6
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 5.7e-122 442.2 543 52.3
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 5.7e-122 442.2 555 51.9
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 2.8e-121 439.9 540 53.1
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 7.0e-120 435.3 527 53.7
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 3.5e-119 433.0 531 51.4
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 5.9e-119 432.2 549 53.2
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 7.7e-119 431.8 492 54.5
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 7.7e-119 431.8 538 53.2
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 1.0e-118 431.4 526 50.0
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.3e-118 431.0 622 47.7
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.1e-117 427.9 539 50.8
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 2.5e-117 426.8 504 53.4
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.6e-116 422.9 535 52.7
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 4.7e-116 422.5 514 52.7
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.3e-115 420.2 543 51.4
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.1e-114 417.9 495 54.5
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.5e-114 417.5 540 51.1
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 9.7e-114 414.8 551 49.0
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 1.1e-112 411.4 543 51.2
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 7.0e-112 408.7 535 50.5
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 3.5e-111 406.4 533 49.2
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 8.5e-110 401.7 494 49.8
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 4.2e-109 399.4 537 49.5
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 5.5e-109 399.1 512 51.8
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 3.6e-108 396.4 536 49.6
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 8.0e-108 395.2 534 47.4
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 1.0e-107 394.8 534 48.7
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.4e-107 394.4 531 47.5
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 2.3e-107 393.7 539 47.1
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 4.0e-107 392.9 544 49.4
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.0e-106 390.6 541 51.4
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 7.5e-106 388.7 531 47.3
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 7.5e-106 388.7 560 45.4
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 1.7e-105 387.5 535 47.1
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 1.7e-105 387.5 524 48.1
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.2e-105 387.1 534 46.3
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 3.1e-104 383.3 493 49.5
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 9.1e-104 381.7 558 47.0
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 9.1e-104 381.7 539 48.2
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 2.7e-103 380.2 557 47.9
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 5.9e-103 379.0 540 46.7
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 7.7e-103 378.6 539 46.0
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 1.0e-102 378.3 537 47.1
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 3.8e-102 376.3 535 46.4
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 8.5e-102 375.2 550 44.5
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 9.4e-101 371.7 506 47.4
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 9.4e-101 371.7 550 44.5
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 1.6e-100 370.9 541 46.8
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 2.7e-100 370.2 504 48.2
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 6.1e-100 369.0 550 44.5
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 6.1e-100 369.0 526 48.7
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 8.0e-100 368.6 547 47.3
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.0e-99 368.2 517 45.8
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 4.0e-99 366.3 535 45.8
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 5.2e-99 365.9 515 45.6
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 2.0e-98 364.0 544 46.1
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.4e-98 363.2 421 55.3
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 7.5e-98 362.1 534 44.2
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 9.8e-98 361.7 543 46.2
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 1.7e-97 360.9 529 45.7
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 2.2e-97 360.5 511 46.8
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 8.3e-97 358.6 553 44.1
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.4e-96 357.8 527 45.4
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 7.0e-96 355.5 527 45.2
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 9.1e-96 355.1 534 47.9
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 1.2e-95 354.8 527 45.4
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 1.2e-95 354.8 540 45.7
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 5.9e-95 352.4 521 44.9
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 7.7e-95 352.1 534 47.4
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 3.8e-94 349.7 514 46.9
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 6.6e-94 349.0 430 54.9
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 2.5e-93 347.1 380 55.8
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.3e-91 340.5 537 46.6
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.2e-90 338.2 445 51.9
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 4.4e-90 336.3 374 55.6
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 2.2e-89 334.0 537 43.8
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 6.6e-86 322.4 518 45.4
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 8.6e-86 322.0 314 64.0
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 6.1e-84 315.8 555 42.5
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 4.4e-82 309.7 551 43.7
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 7.5e-82 308.9 381 50.1
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 7.0e-80 302.4 535 41.9
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.9e-77 294.3 511 41.7
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 7.3e-77 292.4 507 41.8
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 4.0e-75 286.6 488 41.0
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 3.5e-71 273.5 283 55.8
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 4.6e-71 273.1 389 47.6
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 6.2e-68 262.7 580 38.3
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 8.1e-68 262.3 513 38.8
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.1e-67 261.9 444 40.1
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.2e-63 248.4 433 39.7
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 7.3e-61 239.2 252 59.9
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 1.2e-58 231.9 224 60.3
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 5.4e-56 223.0 407 36.1
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 5.1e-54 216.5 392 36.7
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 3.8e-49 200.3 467 35.8
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 4.3e-45 186.8 445 35.3
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 9.6e-45 185.7 334 41.6
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.6e-44 184.9 392 34.7
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 8.1e-44 182.6 392 36.0
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.0e-42 177.9 392 35.5
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.1e-40 172.2 454 33.9
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 4.8e-36 156.8 193 46.6
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.4e-35 155.2 183 53.6
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 2.6e-34 151.0 191 49.7
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 4.5e-34 150.2 495 30.5
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.3e-33 148.7 200 53.0
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 2.5e-32 144.4 479 30.1
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 2.1e-31 141.4 490 29.8
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 3.0e-30 137.5 235 40.4
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.3e-29 134.0 246 39.8
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 2.4e-27 127.9 157 49.0
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 9.0e-27 125.9 246 36.2
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.2e-26 125.6 277 35.0
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.0e-25 122.5 146 49.3
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.7e-25 121.7 110 68.2
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 1.4e-24 118.6 354 31.9
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.3e-21 107.5 123 51.2
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 2.8e-20 104.4 144 45.8
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 4.8e-20 103.6 127 51.2
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.4e-19 102.1 204 42.6
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 1.4e-16 92.0 103 50.5
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.1e-11 75.9 113 41.6
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.2e-10 72.4 100 48.0
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.0e-10 71.6 128 40.6
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 1.0e-09 69.3 120 42.5
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 6.5e-09 66.6 63 50.8
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 1.9e-08 65.1 133 36.8
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 2.3e-06 58.2 57 43.9
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 6.7e-06 56.6 39 66.7


User provided reference genes

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