Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 2.2e-235 818.5 400 100.0
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 5.3e-157 558.1 403 71.2
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 4.5e-156 555.1 410 69.5
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 6.5e-155 551.2 386 71.0
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 3.0e-152 542.3 321 81.0
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 5.2e-152 541.6 408 68.9
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 5.2e-152 541.6 340 77.6
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 2.0e-151 539.7 383 71.0
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 2.6e-151 539.3 404 69.8
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 3.3e-151 538.9 322 81.1
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 5.7e-151 538.1 362 73.2
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 7.5e-151 537.7 351 75.5
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 1.3e-150 537.0 398 69.8
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.2e-150 536.2 359 74.4
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 2.8e-150 535.8 415 66.7
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 6.3e-150 534.6 359 74.1
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 8.2e-150 534.3 313 81.2
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 8.2e-150 534.3 311 81.4
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 3.1e-149 532.3 366 74.0
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 3.1e-149 532.3 383 70.5
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 1.6e-148 530.0 313 80.8
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.6e-148 530.0 350 74.0
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 5.9e-148 528.1 357 73.4
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 5.9e-148 528.1 324 78.7
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.0e-147 527.3 326 78.5
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 1.3e-147 526.9 296 84.8
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 1.3e-147 526.9 358 73.5
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 1.7e-147 526.6 364 72.0
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.2e-147 526.2 387 67.7
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 2.9e-147 525.8 402 68.4
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 2.9e-147 525.8 384 70.1
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 8.5e-147 524.2 311 81.0
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 8.5e-147 524.2 362 73.2
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 8.5e-147 524.2 295 84.7
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 3.2e-146 522.3 361 71.2
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 3.2e-146 522.3 385 70.6
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 7.2e-146 521.2 309 79.6
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 7.2e-146 521.2 352 73.6
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 1.6e-145 520.0 308 81.8
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 1.6e-145 520.0 308 81.8
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 2.1e-145 519.6 319 79.9
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 3.6e-145 518.8 364 72.0
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 2.3e-144 516.2 333 73.3
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 2.3e-144 516.2 311 81.4
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.5e-143 513.5 308 79.2
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 2.0e-143 513.1 374 69.8
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 2.6e-143 512.7 341 73.9
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 5.7e-143 511.5 407 66.1
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 1.4e-141 506.9 331 74.6
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 7.0e-141 504.6 403 66.5
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.2e-140 503.8 400 66.8
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 2.0e-140 503.1 330 74.5
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 2.7e-140 502.7 330 74.5
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 2.7e-140 502.7 330 74.5
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 4.5e-140 501.9 400 66.8
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 5.9e-140 501.5 314 77.1
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 2.2e-139 499.6 320 75.3
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 5.0e-139 498.4 295 81.4
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 8.5e-139 497.7 320 76.9
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 1.1e-138 497.3 320 75.0
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.5e-138 496.9 335 72.8
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 2.5e-138 496.1 319 73.7
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 3.2e-138 495.7 346 71.1
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.2e-138 495.7 296 79.1
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.6e-137 493.4 417 64.5
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 2.1e-137 493.0 320 73.8
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 3.6e-137 492.3 346 71.1
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 6.1e-137 491.5 348 70.7
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 3.0e-136 489.2 315 75.2
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 6.8e-136 488.0 335 68.7
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 4.4e-135 485.3 306 76.1
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 4.4e-135 485.3 306 76.1
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 9.8e-135 484.2 306 76.1
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 9.8e-135 484.2 318 72.0
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 1.3e-134 483.8 296 78.4
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 9.2e-133 477.6 371 68.7
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.6e-132 476.9 411 62.0
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.3e-131 473.8 308 76.9
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 3.8e-131 472.2 322 72.0
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 8.6e-131 471.1 315 72.4
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.9e-130 469.9 273 79.5
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 2.1e-129 466.5 369 65.6
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 3.6e-129 465.7 322 68.9
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 1.4e-128 463.8 258 87.2
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 6.8e-128 461.5 326 68.7
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 6.8e-128 461.5 425 61.4
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 1.3e-126 457.2 379 62.3
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 4.9e-126 455.3 366 63.1
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 4.9e-126 455.3 291 78.0
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 4.1e-125 452.2 281 76.5
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.2e-124 450.7 394 62.4
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 7.8e-124 448.0 294 69.7
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 2.5e-122 443.0 293 72.7
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.6e-121 440.3 327 69.4
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.0e-120 437.6 309 70.6
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.8e-120 436.8 296 68.9
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.2e-120 435.3 254 81.5
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.2e-120 435.3 254 81.5
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.2e-120 435.3 254 81.5
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 6.4e-118 428.3 243 84.8
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 6.4e-118 428.3 294 69.4
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 1.4e-117 427.2 374 58.6
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 2.4e-117 426.4 246 83.7
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 2.0e-116 423.3 372 58.3
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.0e-115 421.0 263 80.2
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.0e-115 421.0 376 57.2
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.9e-115 419.1 372 58.1
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 3.9e-115 419.1 384 57.8
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.5e-114 417.2 442 55.7
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.0e-112 409.1 324 65.4
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.2e-111 407.5 316 66.5
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.5e-111 404.8 376 56.1
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 2.2e-110 403.3 320 65.3
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 2.9e-110 402.9 334 64.4
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 3.5e-108 396.0 237 81.9
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 5.8e-103 378.6 276 69.2
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 7.6e-103 378.3 216 85.2
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 4.9e-102 375.6 278 65.5
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 8.4e-102 374.8 388 55.4
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 9.2e-101 371.3 261 71.6
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 3.5e-100 369.4 395 52.4
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 3.9e-99 365.9 216 82.4
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 1.5e-98 364.0 338 58.9
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 1.4e-93 347.4 338 53.6
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 6.0e-92 342.0 283 61.8
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 5.6e-90 335.5 221 75.6
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 1.3e-89 334.3 301 57.1
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 3.8e-86 322.8 200 78.0
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.9e-82 310.5 205 72.2
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 7.4e-82 308.5 327 53.5
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 4.9e-78 295.8 293 54.3
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 8.4e-78 295.0 315 53.7
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 3.2e-77 293.1 174 82.2
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 5.5e-77 292.4 213 70.4
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 3.5e-76 289.7 258 61.6
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 8.7e-75 285.0 160 81.9
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 5.6e-74 282.3 156 82.1
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.8e-73 280.0 331 50.5
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 8.1e-73 278.5 160 83.1
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 1.2e-71 274.6 284 51.4
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.5e-71 272.7 237 59.5
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 4.9e-70 269.2 194 69.1
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 2.1e-65 253.8 284 44.0
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.0e-62 245.0 152 76.3
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 6.5e-62 242.3 240 55.0
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 1.4e-61 241.1 175 67.4
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 1.0e-59 235.0 176 68.8
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.5e-58 230.3 222 57.2
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 1.4e-56 224.6 197 59.4
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 9.0e-56 221.9 146 71.9
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 9.0e-56 221.9 285 44.2
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 4.5e-55 219.5 138 76.1
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 5.9e-55 219.2 123 84.6
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 4.6e-52 209.5 194 60.3
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.6e-50 203.8 274 44.5
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 2.8e-49 200.3 141 67.4
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.5e-47 194.5 208 51.0
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 6.1e-44 182.6 196 55.6
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 1.0e-43 181.8 175 53.7
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 1.7e-41 174.5 130 65.4
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 2.2e-38 164.1 151 60.3
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 4.2e-37 159.8 168 51.8
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 1.8e-35 154.5 146 53.4
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 7.2e-29 132.5 88 73.9
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 1.8e-27 127.9 117 50.4
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 5.7e-26 122.9 82 72.0
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.3e-25 121.7 70 82.9
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 2.4e-24 117.5 102 56.9
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 1.0e-19 102.1 135 44.4
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 3.7e-17 93.6 52 76.9
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 5.4e-16 89.7 88 47.7
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 2.7e-15 87.4 61 63.9
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 4.5e-15 86.7 141 40.4
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 5.9e-15 86.3 115 48.7
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 1.1e-13 82.0 66 59.1
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 7.3e-13 79.3 56 66.1
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.1e-12 77.8 143 36.4
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.8e-12 77.4 55 67.3
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.0e-11 75.5 45 75.6
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 1.8e-11 74.7 40 87.5
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 2.3e-11 74.3 57 63.2
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 6.4e-09 66.2 52 61.5
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 1.8e-08 64.7 395 24.1
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 1.6e-07 61.6 395 23.8
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 1.0e-06 58.9 267 28.1
DCAR_027769 Daucus carota HOM05D003744 ORTHO05D004327 1.7e-06 58.2 41 70.7
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 6.6e-06 56.2 41 68.3


User provided reference genes

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