Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 2.1e-123 445.7 222 100.0
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 7.5e-44 181.4 104 83.7
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 1.5e-36 157.1 106 74.5
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 9.2e-26 121.3 105 56.2
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 1.2e-25 120.9 102 57.8
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 1.6e-25 120.6 103 59.2
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 2.1e-25 120.2 102 56.9
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.1e-25 120.2 103 57.3
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 2.7e-25 119.8 102 55.9
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.7e-25 119.8 102 55.9
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.6e-25 119.0 102 56.9
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.6e-25 119.0 102 56.9
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.6e-25 119.0 102 56.9
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 6.0e-25 118.6 109 54.1
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 6.0e-25 118.6 102 56.9
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 6.0e-25 118.6 102 56.9
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 1.0e-24 117.9 102 56.9
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.0e-24 117.9 105 54.3
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.0e-24 117.9 102 56.9
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 1.3e-24 117.5 102 55.9
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 1.3e-24 117.5 102 53.9
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 1.3e-24 117.5 102 55.9
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 1.7e-24 117.1 102 54.9
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.7e-24 117.1 103 54.4
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 2.3e-24 116.7 102 55.9
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 2.3e-24 116.7 106 53.8
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 2.3e-24 116.7 102 54.9
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 2.3e-24 116.7 106 53.8
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 2.3e-24 116.7 102 56.9
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 3.0e-24 116.3 102 56.9
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 3.0e-24 116.3 180 42.2
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 3.0e-24 116.3 102 54.9
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.9e-24 115.9 102 55.9
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 3.9e-24 115.9 131 48.1
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 3.9e-24 115.9 102 54.9
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 5.1e-24 115.5 102 55.9
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 5.1e-24 115.5 102 54.9
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 5.1e-24 115.5 116 50.9
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 6.6e-24 115.2 136 46.3
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 6.6e-24 115.2 102 53.9
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 6.6e-24 115.2 102 55.9
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 6.6e-24 115.2 103 54.4
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 6.6e-24 115.2 103 54.4
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 8.6e-24 114.8 102 54.9
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 8.6e-24 114.8 102 54.9
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 8.6e-24 114.8 102 54.9
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 8.6e-24 114.8 102 54.9
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 8.6e-24 114.8 102 54.9
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 8.6e-24 114.8 102 54.9
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 8.6e-24 114.8 102 54.9
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 8.6e-24 114.8 102 53.9
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 8.6e-24 114.8 105 54.3
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 8.6e-24 114.8 102 54.9
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.1e-23 114.4 102 53.9
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.1e-23 114.4 102 52.9
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.1e-23 114.4 102 53.9
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.1e-23 114.4 102 53.9
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 1.1e-23 114.4 102 54.9
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.5e-23 114.0 102 54.9
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 1.5e-23 114.0 102 54.9
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.5e-23 114.0 109 52.3
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.5e-23 114.0 102 53.9
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.5e-23 114.0 139 47.5
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 1.5e-23 114.0 102 54.9
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.5e-23 114.0 159 40.9
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.5e-23 114.0 102 53.9
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.9e-23 113.6 102 53.9
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 2.5e-23 113.2 103 54.4
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 2.5e-23 113.2 104 53.8
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 2.5e-23 113.2 102 53.9
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 2.5e-23 113.2 140 45.0
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 3.3e-23 112.8 102 52.9
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 3.3e-23 112.8 102 55.9
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 3.3e-23 112.8 109 50.5
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 3.3e-23 112.8 102 53.9
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 3.3e-23 112.8 102 53.9
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 4.3e-23 112.5 102 53.9
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 4.3e-23 112.5 102 53.9
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 4.3e-23 112.5 102 53.9
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 4.3e-23 112.5 102 53.9
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 4.3e-23 112.5 102 54.9
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 4.3e-23 112.5 157 40.8
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.3e-23 112.5 102 52.9
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 5.6e-23 112.1 137 48.2
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 5.6e-23 112.1 102 51.0
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 7.3e-23 111.7 136 45.6
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 9.6e-23 111.3 102 53.9
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 9.6e-23 111.3 102 53.9
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 9.6e-23 111.3 102 54.9
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 1.2e-22 110.9 115 49.6
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 1.2e-22 110.9 102 53.9
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 1.2e-22 110.9 99 55.6
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.6e-22 110.5 102 52.9
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 1.6e-22 110.5 102 53.9
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-22 110.5 102 53.9
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 1.6e-22 110.5 102 52.9
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 2.1e-22 110.2 102 53.9
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 2.1e-22 110.2 115 48.7
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 4.7e-22 109.0 106 51.9
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 4.7e-22 109.0 116 47.4
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 6.2e-22 108.6 102 53.9
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 6.2e-22 108.6 102 53.9
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 6.2e-22 108.6 116 49.1
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 8.1e-22 108.2 102 52.0
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 8.1e-22 108.2 102 52.0
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 1.1e-21 107.8 106 50.0
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.1e-21 107.8 102 53.9
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 3.1e-21 106.3 102 53.9
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 3.1e-21 106.3 103 51.5
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 4.0e-21 105.9 103 49.5
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 8.9e-21 104.8 99 51.5
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 8.9e-21 104.8 103 52.4
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.2e-20 104.4 102 51.0
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 1.5e-20 104.0 102 51.0
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.6e-20 103.2 94 55.3
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 4.4e-20 102.4 99 51.5
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.3e-19 100.9 99 50.5
Cc00_g03270 Coffea canephora HOM05D000155 ORTHO05D000022 2.9e-19 99.8 96 47.9
Cc00_g05820 Coffea canephora HOM05D000155 ORTHO05D000022 2.9e-19 99.8 96 47.9
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 2.9e-19 99.8 102 51.0
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.9e-19 99.0 99 50.5
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 2.4e-18 96.7 99 51.5
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 2.1e-17 93.6 85 55.3
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.5e-17 92.8 99 48.5
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 6.0e-17 92.0 103 42.7
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 6.0e-17 92.0 102 49.0
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 1.3e-16 90.9 102 45.1
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 2.3e-16 90.1 103 45.6
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.5e-15 87.4 79 55.7
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 3.3e-15 86.3 83 53.0
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 4.3e-15 85.9 98 49.0
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 5.6e-15 85.5 107 44.9
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.1e-13 81.3 102 45.1
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 5.3e-13 79.0 71 52.1
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 9.0e-13 78.2 83 51.8
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 1.2e-12 77.8 103 44.7
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 2.0e-12 77.0 68 55.9
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 2.0e-12 77.0 68 55.9
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 9.9e-12 74.7 65 52.3
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 2.2e-11 73.6 64 51.6
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.9e-11 73.2 62 53.2
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.9e-11 73.2 64 54.7
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.8e-11 72.8 71 47.9
Cc00_g20180 Coffea canephora HOM05D000155 ORTHO05D000022 6.4e-11 72.0 84 50.0
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 8.4e-11 71.6 64 50.0
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 1.4e-10 70.9 65 49.2
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 2.4e-10 70.1 56 58.9
Cc00_g05270 Coffea canephora HOM05D000155 ORTHO05D000022 5.4e-10 68.9 92 37.0
Cc00_g21050 Coffea canephora HOM05D000155 ORTHO05D000022 6.0e-09 65.5 80 38.8
Cc00_g24940 Coffea canephora HOM05D000155 ORTHO05D000022 6.0e-09 65.5 80 38.8
Cc06_g22510 Coffea canephora HOM05D000155 ORTHO05D000022 6.0e-09 65.5 80 38.8
Cc11_g02100 Coffea canephora HOM05D000003 ORTHO05D000022 7.9e-09 65.1 84 35.7
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 1.0e-08 64.7 104 35.6
Cc03_g15170 Coffea canephora HOM05D000025 ORTHO05D000022 1.8e-08 63.9 84 36.9
Cc00_g15230 Coffea canephora HOM05D000155 ORTHO05D000022 5.1e-08 62.4 80 38.8
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.3e-06 57.8 96 36.5
Aqoxy2G00457 Aquilegia oxysepala HOM05D000650 ORTHO05D000022 6.2e-06 55.5 76 34.2
MBI11_g05090_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.2e-06 55.5 122 31.1


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