Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 3.7e-177 624.8 316 100.0
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 6.6e-126 454.5 311 76.5
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 8.6e-126 454.1 343 70.3
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 1.2e-124 450.3 324 73.8
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 4.7e-124 448.4 284 78.9
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 1.0e-123 447.2 322 74.2
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 1.0e-123 447.2 312 75.0
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 6.8e-123 444.5 307 75.6
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 1.5e-122 443.4 303 76.6
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 9.8e-122 440.7 299 77.3
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 3.7e-121 438.7 315 75.2
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 4.9e-121 438.3 307 75.2
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 8.3e-121 437.6 314 73.2
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 1.4e-120 436.8 316 70.6
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 3.2e-120 435.6 318 73.6
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 7.0e-120 434.5 310 74.2
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 1.6e-119 433.3 324 70.4
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 7.8e-119 431.0 316 71.5
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 1.0e-118 430.6 320 72.5
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 2.3e-118 429.5 317 70.3
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 2.9e-118 429.1 320 71.6
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 5.0e-118 428.3 315 71.1
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 8.6e-118 427.6 322 71.4
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 1.1e-117 427.2 316 72.2
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 1.9e-117 426.4 285 77.2
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 1.9e-117 426.4 300 74.0
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 4.3e-117 425.2 309 73.8
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 5.6e-117 424.9 310 70.3
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 9.5e-117 424.1 280 78.2
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 2.8e-116 422.5 297 73.4
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 2.8e-116 422.5 297 73.4
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 3.6e-116 422.2 322 69.6
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 6.1e-116 421.4 320 70.0
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 6.1e-116 421.4 316 72.5
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 1.0e-115 420.6 316 72.5
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 3.1e-115 419.1 315 72.1
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 4.0e-115 418.7 316 69.9
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 6.8e-115 417.9 310 71.0
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 1.2e-114 417.2 317 71.3
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 2.0e-114 416.4 280 78.9
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 3.4e-114 415.6 315 71.4
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 1.3e-113 413.7 328 68.3
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 1.1e-112 410.6 314 69.4
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 1.9e-112 409.8 287 74.6
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 1.9e-112 409.8 238 85.7
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 2.4e-112 409.5 273 78.0
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 3.2e-112 409.1 305 73.4
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 7.0e-112 407.9 316 70.3
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 9.2e-112 407.5 304 71.7
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 9.2e-112 407.5 302 71.2
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 1.2e-111 407.1 316 69.6
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 3.5e-111 405.6 279 76.7
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 4.6e-111 405.2 316 69.6
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 4.6e-111 405.2 281 74.7
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 6.0e-111 404.8 305 69.8
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 7.8e-111 404.4 310 70.3
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 7.8e-111 404.4 310 70.3
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 7.8e-111 404.4 310 70.3
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 2.3e-110 402.9 317 69.4
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 2.3e-110 402.9 308 69.2
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 3.9e-110 402.1 315 67.0
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 3.9e-110 402.1 280 74.3
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 6.6e-110 401.4 310 70.3
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 1.5e-109 400.2 304 70.7
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 1.9e-109 399.8 296 70.3
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 2.5e-109 399.4 238 83.2
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 3.3e-109 399.1 319 67.7
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 7.3e-109 397.9 253 77.9
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 2.8e-108 396.0 316 68.0
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 4.7e-108 395.2 306 68.3
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 6.2e-108 394.8 318 68.6
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 1.1e-107 394.0 303 69.0
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 1.8e-107 393.3 303 70.0
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 2.3e-107 392.9 312 67.6
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 3.1e-107 392.5 248 80.2
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 5.2e-107 391.7 294 71.1
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 3.4e-106 389.0 304 67.8
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 4.4e-106 388.7 313 66.5
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 1.3e-105 387.1 306 68.6
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 1.4e-104 383.6 247 78.9
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 3.5e-103 379.0 316 64.2
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 6.6e-102 374.8 277 71.1
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 1.1e-101 374.0 236 78.4
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 9.5e-101 370.9 309 63.4
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 8.1e-100 367.9 246 74.8
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 4.0e-99 365.5 313 63.6
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 9.9e-98 360.9 302 64.6
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 2.9e-97 359.4 274 67.9
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 4.1e-96 355.5 240 75.4
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 7.8e-95 351.3 247 69.2
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 5.4e-88 328.6 267 62.5
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 7.8e-87 324.7 268 66.4
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 1.7e-86 323.6 253 68.0
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 4.3e-85 318.9 209 79.4
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 1.1e-80 304.3 245 65.7
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 1.4e-80 303.9 250 62.8
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 3.9e-78 295.8 296 55.1
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 1.7e-73 280.4 193 73.1
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 2.7e-71 273.1 182 73.6
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 1.3e-70 270.8 227 64.8
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 2.1e-68 263.5 199 68.8
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 4.8e-68 262.3 317 50.8
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 5.8e-58 228.8 199 63.3
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 1.6e-52 210.7 242 49.6
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 1.1e-51 208.0 119 87.4
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 1.3e-49 201.1 121 81.8
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 1.1e-48 198.0 123 78.9
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 4.2e-40 169.5 117 70.1
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 1.8e-38 164.1 236 43.2
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 1.9e-32 144.1 229 40.2
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 2.0e-29 134.0 85 78.8
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 6.3e-20 102.4 218 35.8
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 3.8e-17 93.2 218 33.5
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 3.2e-16 90.1 63 76.2
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 1.5e-08 64.7 43 69.8
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 4.2e-08 63.2 33 81.8


User provided reference genes

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