Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 1.3e-165 586.3 293 100.0
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 4.4e-108 395.2 289 68.2
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 7.0e-106 387.9 283 68.2
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 9.1e-106 387.5 298 66.4
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 1.0e-104 384.0 294 64.6
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 1.3e-104 383.6 293 65.9
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 2.9e-104 382.5 293 65.9
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 8.5e-104 380.9 295 65.4
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 8.5e-104 380.9 297 64.6
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.9e-103 379.8 284 69.7
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 2.5e-103 379.4 296 65.2
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 3.2e-103 379.0 286 67.1
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 5.5e-103 378.3 294 65.6
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 5.5e-103 378.3 293 64.8
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 2.7e-102 375.9 293 64.2
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 3.6e-102 375.6 293 65.9
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 3.6e-102 375.6 297 64.3
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 6.1e-102 374.8 281 65.5
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 8.0e-102 374.4 298 63.1
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 8.0e-102 374.4 282 68.8
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 1.4e-101 373.6 293 63.5
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 4.0e-101 372.1 296 67.2
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 5.2e-101 371.7 289 68.9
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 6.8e-101 371.3 294 64.6
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 6.8e-101 371.3 296 63.2
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 1.2e-100 370.5 294 63.6
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 2.0e-100 369.8 296 62.8
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 2.0e-100 369.8 293 62.1
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 4.4e-100 368.6 283 64.3
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 4.4e-100 368.6 296 66.9
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 7.5e-100 367.9 280 68.6
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 7.5e-100 367.9 289 63.7
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 9.8e-100 367.5 292 64.7
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 9.8e-100 367.5 292 64.7
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 1.8e-98 363.2 288 64.9
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 2.4e-98 362.8 283 65.4
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 3.1e-98 362.5 285 62.8
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 4.1e-98 362.1 278 63.7
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 7.0e-98 361.3 292 64.7
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 4.5e-97 358.6 284 63.0
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 5.9e-97 358.2 290 63.8
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 2.3e-96 356.3 291 62.9
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 6.6e-96 354.8 280 63.9
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 8.6e-96 354.4 322 58.7
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 1.1e-95 354.0 322 58.1
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 7.2e-95 351.3 281 62.3
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 9.5e-95 350.9 346 54.3
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 1.2e-94 350.5 287 61.0
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 3.6e-94 349.0 280 61.8
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 4.7e-94 348.6 288 61.8
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 1.0e-93 347.4 284 62.0
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 1.8e-93 346.7 296 59.5
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 5.2e-93 345.1 296 59.5
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 8.9e-93 344.4 279 63.4
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 4.9e-91 338.6 280 61.1
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 4.9e-91 338.6 316 57.0
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 1.8e-90 336.7 236 66.5
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 4.1e-90 335.5 295 59.0
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 1.6e-89 333.6 279 60.2
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 2.0e-89 333.2 279 59.9
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 7.8e-89 331.3 290 58.6
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 2.9e-88 329.3 281 59.8
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 3.9e-88 328.9 235 65.5
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 5.0e-88 328.6 280 61.1
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 3.3e-87 325.9 292 59.2
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 5.6e-87 325.1 279 59.9
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 7.3e-87 324.7 292 56.5
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 1.2e-86 323.9 236 65.7
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 1.6e-86 323.6 292 57.5
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 1.6e-86 323.6 292 57.5
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 2.1e-86 323.2 210 73.8
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 2.8e-86 322.8 292 59.2
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 3.6e-86 322.4 292 58.9
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 4.7e-86 322.0 283 57.6
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 2.3e-85 319.7 299 55.9
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 3.1e-85 319.3 262 60.7
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 1.7e-83 313.5 257 62.6
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 4.1e-82 308.9 292 58.2
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 5.4e-82 308.5 244 64.3
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 1.5e-79 300.4 209 69.9
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 4.3e-79 298.9 233 63.5
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 7.3e-79 298.1 197 71.6
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 3.1e-77 292.7 293 53.9
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 1.2e-76 290.8 209 65.1
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 1.5e-76 290.4 295 54.2
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 8.3e-75 284.6 230 60.0
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 4.1e-74 282.3 247 57.9
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 2.5e-71 273.1 234 59.0
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 6.8e-69 265.0 234 56.4
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 9.2e-66 254.6 176 71.6
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 1.3e-64 250.8 226 56.6
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.7e-64 250.4 223 61.4
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 5.1e-64 248.8 208 61.5
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 3.8e-59 232.6 228 54.4
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 5.1e-56 222.2 168 67.9
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.3e-51 207.6 172 61.6
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 2.9e-51 206.5 133 75.9
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 8.4e-51 204.9 219 51.1
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 9.3e-50 201.4 170 58.8
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 1.8e-45 187.2 161 57.8
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 2.6e-44 183.3 305 39.0
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 3.4e-44 183.0 175 54.9
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 6.0e-41 172.2 239 44.8
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 1.6e-38 164.1 144 59.7
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 1.1e-37 161.4 100 78.0
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 4.0e-37 159.5 102 71.6
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 7.6e-36 155.2 140 62.9
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 4.3e-31 139.4 90 72.2
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 1.6e-30 137.5 104 62.5
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 2.8e-30 136.7 132 51.5
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 3.4e-28 129.8 83 69.9
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 1.1e-26 124.8 97 58.8
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 2.5e-26 123.6 101 61.4
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 1.6e-25 120.9 105 56.2
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 3.0e-24 116.7 103 57.3
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 3.4e-20 103.2 233 32.2
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 5.0e-19 99.4 129 45.7
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.2e-17 94.7 84 52.4
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-16 90.5 119 45.4
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 5.1e-16 89.4 86 52.3
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 7.4e-15 85.5 68 60.3
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 1.7e-14 84.3 65 63.1
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 4.8e-14 82.8 65 66.2
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 6.3e-14 82.4 64 67.2
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 2.0e-12 77.4 54 70.4


User provided reference genes

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