Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 3.4e-267 924.5 479 100.0
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 2.9e-250 868.2 479 94.6
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 9.9e-134 481.1 496 57.1
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.9e-132 476.9 495 55.2
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 2.1e-131 473.4 495 55.4
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 6.0e-131 471.9 504 54.8
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 2.3e-130 469.9 489 57.9
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 6.6e-130 468.4 504 55.4
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.5e-129 467.2 505 55.2
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 1.2e-126 457.6 503 54.1
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.7e-125 453.8 483 55.9
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 2.9e-125 453.0 501 55.7
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.6e-123 447.2 496 53.2
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.0e-122 444.5 486 55.8
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.3e-122 444.1 486 53.7
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 3.9e-122 442.6 489 55.0
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 1.5e-121 440.7 492 52.6
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 3.3e-121 439.5 483 53.6
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 5.6e-121 438.7 485 54.6
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 9.6e-121 438.0 517 53.6
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.6e-120 437.2 530 50.4
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.1e-119 434.5 501 52.9
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.8e-119 433.7 533 50.8
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 5.8e-118 428.7 516 50.0
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 7.6e-118 428.3 505 52.7
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 6.5e-117 425.2 501 51.7
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.6e-115 420.6 527 49.9
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.6e-115 420.6 527 49.9
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.5e-113 413.3 505 49.5
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 4.3e-113 412.5 498 50.4
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 2.8e-112 409.8 487 49.7
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 1.4e-111 407.5 485 49.7
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 9.0e-111 404.8 492 50.4
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.2e-110 404.4 488 50.4
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.2e-110 404.4 493 48.3
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 3.4e-110 402.9 503 50.7
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 4.5e-110 402.5 479 48.2
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 1.7e-109 400.6 505 49.9
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 1.7e-109 400.6 506 49.6
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 2.2e-109 400.2 488 49.2
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 3.8e-109 399.4 503 50.5
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 5.0e-109 399.1 506 50.2
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 6.5e-109 398.7 493 50.5
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 6.5e-109 398.7 494 50.0
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 6.5e-109 398.7 483 50.9
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 7.2e-108 395.2 485 49.3
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 7.2e-108 395.2 468 51.3
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 9.3e-108 394.8 486 52.1
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.2e-107 394.4 489 50.3
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 7.9e-107 391.7 491 49.3
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.3e-106 391.0 422 52.8
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 1.3e-106 391.0 506 49.2
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.3e-106 391.0 488 49.2
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.3e-106 391.0 518 47.1
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 3.0e-106 389.8 512 49.0
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.9e-105 387.1 483 50.9
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.5e-105 386.7 484 50.6
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 5.7e-105 385.6 517 47.8
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 7.4e-105 385.2 488 49.2
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 2.2e-104 383.6 494 48.2
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.2e-104 383.6 482 49.6
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 2.8e-104 383.3 485 49.9
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 2.8e-104 383.3 473 50.5
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 6.3e-104 382.1 480 50.6
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.4e-103 380.9 484 51.2
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.8e-103 380.6 501 48.3
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 4.1e-103 379.4 479 51.1
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 4.1e-103 379.4 479 51.1
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 9.0e-103 378.3 479 50.9
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.2e-102 377.9 492 48.0
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 2.0e-102 377.1 351 59.3
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 2.6e-102 376.7 485 48.2
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 4.5e-102 375.9 492 48.0
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 5.9e-102 375.6 495 46.9
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 5.9e-102 375.6 488 46.5
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 7.7e-102 375.2 479 51.4
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 2.2e-101 373.6 524 46.9
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 6.5e-101 372.1 518 46.1
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 8.5e-101 371.7 485 45.6
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 4.2e-100 369.4 420 48.1
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 4.2e-100 369.4 420 48.1
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.2e-99 367.9 514 44.9
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 2.1e-99 367.1 514 47.9
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 2.1e-99 367.1 499 47.3
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 6.1e-99 365.5 418 51.2
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 6.1e-99 365.5 467 46.5
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 1.4e-98 364.4 422 50.2
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 5.1e-98 362.5 499 46.3
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.3e-95 352.4 499 46.3
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.0e-93 348.2 500 46.6
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.7e-93 347.4 383 52.5
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 2.2e-93 347.1 500 46.4
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-92 344.7 499 45.9
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 3.2e-92 343.2 498 47.2
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 7.2e-92 342.0 494 46.2
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 9.7e-89 331.6 555 41.6
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 3.5e-86 323.2 495 44.8
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 2.2e-85 320.5 424 47.9
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 3.6e-83 313.2 485 45.2
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 2.3e-82 310.5 493 43.0
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 7.5e-81 305.4 481 42.6
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.3e-80 304.7 486 42.0
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.8e-80 303.5 486 43.0
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 3.1e-79 300.1 493 41.8
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 9.4e-76 288.5 482 41.7
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.6e-75 286.6 486 41.8
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 3.6e-75 286.6 470 43.6
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 5.2e-74 282.7 482 41.3
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.8e-72 276.9 334 48.8
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.8e-66 257.7 409 40.3
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 4.0e-66 256.5 506 38.1
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.0e-65 254.2 482 40.2
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 9.8e-65 251.9 457 39.4
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 4.9e-64 249.6 415 42.9
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 5.4e-63 246.1 480 37.9
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 2.7e-62 243.8 501 36.3
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 3.3e-60 236.9 432 38.4
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.7e-54 217.2 386 37.6
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.0e-53 215.3 454 38.1
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.9e-52 211.1 727 28.5
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.9e-52 211.1 512 34.4
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 2.3e-50 204.1 514 33.9
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 3.3e-44 183.7 112 87.5
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 5.6e-44 183.0 112 88.4
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.1e-39 168.7 665 26.5
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 9.2e-39 165.6 227 46.7
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 3.9e-37 160.2 399 34.6
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 3.3e-36 157.1 369 33.6
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 7.3e-36 156.0 212 47.6
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.6e-33 147.5 204 46.6
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 3.4e-33 147.1 205 45.4
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.1e-31 142.1 206 42.2
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 4.7e-27 126.7 579 26.1
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 6.2e-27 126.3 574 25.3
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 5.8e-25 119.8 171 42.7
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 3.5e-22 110.5 206 40.8
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 6.0e-22 109.8 212 37.3
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.5e-20 105.1 402 27.9
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 5.6e-20 103.2 197 38.1
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 1.3e-19 102.1 134 40.3
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.6e-19 101.7 200 38.0
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.8e-19 100.9 196 35.2
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 3.6e-19 100.5 74 59.5
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.4e-18 98.6 147 44.2
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 2.6e-17 94.4 105 49.5
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.3e-16 92.0 591 23.2
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 8.4e-16 89.4 212 34.4
Cc01_g17290 Coffea canephora HOM05D004572 ORTHO05D005425 1.6e-14 85.1 46 89.1
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.1e-14 84.7 158 34.2
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 6.0e-14 83.2 197 33.0
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 8.7e-13 79.3 236 32.2
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.5e-12 77.8 153 41.2
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 5.6e-12 76.6 299 27.4
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.1e-10 72.4 204 31.4
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.8e-10 71.6 176 35.2
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.6e-09 67.8 75 46.7
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 1.3e-08 65.5 189 31.7
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 6.4e-08 63.2 139 33.8
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 8.4e-08 62.8 181 31.5
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 1.1e-07 62.4 47 57.4
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 3.2e-07 60.8 110 33.6
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 5.5e-07 60.1 127 32.3
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 9.3e-07 59.3 165 31.5
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 1.6e-06 58.5 196 28.6
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 2.1e-06 58.2 132 34.1
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 2.1e-06 58.2 162 32.1
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 2.7e-06 57.8 109 34.9
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 2.7e-06 57.8 97 39.2
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 4.6e-06 57.0 90 36.7
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 4.6e-06 57.0 93 35.5
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 4.6e-06 57.0 138 31.2
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 6.0e-06 56.6 141 28.4
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 6.0e-06 56.6 165 30.9
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 7.9e-06 56.2 87 36.8
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 7.9e-06 56.2 90 35.6
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 7.9e-06 56.2 87 36.8
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 7.9e-06 56.2 87 36.8
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 7.9e-06 56.2 87 36.8
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 7.9e-06 56.2 90 35.6
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 7.9e-06 56.2 87 36.8
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 7.9e-06 56.2 139 30.9
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 7.9e-06 56.2 144 29.2


User provided reference genes

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