Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g13310 Coffea canephora HOM05D002801 ORTHO05D003002 2.1e-180 635.6 316 100.0
Cc04_g12180 Coffea canephora HOM05D002801 ORTHO05D003002 4.1e-112 408.7 210 97.1
Dinv37307 Davidia involucrata HOM05D002801 ORTHO05D003002 8.7e-62 241.5 240 55.4
Cfa017598 Carpinus fangiana HOM05D002801 ORTHO05D003002 1.3e-57 227.6 211 56.9
QL07p043643 Quercus lobata HOM05D002801 ORTHO05D003002 1.7e-57 227.3 211 56.4
Hma1.2p1_0205F.1_g087110 Hydrangea macrophylla HOM05D002801 ORTHO05D003002 6.5e-57 225.3 226 57.1
Haze_20554 Corylus avellana HOM05D002801 ORTHO05D003002 8.4e-57 224.9 211 56.9
Potri.016G091700 Populus trichocarpa HOM05D002801 ORTHO05D003002 1.9e-56 223.8 210 56.2
FvH4_6g16260 Fragaria vesca HOM05D002801 ORTHO05D003002 2.5e-56 223.4 212 57.1
FAN14G2570 Fragaria x ananassa HOM05D002801 ORTHO05D003002 2.5e-56 223.4 212 57.1
FAN02G3555 Fragaria x ananassa HOM05D002801 ORTHO05D003002 5.5e-56 222.2 212 57.1
FAN05G5473 Fragaria x ananassa HOM05D002801 ORTHO05D003002 7.1e-56 221.9 212 57.1
Thecc.05G064900 Theobroma cacao HOM05D002801 ORTHO05D003002 7.1e-56 221.9 224 54.0
GSVIVG01025725001 Vitis vinifera HOM05D002801 ORTHO05D003002 7.1e-56 221.9 211 55.5
FAN09G1888 Fragaria x ananassa HOM05D002801 ORTHO05D003002 1.2e-55 221.1 212 56.6
Prupe.6G232900 Prunus persica HOM05D002801 ORTHO05D003002 3.5e-55 219.5 212 56.6
Gohir.D01G203000 Gossypium hirsutum HOM05D002801 ORTHO05D003002 6.1e-55 218.8 221 51.6
Nitab4.5_0002632g0070 Nicotiana tabacum HOM05D002801 ORTHO05D003002 6.1e-55 218.8 219 55.3
CiPaw.10G130400 Carya illinoinensis HOM05D002801 ORTHO05D003002 3.9e-54 216.1 211 55.5
Gorai.002G247700 Gossypium raimondii HOM05D002801 ORTHO05D003002 3.9e-54 216.1 221 51.1
Nitab4.5_0003861g0040 Nicotiana tabacum HOM05D002801 ORTHO05D003002 3.9e-54 216.1 219 54.3
TAR636G1313 Trochodendron aralioides HOM05D002801 ORTHO05D003002 5.1e-54 215.7 212 56.1
Atru.chr8.1823 Acer truncatum HOM05D002801 ORTHO05D003002 6.7e-54 215.3 216 54.6
Ciclev10011099m.g Citrus clementina HOM05D002801 ORTHO05D003002 1.1e-53 214.5 214 57.5
Dinv35782 Davidia involucrata HOM05D002801 ORTHO05D003002 1.5e-53 214.2 177 61.0
Gohir.A01G214500 Gossypium hirsutum HOM05D002801 ORTHO05D003002 1.5e-53 214.2 227 50.7
Solyc09g008100.4 Solanum lycopersicum HOM05D002801 ORTHO05D003002 1.9e-53 213.8 212 54.2
RcHm_v2.0_Chr3g0470121 Rosa chinensis HOM05D002801 ORTHO05D003002 3.3e-53 213.0 212 52.8
CiPaw.10G130300 Carya illinoinensis HOM05D002801 ORTHO05D003002 5.7e-53 212.2 230 51.7
Duzib128G1402 Durio zibethinus HOM05D002801 ORTHO05D003002 7.4e-53 211.8 225 51.1
Manes.09G067140 Manihot esculenta HOM05D002801 ORTHO05D003002 9.7e-53 211.5 228 48.2
COL.COLO4_10010 Corchorus olitorius HOM05D002801 ORTHO05D003002 2.2e-52 210.3 220 53.6
Potri.006G125400 Populus trichocarpa HOM05D002801 ORTHO05D003002 2.2e-52 210.3 211 54.5
Manes.08G009700 Manihot esculenta HOM05D002801 ORTHO05D003002 2.8e-52 209.9 211 54.0
Sopen09g002910 Solanum pennellii HOM05D002801 ORTHO05D003002 3.7e-52 209.5 212 53.8
Sabra16G0097400 Salix brachista HOM05D002801 ORTHO05D009785 6.3e-52 208.8 251 49.0
Gohir.A04G072200 Gossypium hirsutum HOM05D002801 ORTHO05D003002 1.8e-51 207.2 223 52.0
Oeu040375.1 Olea europaea HOM05D002801 ORTHO05D003002 2.4e-51 206.8 226 50.0
Cpa.g.sc56.26 Carica papaya HOM05D002801 ORTHO05D003002 4.1e-51 206.1 210 54.3
Rhsim03G0092600 Rhododendron simsii HOM05D002801 ORTHO05D003002 4.1e-51 206.1 234 50.4
Migut.L01697 Erythranthe guttata HOM05D002801 ORTHO05D003002 1.2e-50 204.5 229 52.4
MSTRG.26694 Avicennia marina HOM05D002801 ORTHO05D003002 2.0e-50 203.8 214 53.7
Gohir.D04G110700 Gossypium hirsutum HOM05D002801 ORTHO05D003002 2.0e-50 203.8 223 51.6
Gorai.009G414900 Gossypium raimondii HOM05D002801 ORTHO05D003002 2.0e-50 203.8 223 51.6
SalBow5G4156 Salvia bowleyana HOM05D002801 ORTHO05D003002 2.6e-50 203.4 216 55.1
SalBow5G1472 Salvia bowleyana HOM05D002801 ORTHO05D003002 3.4e-50 203.0 216 55.1
Actinidia08779 Actinidia chinensis HOM05D002801 ORTHO05D003002 5.9e-50 202.2 232 50.4
CAN.G900.43 Capsicum annuum HOM05D002801 ORTHO05D003002 7.7e-50 201.8 216 50.5
MD12G1113900 Malus domestica HOM05D002801 ORTHO05D003002 1.0e-49 201.4 210 51.9
MELO3C009350.2 Cucumis melo HOM05D002801 ORTHO05D003002 3.8e-49 199.5 221 49.8
CANSAT80G2908 Cannabis sativa HOM05D002801 ORTHO05D003002 1.1e-48 198.0 211 52.6
arahy.Tifrunner.gnm1.ann1.IM29MK Arachis hypogaea HOM05D002801 ORTHO05D003002 2.5e-48 196.8 257 46.3
Sc02g0001680 Simmondsia chinensis HOM05D002801 ORTHO05D003002 3.2e-48 196.4 208 51.0
TWI53G0691 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 3.2e-48 196.4 210 51.4
arahy.Tifrunner.gnm1.ann1.KV6AVL Arachis hypogaea HOM05D002801 ORTHO05D003002 9.4e-48 194.9 257 46.3
Lj2A116G73 Lonicera japonica HOM05D002801 ORTHO05D003002 9.4e-48 194.9 228 52.6
vmacro07286 Vaccinium macrocarpon HOM05D002801 ORTHO05D003002 1.2e-47 194.5 234 50.0
CsaV3_3G035910 Cucumis sativus L. HOM05D002801 ORTHO05D003002 2.7e-47 193.4 213 50.7
Sed0003779 Sechium edule HOM05D002801 ORTHO05D003002 2.7e-47 193.4 213 52.6
ClCG10G020190 Citrullus lanatus HOM05D002801 ORTHO05D003002 3.6e-47 193.0 212 50.5
Sed0017434 Sechium edule HOM05D002801 ORTHO05D003002 3.9e-46 189.5 214 51.9
Nn2g13773 Nelumbo nucifera HOM05D002801 ORTHO05D003002 5.1e-46 189.1 229 49.3
TWI74G0434 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 2.0e-45 187.2 209 50.7
AUR62026908 Chenopodium quinoa HOM05D002801 ORTHO05D003002 3.3e-45 186.4 227 48.0
Sabra06G0099000 Salix brachista HOM05D002801 ORTHO05D003002 7.4e-45 185.3 236 47.0
Peaxi162Scf00701g00031 Petunia axillaris HOM05D002801 ORTHO05D003002 1.7e-44 184.1 220 49.5
Duzib093G0446 Durio zibethinus HOM05D002801 ORTHO05D003002 3.7e-44 183.0 242 43.8
Glyma.02G048100 Glycine max HOM05D002801 ORTHO05D003002 3.7e-44 183.0 229 49.3
Lalb_Chr09g0333141 Lupinus albus HOM05D002801 ORTHO05D003002 6.3e-44 182.2 209 52.2
SGA_v2.0_scaffold35G14132 Striga asiatica HOM05D002801 ORTHO05D003002 6.3e-44 182.2 253 45.1
PGR004G0677 Punica granatum HOM05D002801 ORTHO05D003002 1.8e-43 180.6 212 49.5
ECA238G4143 Erigeron canadensis HOM05D002801 ORTHO05D003002 3.1e-43 179.9 215 48.4
Eucgr.A01690 Eucalyptus grandis HOM05D002801 ORTHO05D003002 3.1e-43 179.9 226 45.6
MBI19_g35569_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 3.1e-43 179.9 212 55.2
Lj4g0021696 Lotus japonicus HOM05D002801 ORTHO05D003002 6.9e-43 178.7 225 47.6
VMungo0251G2590 Vigna mungo HOM05D002801 ORTHO05D003002 1.5e-42 177.6 229 47.6
Lalb_Chr16g0391251 Lupinus albus HOM05D002801 ORTHO05D003002 2.0e-42 177.2 221 50.2
CSS0030915 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 1.3e-41 174.5 231 47.6
Ca_22518_v3 Cicer arietinum L. HOM05D002801 ORTHO05D003002 1.7e-41 174.1 226 47.3
Medtr8g069965 Medicago truncatula HOM05D002801 ORTHO05D003002 2.2e-41 173.7 218 50.5
Phvul.003G261500 Phaseolus vulgaris HOM05D002801 ORTHO05D003002 2.9e-41 173.3 213 50.2
Psat4g113080 Pisum sativum HOM05D002801 ORTHO05D003002 2.9e-41 173.3 226 47.3
Aa31LG5G22170 Aethionema arabicum HOM05D002801 ORTHO05D003002 6.5e-41 172.2 210 47.1
Ah.15g092490 Amaranthus hybridus HOM05D002801 ORTHO05D003002 6.5e-41 172.2 221 43.0
Sp4g19240 Schrenkiella parvula HOM05D002801 ORTHO05D003002 1.1e-40 171.4 214 50.9
Glyma.16G128300 Glycine max HOM05D002801 ORTHO05D003002 1.9e-40 170.6 229 47.2
AT2G36960 Arabidopsis thaliana HOM05D002801 ORTHO05D003002 3.2e-40 169.9 217 47.9
BcaB02g09317 Brassica carinata HOM05D002801 ORTHO05D003002 9.4e-40 168.3 214 47.7
Carub.0004s1880 Capsella rubella HOM05D002801 ORTHO05D003002 1.6e-39 167.5 211 47.4
Thhalv10016298m.g Eutrema salsugineum HOM05D002801 ORTHO05D003002 2.7e-39 166.8 217 47.0
DCAR_017687 Daucus carota HOM05D002801 ORTHO05D003002 4.7e-39 166.0 222 45.5
ECA248G2038 Erigeron canadensis HOM05D002801 ORTHO05D003002 4.7e-39 166.0 207 48.3
EL10Ac7g16619 Beta vulgaris HOM05D002801 ORTHO05D003002 6.1e-39 165.6 215 43.7
AL4G33200 Arabidopsis lyrata HOM05D002801 ORTHO05D003002 7.9e-39 165.2 211 46.4
CARHR131420 Cardamine hirsuta HOM05D002801 ORTHO05D003002 1.4e-38 164.5 213 49.3
PSO801G0542 Papaver somniferum HOM05D002801 ORTHO05D003002 2.3e-38 163.7 216 48.1
PSO339G6183 Papaver somniferum HOM05D002801 ORTHO05D003002 2.6e-37 160.2 218 49.5
BcaC02g11818 Brassica carinata HOM05D002801 ORTHO05D003002 3.3e-37 159.8 210 46.7
C04p11020 Brassica napus HOM05D002801 ORTHO05D003002 3.3e-37 159.8 210 46.7
HanXRQChr01g0027631 Helianthus annuus HOM05D002801 ORTHO05D003002 1.7e-36 157.5 235 41.7
HanXRQChr02g0053371 Helianthus annuus HOM05D002801 ORTHO05D003002 2.2e-36 157.1 220 44.1
A05p08890 Brassica napus HOM05D002801 ORTHO05D003002 3.7e-36 156.4 211 46.9
BraA05t19854Z Brassica rapa HOM05D002801 ORTHO05D003002 3.7e-36 156.4 211 46.9
TPR.G24800 Trifolium pratense HOM05D002801 ORTHO05D003002 8.2e-36 155.2 211 47.9
Aqoxy1G00134 Aquilegia oxysepala HOM05D002801 ORTHO05D003002 1.1e-35 154.8 217 49.3
BcaB01g03805 Brassica carinata HOM05D002801 ORTHO05D003002 1.1e-35 154.8 214 45.3
THA.LOC104806477 Tarenaya hassleriana HOM05D002801 ORTHO05D003002 9.1e-35 151.8 227 43.6
BolC4t22748H Brassica oleracea HOM05D002801 ORTHO05D003002 3.2e-32 143.3 242 40.1
Os03g0241100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 1.5e-29 134.4 219 42.0
Lsat_1_v5_gn_6_11100 Lactuca sativa HOM05D002801 ORTHO05D003002 5.7e-29 132.5 208 43.3
AUR62044138 Chenopodium quinoa HOM05D002801 ORTHO05D003002 7.4e-29 132.1 185 43.8
Zm00001eb010280 Zea mays HOM05D002801 ORTHO05D003002 5.3e-27 125.9 213 39.0
Nn2g11575 Nelumbo nucifera HOM05D002801 ORTHO05D003002 2.0e-26 124.0 129 51.2
Zm00001eb399030 Zea mays HOM05D002801 ORTHO05D003002 3.8e-25 119.8 216 38.9
CDE02G0847 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 1.2e-23 114.8 215 43.7
HPP92_012371 Vanilla planifolia HOM05D002801 ORTHO05D003002 1.6e-23 114.4 237 37.6
CDE06G1853 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 3.6e-23 113.2 248 37.1
Nn1g06008 Nelumbo nucifera HOM05D002801 ORTHO05D003002 1.5e-21 107.8 217 41.9
Nn5g28815 Nelumbo nucifera HOM05D002801 ORTHO05D003002 3.4e-21 106.7 217 39.6
AUR62044224 Chenopodium quinoa HOM05D002801 ORTHO05D003002 5.7e-21 105.9 244 34.4
TAR628G0161 Trochodendron aralioides HOM05D002801 ORTHO05D003002 6.3e-20 102.4 144 45.8
MBI01_g34160_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 8.5e-17 92.0 206 37.9
ATR0115G018 Amborella trichopoda HOM05D002801 ORTHO05D003002 8.0e-15 85.5 210 35.7
Manes.13G086900 Manihot esculenta HOM05D002801 ORTHO05D003002 1.8e-14 84.3 216 35.6
Aqoxy6G00407 Aquilegia oxysepala HOM05D002801 ORTHO05D000003 5.2e-14 82.8 194 36.1
Lsat_1_v5_gn_4_15300 Lactuca sativa HOM05D002801 ORTHO05D003002 2.0e-13 80.9 182 36.3
PGR004G0152 Punica granatum HOM05D002801 ORTHO05D003002 3.4e-13 80.1 213 38.0
Potri.005G086800 Populus trichocarpa HOM05D002801 ORTHO05D003002 2.8e-12 77.0 208 33.2
Gohir.D12G093200 Gossypium hirsutum HOM05D002801 ORTHO05D003002 8.3e-12 75.5 198 34.8
Gorai.008G100900 Gossypium raimondii HOM05D002801 ORTHO05D003002 1.8e-11 74.3 198 34.3
Gohir.A12G092100 Gossypium hirsutum HOM05D002801 ORTHO05D003002 4.1e-11 73.2 188 35.1
PSO541G5550 Papaver somniferum HOM05D002801 ORTHO05D003002 5.4e-11 72.8 228 32.9
Duzib147G0082 Durio zibethinus HOM05D002801 ORTHO05D003002 1.6e-10 71.2 187 33.2
Sabra05G0071500 Salix brachista HOM05D002801 ORTHO05D003002 3.5e-10 70.1 201 33.3
Zm00001eb122120 Zea mays HOM05D002801 ORTHO05D003002 3.5e-10 70.1 138 38.4
BolC4t28051H Brassica oleracea HOM05D002801 ORTHO05D003002 5.9e-10 69.3 86 45.3
Lsat_1_v5_gn_9_91540 Lactuca sativa HOM05D002801 ORTHO05D003002 1.3e-09 68.2 84 50.0
GSVIVG01022269001 Vitis vinifera HOM05D002801 ORTHO05D003002 1.7e-09 67.8 192 35.9
Thecc.01G116700 Theobroma cacao HOM05D002801 ORTHO05D003002 2.3e-09 67.4 127 38.6
Ciclev10025563m.g Citrus clementina HOM05D002801 ORTHO05D003002 2.9e-09 67.0 183 33.9
Dinv16428 Davidia involucrata HOM05D002801 ORTHO05D003002 2.9e-09 67.0 226 31.4
PSO675G1764 Papaver somniferum HOM05D002801 ORTHO05D003002 2.9e-09 67.0 228 31.6
Cpa.g.sc72.56 Carica papaya HOM05D002801 ORTHO05D003002 3.8e-09 66.6 198 33.3
CANSAT01G1175 Cannabis sativa HOM05D002801 ORTHO05D003002 8.6e-09 65.5 188 32.4
VMungo0251G3377 Vigna mungo HOM05D002801 ORTHO05D003002 1.1e-08 65.1 203 33.0
Atru.chr4.732 Acer truncatum HOM05D002801 ORTHO05D003002 1.5e-08 64.7 122 37.7
Potri.007G077700 Populus trichocarpa HOM05D002801 ORTHO05D003002 1.5e-08 64.7 202 31.7
Os01g0182400 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 1.9e-08 64.3 128 39.1
Lj4g0005520 Lotus japonicus HOM05D002801 ORTHO05D003002 2.5e-08 63.9 202 33.2
Hma1.2p1_0529F.1_g173250 Hydrangea macrophylla HOM05D002801 ORTHO05D003002 7.2e-08 62.4 201 31.8
CSS0045988 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D005850 1.6e-07 61.2 182 30.2
ClCG01G015890 Citrullus lanatus HOM05D002801 ORTHO05D003002 1.6e-07 61.2 194 31.4
Phvul.002G267200 Phaseolus vulgaris HOM05D002801 ORTHO05D003002 1.6e-07 61.2 205 32.7
Rhsim10G0147600 Rhododendron simsii HOM05D002801 ORTHO05D003002 1.6e-07 61.2 197 31.0
Oeu064301.1 Olea europaea HOM05D002801 ORTHO05D003002 2.1e-07 60.8 115 38.3
COL.COLO4_03468 Corchorus olitorius HOM05D002801 ORTHO05D003002 2.8e-07 60.5 131 37.4
GSVIVG01005831001 Vitis vinifera HOM05D031085 ORTHO05D030729 2.8e-07 60.5 54 57.4
Eucgr.I00296 Eucalyptus grandis HOM05D002801 ORTHO05D003002 4.7e-07 59.7 97 43.3
Ca_17675_v3 Cicer arietinum L. HOM05D000084 ORTHO05D005850 6.1e-07 59.3 232 30.2
Ca_29601_v3 Cicer arietinum L. HOM05D002801 ORTHO05D003002 6.1e-07 59.3 232 30.2
TWI75G0453 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 6.1e-07 59.3 206 32.5
HPP92_020047 Vanilla planifolia HOM05D002801 ORTHO05D003002 6.1e-07 59.3 173 32.4
Migut.G00981 Erythranthe guttata HOM05D021702 ORTHO05D014212 8.0e-07 58.9 25 96.0
Os07g0634100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 1.8e-06 57.8 91 36.3
CiPaw.04G089200 Carya illinoinensis HOM05D002801 ORTHO05D003002 3.0e-06 57.0 216 31.9
CsaV3_6G042170 Cucumis sativus L. HOM05D002801 ORTHO05D003002 3.0e-06 57.0 212 29.7
Hund19627 Selenicereus undatus HOM05D002801 ORTHO05D003002 4.0e-06 56.6 224 33.0
Oeu040172.1 Olea europaea HOM05D021702 ORTHO05D014212 5.2e-06 56.2 24 95.8
Glyma.08G144600 Glycine max HOM05D002801 ORTHO05D003002 6.8e-06 55.8 196 31.1


User provided reference genes

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