Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 2.7e-172 608.6 312 100.0
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 3.0e-171 605.1 312 99.4
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 7.2e-93 344.7 272 65.4
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.6e-87 327.0 287 60.6
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.3e-86 323.9 284 60.9
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 2.2e-86 323.2 312 57.4
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 2.2e-86 323.2 290 58.6
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 3.8e-86 322.4 308 55.8
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 3.2e-85 319.3 272 61.4
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 3.2e-85 319.3 272 61.4
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 7.2e-85 318.2 289 57.4
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 9.5e-85 317.8 299 59.2
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 8.0e-84 314.7 301 56.1
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 3.0e-83 312.8 300 55.3
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 5.2e-83 312.0 316 55.1
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 8.8e-83 311.2 298 58.1
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.5e-82 310.5 284 58.1
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 2.6e-82 309.7 262 62.2
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 5.7e-82 308.5 304 55.3
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 5.7e-82 308.5 283 55.8
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 9.8e-82 307.8 272 59.6
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 2.2e-81 306.6 294 55.8
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.8e-81 306.2 286 57.7
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 2.8e-81 306.2 286 57.7
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 3.7e-81 305.8 313 53.7
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 6.3e-81 305.1 286 57.7
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 6.3e-81 305.1 315 54.9
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 8.3e-81 304.7 282 57.8
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 1.4e-80 303.9 313 54.0
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.8e-80 303.5 271 59.0
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 3.1e-80 302.8 286 57.0
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 9.2e-80 301.2 311 55.6
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 1.6e-79 300.4 313 55.0
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.9e-79 298.5 294 55.4
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 1.3e-78 297.4 287 55.4
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 3.8e-78 295.8 284 56.0
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.9e-77 293.5 310 54.2
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 9.5e-77 291.2 271 57.2
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 9.5e-77 291.2 272 57.7
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 1.6e-76 290.4 272 56.6
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.1e-76 290.0 294 54.1
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 3.6e-76 289.3 288 54.9
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 8.0e-76 288.1 295 55.6
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.0e-75 287.7 314 52.5
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 5.2e-75 285.4 291 54.0
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 5.7e-74 282.0 291 54.6
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 7.5e-74 281.6 286 54.2
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.7e-73 280.4 288 54.9
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 2.2e-73 280.0 306 52.3
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 4.9e-73 278.9 295 52.9
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 6.4e-73 278.5 292 54.8
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 1.1e-72 277.7 295 53.6
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 1.4e-72 277.3 316 52.2
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 3.2e-72 276.2 224 63.4
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 1.6e-71 273.9 287 51.6
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.6e-71 273.9 281 53.4
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 2.0e-71 273.5 270 54.8
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 2.0e-71 273.5 302 50.0
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 5.9e-71 271.9 272 54.8
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 7.8e-71 271.6 382 47.4
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 3.0e-70 269.6 286 52.1
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.9e-70 269.2 304 51.0
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 6.6e-70 268.5 269 54.3
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 4.3e-69 265.8 273 52.4
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 7.3e-69 265.0 286 52.1
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 9.5e-69 264.6 289 52.9
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.6e-68 263.8 252 56.3
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 2.1e-68 263.5 291 50.2
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 3.6e-68 262.7 305 48.5
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 4.7e-68 262.3 311 49.2
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 1.4e-67 260.8 271 52.4
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 2.3e-67 260.0 272 52.2
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 3.1e-67 259.6 290 50.0
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 3.1e-67 259.6 287 50.2
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 4.0e-67 259.2 253 55.3
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 6.8e-67 258.5 282 51.4
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 2.6e-66 256.5 309 49.8
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 5.8e-66 255.4 308 47.4
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 6.4e-65 251.9 292 49.0
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.4e-64 250.8 259 52.1
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.9e-64 250.4 285 50.5
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 2.4e-64 250.0 290 50.0
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 3.2e-64 249.6 269 52.0
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 7.0e-64 248.4 316 46.8
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 6.6e-62 241.9 290 48.6
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 1.9e-61 240.4 270 49.6
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 3.3e-61 239.6 223 55.2
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 4.3e-61 239.2 267 51.3
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 6.2e-60 235.3 289 47.1
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 1.1e-59 234.6 273 46.2
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 6.8e-59 231.9 285 44.6
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.2e-58 231.1 290 47.2
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 3.4e-58 229.6 314 48.1
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 4.9e-57 225.7 316 44.3
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 7.1e-56 221.9 260 45.8
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.9e-53 213.8 270 45.6
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 7.3e-53 211.8 298 44.0
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 7.3e-53 211.8 274 45.3
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 2.0e-50 203.8 261 46.0
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 5.8e-50 202.2 198 54.5
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 2.2e-49 200.3 272 45.2
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 2.7e-47 193.4 288 41.0
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 3.5e-47 193.0 254 45.7
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 1.9e-45 187.2 209 52.2
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.1e-37 161.4 228 42.1
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 4.3e-37 159.5 191 51.3
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 2.8e-36 156.8 171 47.4
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 7.1e-32 142.1 272 34.2
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 1.1e-29 134.8 136 50.7
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 1.3e-28 131.3 259 32.8
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 2.8e-28 130.2 206 38.8
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.8e-27 127.5 161 44.7
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.1e-24 118.2 130 49.2
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.0e-22 110.2 194 38.1
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.0e-22 110.2 130 49.2
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 1.1e-21 108.2 220 33.2
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 8.2e-20 102.1 228 35.1
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 9.0e-19 98.6 186 37.6
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.9e-17 93.6 180 36.7
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.9e-17 93.6 180 36.7
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 3.8e-17 93.2 165 37.6
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 3.8e-17 93.2 106 53.8
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 4.9e-17 92.8 166 35.5
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 2.7e-15 87.0 131 41.2
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 5.7e-13 79.3 129 37.2
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 7.4e-13 79.0 94 47.9
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.4e-11 74.7 164 32.3
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 6.9e-11 72.4 61 60.7
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.0e-11 72.0 63 57.1
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.0e-11 72.0 63 57.1
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.5e-10 71.2 62 54.8
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 1.7e-09 67.8 112 40.2
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 8.5e-09 65.5 65 50.8
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 8.5e-09 65.5 95 41.1
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 1.4e-08 64.7 68 48.5
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 1.4e-08 64.7 68 48.5
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.9e-08 64.3 55 58.2
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.3e-06 57.4 131 31.3
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 2.3e-06 57.4 175 29.7


User provided reference genes

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