Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g12780 Coffea canephora HOM05D000181 ORTHO05D007068 3.4e-37 157.9 85 100.0
Cc05_g01550 Coffea canephora HOM05D000181 ORTHO05D007068 6.9e-22 107.1 53 90.6
Cc04_g12710 Coffea canephora HOM05D000181 ORTHO05D007068 9.0e-22 106.7 53 90.6
GSVIVG01036763001 Vitis vinifera HOM05D000181 ORTHO05D007068 6.5e-20 100.5 53 83.0
Dinv42476 Davidia involucrata HOM05D000181 ORTHO05D007068 1.9e-19 99.0 53 79.2
Thecc.07G182000 Theobroma cacao HOM05D000181 ORTHO05D007068 1.9e-19 99.0 53 81.1
CiPaw.11G060900 Carya illinoinensis HOM05D000181 ORTHO05D007068 3.2e-19 98.2 53 81.1
Ciclev10004242m.g Citrus clementina HOM05D000181 ORTHO05D007068 5.5e-19 97.4 53 79.2
Duzib213G0016 Durio zibethinus HOM05D000181 ORTHO05D007068 7.1e-19 97.1 53 79.2
Prupe.4G132700 Prunus persica HOM05D000181 ORTHO05D007068 9.3e-19 96.7 53 81.1
Gohir.A13G125100 Gossypium hirsutum HOM05D000181 ORTHO05D007068 1.2e-18 96.3 51 82.4
Gohir.D13G128800 Gossypium hirsutum HOM05D000181 ORTHO05D007068 1.2e-18 96.3 53 79.2
Gorai.013G144900 Gossypium raimondii HOM05D000181 ORTHO05D007068 1.2e-18 96.3 53 79.2
MSTRG.7078 Avicennia marina HOM05D000181 ORTHO05D007068 2.1e-18 95.5 53 79.2
Nn7g38234 Nelumbo nucifera HOM05D000181 ORTHO05D007068 2.1e-18 95.5 53 79.2
arahy.Tifrunner.gnm1.ann1.1IB7AW Arachis hypogaea HOM05D000181 ORTHO05D007068 3.5e-18 94.7 53 77.4
arahy.Tifrunner.gnm1.ann1.HBHB6G Arachis hypogaea HOM05D000181 ORTHO05D007068 3.5e-18 94.7 53 77.4
RcHm_v2.0_Chr5g0024281 Rosa chinensis HOM05D000181 ORTHO05D007068 4.6e-18 94.4 53 79.2
Migut.M01524 Erythranthe guttata HOM05D000181 ORTHO05D007068 6.0e-18 94.0 53 77.4
FvH4_3g14760 Fragaria vesca HOM05D000181 ORTHO05D007068 7.9e-18 93.6 53 77.4
FAN11G1148 Fragaria x ananassa HOM05D000181 ORTHO05D007068 7.9e-18 93.6 53 77.4
FAN16G1891 Fragaria x ananassa HOM05D000181 ORTHO05D007068 7.9e-18 93.6 53 77.4
FAN21G2082 Fragaria x ananassa HOM05D000181 ORTHO05D007068 7.9e-18 93.6 53 77.4
FAN25G2563 Fragaria x ananassa HOM05D000181 ORTHO05D007068 1.3e-17 92.8 53 77.4
MD05G1229800 Malus domestica HOM05D000181 ORTHO05D007068 1.3e-17 92.8 53 75.5
MD10G1209200 Malus domestica HOM05D000181 ORTHO05D007068 1.3e-17 92.8 53 75.5
Peaxi162Scf00006g01615 Petunia axillaris HOM05D000181 ORTHO05D007068 1.3e-17 92.8 52 75.0
QL04p087205 Quercus lobata HOM05D000181 ORTHO05D007068 1.8e-17 92.4 52 75.0
Solyc02g079000.4 Solanum lycopersicum HOM05D000181 ORTHO05D007068 1.8e-17 92.4 51 76.5
Sopen02g023810 Solanum pennellii HOM05D000181 ORTHO05D007068 1.8e-17 92.4 51 76.5
unitig_748.g7620 Utricularia gibba HOM05D000181 ORTHO05D007068 3.0e-17 91.7 53 75.5
Lalb_Chr01g0007221 Lupinus albus HOM05D000181 ORTHO05D007068 3.9e-17 91.3 53 71.7
CSS0042976 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D007068 5.1e-17 90.9 51 76.5
Lj3g0011719 Lotus japonicus HOM05D000181 ORTHO05D007068 5.1e-17 90.9 53 73.6
Sc10g0005160 Simmondsia chinensis HOM05D000181 ORTHO05D007068 6.7e-17 90.5 53 73.6
Sed0005173 Sechium edule HOM05D000181 ORTHO05D007068 8.7e-17 90.1 53 71.7
Oeu034062.1 Olea europaea HOM05D000181 ORTHO05D007068 1.1e-16 89.7 53 71.7
TAR627G0133 Trochodendron aralioides HOM05D000181 ORTHO05D007068 1.1e-16 89.7 51 74.5
Potri.010G171300 Populus trichocarpa HOM05D000181 ORTHO05D007068 1.5e-16 89.4 51 76.5
ECA240G0620 Erigeron canadensis HOM05D000181 ORTHO05D007068 2.5e-16 88.6 53 69.8
AUR62040740 Chenopodium quinoa HOM05D000181 ORTHO05D007068 3.3e-16 88.2 51 74.5
ClCG02G018660 Citrullus lanatus HOM05D000181 ORTHO05D007068 5.7e-16 87.4 53 69.8
Nitab4.5_0006529g0020 Nicotiana tabacum HOM05D000181 ORTHO05D007068 7.4e-16 87.0 51 72.5
PSO675G5464 Papaver somniferum HOM05D000181 ORTHO05D007068 7.4e-16 87.0 53 73.6
CAN.G891.3 Capsicum annuum HOM05D000181 ORTHO05D007068 9.7e-16 86.7 53 69.8
Aqoxy1G01434 Aquilegia oxysepala HOM05D000181 ORTHO05D007068 1.3e-15 86.3 53 67.9
Manes.06G176300 Manihot esculenta HOM05D000181 ORTHO05D007068 1.3e-15 86.3 51 74.5
CANSAT80G1988 Cannabis sativa HOM05D000181 ORTHO05D007068 1.6e-15 85.9 54 72.2
HanXRQChr03g0078201 Helianthus annuus HOM05D000181 ORTHO05D007068 1.6e-15 85.9 53 67.9
Medtr8g056860 Medicago truncatula HOM05D000181 ORTHO05D007068 1.6e-15 85.9 54 64.8
Eucgr.F04462 Eucalyptus grandis HOM05D000181 ORTHO05D007068 2.2e-15 85.5 53 71.7
Glyma.08G237500 Glycine max HOM05D000181 ORTHO05D007068 2.2e-15 85.5 53 71.7
Lsat_1_v5_gn_7_69480 Lactuca sativa HOM05D000181 ORTHO05D007068 2.8e-15 85.1 53 67.9
DCAR_013723 Daucus carota HOM05D000181 ORTHO05D007068 3.7e-15 84.7 53 67.9
Phvul.011G177500 Phaseolus vulgaris HOM05D000181 ORTHO05D007068 3.7e-15 84.7 53 69.8
TWI38G0335 Tripterygium wilfordii HOM05D000181 ORTHO05D007068 4.8e-15 84.3 53 67.9
PGR031G2481 Punica granatum HOM05D000181 ORTHO05D007068 6.3e-15 84.0 53 67.9
Nitab4.5_0000388g0100 Nicotiana tabacum HOM05D000181 ORTHO05D007068 8.2e-15 83.6 51 68.6
THA.LOC104812371 Tarenaya hassleriana HOM05D000181 ORTHO05D007068 8.2e-15 83.6 51 74.5
MELO3C019635.2 Cucumis melo HOM05D000181 ORTHO05D007068 1.1e-14 83.2 53 69.8
EL10Ac2g03239 Beta vulgaris HOM05D000181 ORTHO05D007068 1.4e-14 82.8 51 64.7
Carub.0002s2642 Capsella rubella HOM05D000181 ORTHO05D007068 1.4e-14 82.8 53 66.0
A07p27070 Brassica napus HOM05D000181 ORTHO05D007068 3.1e-14 81.6 53 67.9
BraA07t30351Z Brassica rapa HOM05D000181 ORTHO05D007068 4.1e-14 81.3 53 67.9
Ca_25910_v3 Cicer arietinum L. HOM05D000181 ORTHO05D007068 4.1e-14 81.3 53 66.0
C06p29810 Brassica napus HOM05D000181 ORTHO05D007068 5.3e-14 80.9 53 67.9
BolC6t38142H Brassica oleracea HOM05D000181 ORTHO05D007068 5.3e-14 80.9 53 67.9
PSO675G4612 Papaver somniferum HOM05D000181 ORTHO05D007068 5.3e-14 80.9 53 69.8
BcaB02g07225 Brassica carinata HOM05D000181 ORTHO05D007068 9.0e-14 80.1 51 68.6
CsaV3_6G013510 Cucumis sativus L. HOM05D000181 ORTHO05D007068 5.9e-13 77.4 53 64.2
Sp5g34620 Schrenkiella parvula HOM05D000181 ORTHO05D007068 5.9e-13 77.4 51 66.7
CARHR073220 Cardamine hirsuta HOM05D000181 ORTHO05D007068 1.3e-12 76.3 51 64.7
Thhalv10018071m.g Eutrema salsugineum HOM05D000181 ORTHO05D007068 2.2e-12 75.5 51 64.7
HPP92_000846 Vanilla planifolia HOM05D000181 ORTHO05D007068 2.2e-12 75.5 53 56.6
Aa31LG4G1430 Aethionema arabicum HOM05D000181 ORTHO05D007068 3.8e-12 74.7 51 64.7
AT1G79560 Arabidopsis thaliana HOM05D000181 ORTHO05D007068 5.5e-11 70.9 51 62.7
SGA_v2.0_scaffold7G03612 Striga asiatica HOM05D000181 ORTHO05D007068 5.5e-11 70.9 51 52.9
CDE06G0559 Ceratophyllum demersum HOM05D000181 ORTHO05D007068 4.6e-10 67.8 51 62.7
AL2G40200 Arabidopsis lyrata HOM05D000181 ORTHO05D007068 7.9e-10 67.0 51 60.8
Psat4g137600 Pisum sativum HOM05D000181 ORTHO05D007068 4.1e-06 54.7 42 57.1


User provided reference genes

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