Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g12580 Coffea canephora HOM05D003444 ORTHO05D003963 2.0e-43 178.7 90 100.0
Dinv20618 Davidia involucrata HOM05D003444 ORTHO05D003963 1.7e-26 122.5 82 78.0
CSS0007457 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 3.7e-26 121.3 82 76.8
CSS0020421 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 3.7e-26 121.3 82 76.8
Ciclev10020974m.g Citrus clementina HOM05D003444 ORTHO05D003963 3.7e-26 121.3 82 75.6
Actinidia19346 Actinidia chinensis HOM05D003444 ORTHO05D003963 4.9e-26 120.9 82 75.6
Gohir.A07G063100 Gossypium hirsutum HOM05D003444 ORTHO05D003963 4.9e-26 120.9 82 76.8
Gohir.D07G067700 Gossypium hirsutum HOM05D003444 ORTHO05D003963 6.4e-26 120.6 82 76.8
Thecc.03G023900 Theobroma cacao HOM05D003444 ORTHO05D003963 6.4e-26 120.6 82 76.8
Dinv38555 Davidia involucrata HOM05D003444 ORTHO05D003963 3.2e-25 118.2 82 75.6
Duzib205G1696 Durio zibethinus HOM05D003444 ORTHO05D003963 5.4e-25 117.5 82 75.6
GSVIVG01007683001 Vitis vinifera HOM05D003444 ORTHO05D003963 1.2e-24 116.3 82 73.2
MBI10_g32035_MAGBIO Magnolia biondii HOM05D003444 ORTHO05D003963 1.6e-24 115.9 82 72.0
Aqoxy3G01091 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 2.1e-24 115.5 81 71.6
Nitab4.5_0001284g0080 Nicotiana tabacum HOM05D003444 ORTHO05D003963 2.7e-24 115.2 73 80.8
Nitab4.5_0001647g0010 Nicotiana tabacum HOM05D003444 ORTHO05D003963 2.7e-24 115.2 75 80.0
Rhsim08G0175500 Rhododendron simsii HOM05D003444 ORTHO05D003963 2.7e-24 115.2 82 74.4
Peaxi162Scf00089g01529 Petunia axillaris HOM05D003444 ORTHO05D003963 3.5e-24 114.8 75 78.7
Prupe.5G169400 Prunus persica HOM05D003444 ORTHO05D003963 3.5e-24 114.8 82 70.7
Lj5A128T62 Lonicera japonica HOM05D003444 ORTHO05D003963 6.0e-24 114.0 82 73.2
PGSC0003DMG400018108 Solanum tuberosum HOM05D003444 ORTHO05D003963 7.8e-24 113.6 80 76.2
TAR629G1253 Trochodendron aralioides HOM05D003444 ORTHO05D003963 1.0e-23 113.2 82 72.0
CAN.G338.8 Capsicum annuum HOM05D003444 ORTHO05D003963 1.3e-23 112.8 76 77.6
Sc12g0005160 Simmondsia chinensis HOM05D003444 ORTHO05D003963 1.3e-23 112.8 79 74.7
COL.COLO4_30123 Corchorus olitorius HOM05D003444 ORTHO05D003963 3.0e-23 111.7 82 73.2
Solyc03g112520.3 Solanum lycopersicum HOM05D003444 ORTHO05D003963 3.0e-23 111.7 80 76.2
Sopen03g031580 Solanum pennellii HOM05D003444 ORTHO05D003963 3.0e-23 111.7 80 76.2
QL10p008500 Quercus lobata HOM05D003444 ORTHO05D003963 5.1e-23 110.9 76 75.0
QL10p008640 Quercus lobata HOM05D003444 ORTHO05D003963 5.1e-23 110.9 76 75.0
MSTRG.23156 Avicennia marina HOM05D003444 ORTHO05D003963 8.6e-23 110.2 82 69.5
CiPaw.11G022500 Carya illinoinensis HOM05D003444 ORTHO05D003963 1.1e-22 109.8 82 72.0
Gorai.001G071300 Gossypium raimondii HOM05D003444 ORTHO05D003963 1.5e-22 109.4 76 76.3
Eucgr.B03880 Eucalyptus grandis HOM05D003444 ORTHO05D003963 1.9e-22 109.0 80 68.8
Nn4g22663 Nelumbo nucifera HOM05D003444 ORTHO05D003963 3.3e-22 108.2 82 69.5
SalBow5G0548 Salvia bowleyana HOM05D003444 ORTHO05D003963 3.3e-22 108.2 76 72.4
Haze_07554 Corylus avellana HOM05D003444 ORTHO05D003963 5.6e-22 107.5 79 70.9
Hund09457 Selenicereus undatus HOM05D003444 ORTHO05D003963 7.3e-22 107.1 74 77.0
BcaB02g07746 Brassica carinata HOM05D003444 ORTHO05D003963 9.5e-22 106.7 73 76.7
CSS0016754 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 9.5e-22 106.7 73 75.3
CSS0046637 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.2e-21 106.3 74 74.3
Cpa.g.sc35.80 Carica papaya HOM05D003444 ORTHO05D003963 2.8e-21 105.1 70 78.6
CiPaw.12G029000 Carya illinoinensis HOM05D003444 ORTHO05D003963 2.8e-21 105.1 76 72.4
FAN08G2080 Fragaria x ananassa HOM05D003444 ORTHO05D003963 2.8e-21 105.1 76 75.0
Ah.11g051380 Amaranthus hybridus HOM05D003444 ORTHO05D003963 3.6e-21 104.8 73 76.7
ECA247G0281 Erigeron canadensis HOM05D003444 ORTHO05D003963 4.7e-21 104.4 75 70.7
vmacro19323 Vaccinium macrocarpon HOM05D003444 ORTHO05D003963 4.7e-21 104.4 72 77.8
Cfa019176 Carpinus fangiana HOM05D003444 ORTHO05D003963 6.2e-21 104.0 79 72.2
FAN13G0471 Fragaria x ananassa HOM05D003444 ORTHO05D003963 6.2e-21 104.0 82 69.5
RcHm_v2.0_Chr7g0192981 Rosa chinensis HOM05D003444 ORTHO05D003963 6.2e-21 104.0 82 69.5
Aa31sc491G40 Aethionema arabicum HOM05D003444 ORTHO05D003963 8.1e-21 103.6 73 72.6
FAN04G2640 Fragaria x ananassa HOM05D003444 ORTHO05D003963 8.1e-21 103.6 76 73.7
CARHR082370 Cardamine hirsuta HOM05D003444 ORTHO05D003963 1.1e-20 103.2 70 77.1
EL10Ac5g10690 Beta vulgaris HOM05D003444 ORTHO05D003963 1.4e-20 102.8 76 73.7
FvH4_5g05840 Fragaria vesca HOM05D003444 ORTHO05D003963 1.4e-20 102.8 82 68.3
FAN18G3108 Fragaria x ananassa HOM05D003444 ORTHO05D003963 1.4e-20 102.8 82 68.3
A07p22020 Brassica napus HOM05D003444 ORTHO05D003963 1.8e-20 102.4 74 74.3
BraA07t29885Z Brassica rapa HOM05D003444 ORTHO05D003963 1.8e-20 102.4 74 74.3
MELO3C026275.2 Cucumis melo HOM05D003444 ORTHO05D003963 1.8e-20 102.4 76 69.7
Sp5g08230 Schrenkiella parvula HOM05D003444 ORTHO05D003963 2.4e-20 102.1 67 79.1
HPP92_013532 Vanilla planifolia HOM05D003444 ORTHO05D003963 3.1e-20 101.7 84 61.9
CsaV3_1G001270 Cucumis sativus L. HOM05D003444 ORTHO05D003963 5.2e-20 100.9 76 68.4
Thhalv10010523m.g Eutrema salsugineum HOM05D003444 ORTHO05D003963 6.8e-20 100.5 67 76.1
Aqoxy1G03753 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 8.9e-20 100.1 78 67.9
Aqoxy3G02821 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 8.9e-20 100.1 78 67.9
ClCG09G013270 Citrullus lanatus HOM05D003444 ORTHO05D003963 1.2e-19 99.8 75 69.3
HanXRQChr02g0035691 Helianthus annuus HOM05D003444 ORTHO05D003963 1.2e-19 99.8 75 68.0
AL5G35210 Arabidopsis lyrata HOM05D003444 ORTHO05D003963 1.5e-19 99.4 67 76.1
ClCG06G017220 Citrullus lanatus HOM05D003444 ORTHO05D003963 1.5e-19 99.4 76 68.4
Eucgr.B00240 Eucalyptus grandis HOM05D003444 ORTHO05D003963 1.5e-19 99.4 72 72.2
Lsat_1_v5_gn_1_28101 Lactuca sativa HOM05D003444 ORTHO05D003963 1.5e-19 99.4 74 68.9
Os06g0474200 Oryza sativa ssp. japonica HOM05D003444 ORTHO05D003963 2.0e-19 99.0 80 66.2
BcaNung05459 Brassica carinata HOM05D003444 ORTHO05D003963 2.6e-19 98.6 75 73.3
C06p22000 Brassica napus HOM05D003444 ORTHO05D003963 2.6e-19 98.6 75 73.3
BolC6t37388H Brassica oleracea HOM05D003444 ORTHO05D003963 2.6e-19 98.6 75 73.3
Migut.G00959 Erythranthe guttata HOM05D003444 ORTHO05D003963 2.6e-19 98.6 76 64.5
CANSAT80G2021 Cannabis sativa HOM05D003444 ORTHO05D003963 3.4e-19 98.2 76 68.4
Glyma.05G040200 Glycine max HOM05D003444 ORTHO05D003963 3.4e-19 98.2 80 67.5
HanXRQChr16g0504631 Helianthus annuus HOM05D003444 ORTHO05D003963 5.8e-19 97.4 75 66.7
Carub.0005s2076 Capsella rubella HOM05D003444 ORTHO05D003963 9.9e-19 96.7 67 73.1
PSO017G6313 Papaver somniferum HOM05D003444 ORTHO05D003963 9.9e-19 96.7 71 67.6
PSO478G2857 Papaver somniferum HOM05D003444 ORTHO05D003963 9.9e-19 96.7 71 67.6
SGA_v2.0_scaffold25G10811 Striga asiatica HOM05D003444 ORTHO05D003963 9.9e-19 96.7 70 72.9
DCAR_026161 Daucus carota HOM05D003444 ORTHO05D003963 2.9e-18 95.1 73 71.2
Sabra02G0159900 Salix brachista HOM05D003444 ORTHO05D003963 4.9e-18 94.4 84 65.5
Manes.14G062700 Manihot esculenta HOM05D003444 ORTHO05D003963 1.1e-17 93.2 82 63.4
ATR1152G109 Amborella trichopoda HOM05D003444 ORTHO05D003963 3.2e-17 91.7 75 62.7
Glyma.17G086600 Glycine max HOM05D003444 ORTHO05D003963 4.2e-17 91.3 83 63.9
arahy.Tifrunner.gnm1.ann1.V3MNVK Arachis hypogaea HOM05D003444 ORTHO05D003963 5.4e-17 90.9 80 61.2
MD06G1169900 Malus domestica HOM05D003444 ORTHO05D003963 5.4e-17 90.9 70 72.9
PGR083G1868 Punica granatum HOM05D003444 ORTHO05D003963 5.4e-17 90.9 54 79.6
THA.LOC104809841 Tarenaya hassleriana HOM05D003444 ORTHO05D003963 7.1e-17 90.5 73 63.0
arahy.Tifrunner.gnm1.ann1.N3JE1D Arachis hypogaea HOM05D003444 ORTHO05D003963 6.0e-16 87.4 80 60.0
VMungo1309G2319 Vigna mungo HOM05D003444 ORTHO05D003963 7.8e-16 87.0 81 60.5
CDE05G0978 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 1.3e-15 86.3 76 63.2
arahy.Tifrunner.gnm1.ann1.GAE861 Arachis hypogaea HOM05D003444 ORTHO05D003963 1.7e-15 85.9 81 61.7
C08p29430 Brassica napus HOM05D003444 ORTHO05D003963 1.7e-15 85.9 61 68.9
Ca_16152_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 1.7e-15 85.9 76 61.8
Lalb_Chr12g0201761 Lupinus albus HOM05D003444 ORTHO05D003963 1.7e-15 85.9 77 61.0
Potri.002G197600 Populus trichocarpa HOM05D003444 ORTHO05D003963 1.7e-15 85.9 76 67.1
Sed0021330 Sechium edule HOM05D003444 ORTHO05D003963 1.7e-15 85.9 79 59.5
arahy.Tifrunner.gnm1.ann1.BAEJ4E Arachis hypogaea HOM05D003444 ORTHO05D003963 2.3e-15 85.5 81 61.7
BolC8t50544H Brassica oleracea HOM05D003444 ORTHO05D003963 2.3e-15 85.5 61 68.9
Lj1g0020971 Lotus japonicus HOM05D003444 ORTHO05D003963 3.9e-15 84.7 74 62.2
Glyma.06G179400 Glycine max HOM05D003444 ORTHO05D003963 5.1e-15 84.3 80 61.2
arahy.Tifrunner.gnm1.ann1.P2M8BS Arachis hypogaea HOM05D003444 ORTHO05D003963 6.6e-15 84.0 74 60.8
arahy.Tifrunner.gnm1.ann1.9FBM9V Arachis hypogaea HOM05D003444 ORTHO05D003963 1.1e-14 83.2 81 60.5
Psat0s2597g0040 Pisum sativum HOM05D003444 ORTHO05D003963 1.1e-14 83.2 76 60.5
arahy.Tifrunner.gnm1.ann1.T862AX Arachis hypogaea HOM05D003444 ORTHO05D003963 1.5e-14 82.8 74 59.5
SGA_v2.0_scaffold90G27874 Striga asiatica HOM05D003444 ORTHO05D003963 1.5e-14 82.8 152 40.1
Lalb_Chr08g0236641 Lupinus albus HOM05D003444 ORTHO05D003963 1.9e-14 82.4 73 61.6
Medtr3g077320 Medicago truncatula HOM05D003444 ORTHO05D003963 1.9e-14 82.4 74 59.5
Glyma.04G186400 Glycine max HOM05D003444 ORTHO05D003963 2.5e-14 82.0 74 63.5
BcaB01g00212 Brassica carinata HOM05D003444 ORTHO05D003963 3.3e-14 81.6 65 63.1
Phvul.002G107400 Phaseolus vulgaris HOM05D003444 ORTHO05D003963 3.3e-14 81.6 76 60.5
A09p47170 Brassica napus HOM05D003444 ORTHO05D003963 5.6e-14 80.9 53 71.7
BraA09t40179Z Brassica rapa HOM05D003444 ORTHO05D003963 1.2e-13 79.7 53 69.8
Ca_21949_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 1.6e-13 79.3 84 59.5
TPR.G31058 Trifolium pratense HOM05D003444 ORTHO05D003963 1.4e-12 76.3 73 61.6
Manes.06G108200 Manihot esculenta HOM05D003444 ORTHO05D003963 4.0e-12 74.7 72 61.1
TPR.G37557 Trifolium pratense HOM05D003444 ORTHO05D003963 2.6e-11 72.0 81 59.3
AT3G54170 Arabidopsis thaliana HOM05D003444 ORTHO05D003963 9.9e-11 70.1 67 61.2
Psat4g060120 Pisum sativum HOM05D003444 ORTHO05D003963 1.3e-10 69.7 78 61.5
TPR.G7254 Trifolium pratense HOM05D003444 ORTHO05D003963 2.9e-10 68.6 80 57.5
CDE11G0533 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 3.2e-09 65.1 83 48.2
unitig_8.g3056 Utricularia gibba HOM05D003444 ORTHO05D003963 9.3e-09 63.5 78 50.0
Nitab4.5_0006505g0040 Nicotiana tabacum HOM05D006630 ORTHO05D008476 1.0e-07 60.1 33 87.9
Prupe.5G169200 Prunus persica HOM05D003444 ORTHO05D008476 1.0e-07 60.1 36 77.8
arahy.Tifrunner.gnm1.ann1.L59R0S Arachis hypogaea HOM05D001055 ORTHO05D000867 1.3e-07 59.7 70 55.7
Lsat_1_v5_gn_4_76300 Lactuca sativa HOM05D003444 ORTHO05D003963 8.7e-07 57.0 47 66.0
Lsat_1_v5_gn_5_139960 Lactuca sativa HOM05D003444 ORTHO05D003963 1.5e-06 56.2 32 84.4
Hma1.2p1_0046F.1_g026860 Hydrangea macrophylla HOM05D003444 ORTHO05D003963 4.3e-06 54.7 29 89.7
Lsat_1_v5_gn_9_59541 Lactuca sativa HOM05D000064 ORTHO05D003963 7.3e-06 53.9 39 69.2


User provided reference genes

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